Wall clock time and date at job start Tue Mar 31 2020 20:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50700 * 119.99956 * 2 1 4 4 N 1.46504 * 109.47403 * 124.99783 * 3 2 1 5 5 C 1.34813 * 126.59626 * 124.99736 * 4 3 2 6 6 C 1.36592 * 106.83779 * 180.02562 * 5 4 3 7 7 C 1.47524 * 125.76785 * 180.02562 * 6 5 4 8 8 O 1.21601 * 120.00367 * 353.47504 * 7 6 5 9 9 N 1.34778 * 119.99985 * 173.47466 * 7 6 5 10 10 C 1.46491 * 120.00009 * 3.32440 * 9 7 6 11 11 C 1.46507 * 119.99877 * 183.32392 * 9 7 6 12 12 C 1.53003 * 109.46925 * 90.00137 * 11 9 7 13 13 C 1.52997 * 109.46727 * 180.02562 * 12 11 9 14 14 H 1.08998 * 109.47459 * 304.99579 * 13 12 11 15 15 N 1.46494 * 109.47475 * 64.99803 * 13 12 11 16 16 C 1.36939 * 120.00419 * 204.99653 * 15 13 12 17 17 H 1.07998 * 119.99607 * 0.02562 * 16 15 13 18 18 C 1.38810 * 120.00425 * 179.97438 * 16 15 13 19 19 N 1.31626 * 119.99889 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00115 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47075 * 60.00460 * 20 18 16 22 22 H 1.48497 * 109.47096 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.46985 * 300.00514 * 20 18 16 24 24 C 1.53005 * 109.47046 * 184.99905 * 13 12 11 25 25 C 1.53000 * 109.46842 * 304.99749 * 24 13 12 26 26 C 1.53001 * 109.46909 * 64.99768 * 24 13 12 27 27 N 1.34399 * 108.46007 * 0.02562 * 6 5 4 28 28 N 1.28761 * 109.52244 * 0.02562 * 27 6 5 29 29 H 1.07999 * 119.99882 * 0.02562 * 1 2 3 30 30 H 1.07998 * 119.99940 * 179.97438 * 1 2 3 31 31 H 1.07999 * 119.99882 * 179.97438 * 2 1 3 32 32 H 1.09003 * 109.47352 * 4.99571 * 3 2 1 33 33 H 1.09006 * 109.47075 * 244.99742 * 3 2 1 34 34 H 1.08002 * 126.57702 * 0.02562 * 5 4 3 35 35 H 1.08994 * 109.47594 * 84.10096 * 10 9 7 36 36 H 1.08999 * 109.47227 * 204.10560 * 10 9 7 37 37 H 1.09008 * 109.47362 * 324.10118 * 10 9 7 38 38 H 1.08997 * 109.46986 * 209.99992 * 11 9 7 39 39 H 1.08994 * 109.46965 * 330.00161 * 11 9 7 40 40 H 1.08997 * 109.47170 * 299.99742 * 12 11 9 41 41 H 1.08996 * 109.47201 * 59.99680 * 12 11 9 42 42 H 0.97000 * 120.00029 * 24.99685 * 15 13 12 43 43 H 0.96994 * 119.99685 * 179.97438 * 19 18 16 44 44 H 1.09002 * 109.47154 * 184.99606 * 24 13 12 45 45 H 1.09006 * 109.46951 * 60.00270 * 25 24 13 46 46 H 1.09005 * 109.46847 * 179.97438 * 25 24 13 47 47 H 1.08996 * 109.47519 * 299.99919 * 25 24 13 48 48 H 1.08993 * 109.47181 * 300.00092 * 26 24 13 49 49 H 1.08997 * 109.46980 * 60.00251 * 26 24 13 50 50 H 1.09006 * 109.46770 * 180.02562 * 26 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1315 5 6 4.3229 1.5498 1.0741 6 6 4.7900 1.4862 2.3562 7 6 6.1939 1.6655 2.7723 8 8 7.0677 1.7735 1.9336 9 7 6.5081 1.7095 4.0822 10 6 5.4668 1.5067 5.0924 11 6 7.8910 1.9603 4.4958 12 6 8.1106 3.4661 4.6548 13 6 9.5550 3.7280 5.0861 14 1 9.7732 3.1592 5.9899 15 7 10.4667 3.3141 4.0166 16 6 11.7566 2.9636 4.3139 17 1 12.1018 2.9919 5.3369 18 6 12.6203 2.5710 3.3007 19 7 12.1995 2.5360 2.0540 20 14 14.3798 2.0922 3.7064 21 1 14.3758 0.9385 4.6414 22 1 15.0907 1.7158 2.4582 23 1 15.0717 3.2422 4.3421 24 6 9.7411 5.2207 5.3657 25 6 9.3157 6.0266 4.1366 26 6 8.8809 5.6262 6.5642 27 7 3.7542 1.2327 3.1743 28 7 2.6731 1.1341 2.4819 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3586 2.1317 0.0895 33 1 2.6213 1.4026 -0.9314 34 1 4.9064 1.7384 0.1851 35 1 5.3221 0.4388 5.2559 36 1 5.7698 1.9795 6.0266 37 1 4.5334 1.9510 4.7465 38 1 8.0817 1.4629 5.4467 39 1 8.5726 1.5716 3.7392 40 1 7.9199 3.9635 3.7039 41 1 7.4290 3.8548 5.4113 42 1 10.1566 3.2884 3.0979 43 1 12.8032 2.2620 1.3459 44 1 10.7896 5.4211 5.5865 45 1 8.2673 5.8263 3.9159 46 1 9.4479 7.0901 4.3360 47 1 9.9285 5.7378 3.2828 48 1 7.8326 5.4258 6.3434 49 1 9.1840 5.0520 7.4397 50 1 9.0132 6.6897 6.7631 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506477237.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:16 Heat of formation + Delta-G solvation = 78.447103 kcal Electronic energy + Delta-G solvation = -29219.781453 eV Core-core repulsion = 25284.855287 eV Total energy + Delta-G solvation = -3934.926167 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -43.26359 -40.65580 -38.90206 -36.98681 -36.56558 -35.01922 -33.80176 -32.85603 -32.01493 -30.99406 -28.19625 -27.91344 -27.71676 -26.80807 -25.16273 -24.02723 -23.40213 -22.93436 -21.27797 -20.44759 -19.82957 -19.18011 -18.64418 -17.37747 -17.21493 -17.11166 -16.74910 -16.25278 -16.12382 -15.67698 -15.63907 -15.49327 -15.16783 -14.85158 -14.57395 -14.41155 -14.28679 -13.94436 -13.62066 -13.55207 -13.49269 -13.04398 -12.91402 -12.83794 -12.80478 -12.75537 -12.47458 -12.39190 -12.15304 -12.10817 -11.92733 -11.76428 -11.64254 -11.33933 -11.32692 -11.25090 -10.95957 -10.78898 -10.57916 -10.31755 -9.59675 -8.86193 -7.83780 -5.10952 0.12980 0.63497 0.78310 1.47603 1.50770 1.56452 1.58432 2.01053 2.23347 2.61592 3.14710 3.39415 3.47685 3.72336 3.81528 3.96105 3.97347 4.06933 4.11187 4.15161 4.26184 4.40283 4.42327 4.46414 4.53990 4.55247 4.62571 4.65546 4.74398 4.84511 4.88703 4.94012 4.94148 5.00101 5.13385 5.19145 5.22262 5.32842 5.38504 5.40605 5.45074 5.56902 5.57410 5.63957 5.66905 5.67050 5.74777 6.36254 6.37432 6.86098 7.15404 7.42526 8.22641 8.44637 9.39298 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014514 B = 0.002565 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.721023 B =10915.104551 C =11948.519562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.199 4.199 3 C 0.141 3.859 4 N -0.344 5.344 5 C 0.105 3.895 6 C -0.119 4.119 7 C 0.587 3.413 8 O -0.572 6.572 9 N -0.599 5.599 10 C 0.076 3.924 11 C 0.125 3.875 12 C -0.118 4.118 13 C 0.180 3.820 14 H 0.048 0.952 15 N -0.729 5.729 16 C -0.228 4.228 17 H 0.075 0.925 18 C -0.080 4.080 19 N -0.969 5.969 20 Si 0.966 3.034 21 H -0.279 1.279 22 H -0.301 1.301 23 H -0.280 1.280 24 C -0.111 4.111 25 C -0.130 4.130 26 C -0.135 4.135 27 N -0.214 5.214 28 N -0.081 5.081 29 H 0.117 0.883 30 H 0.113 0.887 31 H 0.106 0.894 32 H 0.121 0.879 33 H 0.143 0.857 34 H 0.228 0.772 35 H 0.058 0.942 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.052 0.948 40 H 0.045 0.955 41 H 0.093 0.907 42 H 0.370 0.630 43 H 0.246 0.754 44 H 0.042 0.958 45 H 0.055 0.945 46 H 0.054 0.946 47 H 0.024 0.976 48 H 0.065 0.935 49 H 0.057 0.943 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.039 -0.544 -0.022 27.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.218 4.218 3 C 0.023 3.977 4 N -0.129 5.129 5 C -0.053 4.053 6 C -0.258 4.258 7 C 0.374 3.626 8 O -0.451 6.451 9 N -0.330 5.330 10 C -0.066 4.066 11 C 0.003 3.997 12 C -0.157 4.157 13 C 0.071 3.929 14 H 0.066 0.934 15 N -0.368 5.368 16 C -0.360 4.360 17 H 0.093 0.907 18 C -0.272 4.272 19 N -0.621 5.621 20 Si 0.796 3.204 21 H -0.205 1.205 22 H -0.227 1.227 23 H -0.206 1.206 24 C -0.132 4.132 25 C -0.187 4.187 26 C -0.193 4.193 27 N -0.087 5.087 28 N -0.061 5.061 29 H 0.135 0.865 30 H 0.132 0.868 31 H 0.124 0.876 32 H 0.139 0.861 33 H 0.161 0.839 34 H 0.244 0.756 35 H 0.076 0.924 36 H 0.108 0.892 37 H 0.113 0.887 38 H 0.109 0.891 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.111 0.889 42 H 0.201 0.799 43 H 0.055 0.945 44 H 0.060 0.940 45 H 0.074 0.926 46 H 0.073 0.927 47 H 0.043 0.957 48 H 0.084 0.916 49 H 0.076 0.924 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -27.602 -0.829 0.630 27.622 hybrid contribution 2.101 -0.293 -1.340 2.509 sum -25.501 -1.122 -0.710 25.536 Atomic orbital electron populations 1.24203 0.95172 1.03842 0.94526 1.22851 0.96807 0.97143 1.04957 1.21603 0.92120 0.98676 0.85282 1.50785 1.06684 1.46376 1.09051 1.23768 0.85013 0.95981 1.00530 1.21315 0.94325 1.18293 0.91842 1.17291 0.85866 0.76538 0.82905 1.90886 1.49402 1.52559 1.52237 1.47799 1.10223 1.69284 1.05666 1.22266 0.90899 1.02152 0.91294 1.21412 0.80826 0.96844 1.00647 1.22072 0.96955 0.95182 1.01494 1.20434 0.88483 0.92936 0.91014 0.93404 1.42630 1.08992 1.79471 1.05685 1.19559 0.88800 1.34548 0.93102 0.90671 1.25499 1.02043 1.04242 0.95409 1.69863 1.36108 1.56447 0.99650 0.85308 0.80798 0.78186 0.76067 1.20504 1.22745 1.20614 1.21661 0.98872 0.96997 0.95674 1.21654 1.00377 0.98983 0.97692 1.21793 0.99729 1.01088 0.96644 1.74720 0.96453 1.10868 1.26701 1.81886 1.17341 1.22109 0.84811 0.86470 0.86842 0.87559 0.86061 0.83889 0.75555 0.92364 0.89238 0.88726 0.89092 0.92966 0.93630 0.88860 0.79861 0.94511 0.93958 0.92554 0.92671 0.95693 0.91603 0.92379 0.92406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.88 14.32 67.78 0.97 0.09 16 2 C -0.20 -1.77 9.72 25.65 0.25 -1.53 16 3 C 0.14 1.08 6.98 85.63 0.60 1.68 16 4 N -0.34 -5.86 3.68 -350.81 -1.29 -7.15 16 5 C 0.10 2.15 11.28 83.85 0.95 3.10 16 6 C -0.12 -3.29 6.69 40.82 0.27 -3.01 16 7 C 0.59 20.50 7.67 86.69 0.66 21.16 16 8 O -0.57 -25.02 16.43 -4.03 -0.07 -25.09 16 9 N -0.60 -18.82 2.87 -850.56 -2.44 -21.27 16 10 C 0.08 1.77 9.59 127.77 1.22 2.99 16 11 C 0.13 4.43 5.29 86.38 0.46 4.88 16 12 C -0.12 -4.02 4.28 30.59 0.13 -3.89 16 13 C 0.18 7.10 2.06 44.99 0.09 7.19 16 14 H 0.05 1.87 8.08 -2.39 -0.02 1.85 16 15 N -0.73 -37.61 4.03 -322.95 -1.30 -38.91 16 16 C -0.23 -12.91 9.93 84.03 0.83 -12.07 16 17 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 18 C -0.08 -4.77 5.50 84.86 0.47 -4.31 16 19 N -0.97 -62.51 13.06 21.65 0.28 -62.23 16 20 Si 0.97 48.04 29.55 68.60 2.03 50.07 16 21 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 22 H -0.30 -15.22 7.11 99.48 0.71 -14.52 16 23 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 24 C -0.11 -3.92 2.88 -10.79 -0.03 -3.95 16 25 C -0.13 -4.62 8.59 71.98 0.62 -4.00 16 26 C -0.13 -3.49 8.95 71.98 0.64 -2.85 16 27 N -0.21 -5.58 8.81 -50.00 -0.44 -6.02 16 28 N -0.08 -1.88 13.63 37.02 0.50 -1.38 16 29 H 0.12 0.40 7.84 -2.91 -0.02 0.38 16 30 H 0.11 0.58 8.06 -2.91 -0.02 0.56 16 31 H 0.11 1.19 8.06 -2.91 -0.02 1.16 16 32 H 0.12 0.51 7.79 -2.39 -0.02 0.49 16 33 H 0.14 0.29 8.08 -2.38 -0.02 0.27 16 34 H 0.23 3.45 8.06 -2.91 -0.02 3.43 16 35 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.09 1.66 8.03 -2.39 -0.02 1.64 16 37 H 0.09 2.22 5.31 -2.38 -0.01 2.21 16 38 H 0.09 2.83 8.07 -2.39 -0.02 2.81 16 39 H 0.05 2.40 6.99 -2.39 -0.02 2.38 16 40 H 0.04 1.76 6.65 -2.39 -0.02 1.74 16 41 H 0.09 2.53 6.35 -2.39 -0.02 2.52 16 42 H 0.37 21.51 7.80 -92.71 -0.72 20.79 16 43 H 0.25 15.53 8.31 -92.71 -0.77 14.76 16 44 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 45 H 0.06 1.84 6.46 -2.38 -0.02 1.83 16 46 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 47 H 0.02 1.06 7.75 -2.39 -0.02 1.04 16 48 H 0.07 1.51 6.46 -2.39 -0.02 1.49 16 49 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 50 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 Total: -1.00 -79.11 409.79 5.62 -73.49 By element: Atomic # 1 Polarization: 32.79 SS G_CDS: 0.21 Total: 33.00 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: 8.14 Total: 5.49 kcal Atomic # 7 Polarization: -132.27 SS G_CDS: -4.69 Total: -136.96 kcal Atomic # 8 Polarization: -25.02 SS G_CDS: -0.07 Total: -25.09 kcal Atomic # 14 Polarization: 48.04 SS G_CDS: 2.03 Total: 50.07 kcal Total: -79.11 5.62 -73.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506477237.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.937 kcal (2) G-P(sol) polarization free energy of solvation -79.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds