Wall clock time and date at job start Tue Mar 31 2020 20:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50693 * 109.47211 * 2 1 4 4 N 1.30298 * 126.35018 * 270.15538 * 3 2 1 5 5 N 1.28525 * 110.05830 * 180.30993 * 4 3 2 6 6 C 1.31220 * 109.85948 * 359.72395 * 5 4 3 7 7 N 1.38580 * 126.47575 * 180.02562 * 6 5 4 8 8 C 1.46892 * 110.99905 * 293.12741 * 7 6 5 9 9 C 1.46900 * 110.99673 * 57.08171 * 7 6 5 10 10 H 1.08995 * 109.47609 * 299.99804 * 9 7 6 11 11 C 1.53001 * 109.47288 * 60.00286 * 9 7 6 12 12 C 1.50701 * 109.46824 * 179.97438 * 9 7 6 13 13 H 1.07997 * 120.00207 * 359.97438 * 12 9 7 14 14 C 1.37885 * 119.99773 * 180.02562 * 12 9 7 15 15 N 1.31510 * 120.00073 * 0.02562 * 14 12 9 16 16 Si 1.86799 * 119.99732 * 179.97438 * 14 12 9 17 17 H 1.48504 * 109.47166 * 0.02562 * 16 14 12 18 18 H 1.48509 * 109.46972 * 119.99919 * 16 14 12 19 19 H 1.48494 * 109.47525 * 239.99795 * 16 14 12 20 20 N 1.36464 * 107.05219 * 359.97438 * 6 5 4 21 21 C 1.46491 * 127.13498 * 180.02562 * 20 6 5 22 22 C 1.50697 * 109.47378 * 93.60821 * 21 20 6 23 23 O 1.21278 * 120.00352 * 359.97438 * 22 21 20 24 24 N 1.34777 * 119.99947 * 179.97438 * 22 21 20 25 25 C 1.46504 * 120.00207 * 180.02562 * 24 22 21 26 26 C 1.52999 * 109.47421 * 180.02562 * 25 24 22 27 27 C 1.53003 * 117.49720 * 243.62088 * 26 25 24 28 28 C 1.53002 * 59.99974 * 252.51229 * 27 26 25 29 29 H 1.08996 * 109.46722 * 299.99604 * 1 2 3 30 30 H 1.08990 * 109.47237 * 59.99834 * 1 2 3 31 31 H 1.09002 * 109.47011 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46965 * 239.99843 * 2 1 3 33 33 H 1.08995 * 109.47666 * 120.00253 * 2 1 3 34 34 H 1.08998 * 109.46994 * 66.03399 * 8 7 6 35 35 H 1.09001 * 109.47151 * 186.02966 * 8 7 6 36 36 H 1.08996 * 109.47285 * 306.02733 * 8 7 6 37 37 H 1.09004 * 109.47714 * 59.99479 * 11 9 7 38 38 H 1.08997 * 109.47173 * 180.02562 * 11 9 7 39 39 H 1.09005 * 109.47192 * 299.99952 * 11 9 7 40 40 H 0.96994 * 119.99887 * 180.02562 * 15 14 12 41 41 H 1.09000 * 109.47106 * 213.60710 * 21 20 6 42 42 H 1.09007 * 109.47552 * 333.60478 * 21 20 6 43 43 H 0.96997 * 120.00432 * 359.97438 * 24 22 21 44 44 H 1.09004 * 109.47188 * 300.00575 * 25 24 22 45 45 H 1.09007 * 109.46938 * 59.99537 * 25 24 22 46 46 H 1.08996 * 115.54745 * 29.32553 * 26 25 24 47 47 H 1.09000 * 117.50106 * 0.02562 * 27 26 25 48 48 H 1.09003 * 117.49737 * 145.01807 * 27 26 25 49 49 H 1.08997 * 117.49658 * 252.51353 * 28 27 26 50 50 H 1.08999 * 117.49432 * 107.49369 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.2871 2.1498 -1.0494 5 7 2.7054 3.3104 -0.6889 6 6 2.7347 3.3867 0.6207 7 7 3.1292 4.4812 1.3736 8 6 4.5643 4.7459 1.2057 9 6 2.3319 5.6677 1.0354 10 1 2.4626 5.9044 -0.0205 11 6 0.8544 5.3863 1.3159 12 6 2.7881 6.8348 1.8725 13 1 3.5898 6.7077 2.5849 14 6 2.1812 8.0646 1.7297 15 7 1.2039 8.2190 0.8634 16 14 2.7463 9.5111 2.7680 17 1 3.8525 9.0784 3.6593 18 1 3.2243 10.6011 1.8798 19 1 1.6118 10.0039 3.5896 20 7 2.3021 2.1849 1.1014 21 6 2.1620 1.7928 2.5058 22 6 0.7509 2.0584 2.9633 23 8 -0.0581 2.5293 2.1922 24 7 0.3879 1.7725 4.2294 25 6 -0.9840 2.0301 4.6740 26 6 -1.1302 1.6206 6.1409 27 6 -2.0985 0.4806 6.4630 28 6 -2.4636 1.9207 6.8286 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 4.7592 5.0537 0.1784 35 1 4.8694 5.5401 1.8870 36 1 5.1291 3.8403 1.4272 37 1 0.7236 5.1495 2.3718 38 1 0.2627 6.2665 1.0645 39 1 0.5240 4.5419 0.7107 40 1 0.7773 9.0842 0.7627 41 1 2.3841 0.7308 2.6104 42 1 2.8565 2.3709 3.1156 43 1 1.0348 1.3955 4.8461 44 1 -1.2064 3.0921 4.5696 45 1 -1.6782 1.4520 4.0640 46 1 -0.2248 1.6977 6.7429 47 1 -2.6310 0.0220 5.6298 48 1 -1.8301 -0.1928 7.2771 49 1 -2.4355 2.1948 7.8831 50 1 -3.2367 2.4097 6.2359 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001513778092.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:44 Heat of formation + Delta-G solvation = 81.943302 kcal Electronic energy + Delta-G solvation = -30712.127551 eV Core-core repulsion = 26777.352991 eV Total energy + Delta-G solvation = -3934.774560 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.48688 -39.68950 -37.75650 -36.99058 -34.67121 -34.23576 -33.58511 -32.64109 -29.30744 -29.03456 -28.50109 -26.44548 -25.47198 -24.28898 -23.78046 -22.72296 -21.73186 -21.27186 -21.13095 -19.89197 -19.35045 -17.49010 -17.14082 -16.40035 -16.08575 -15.78246 -15.49500 -15.27396 -14.69709 -14.64936 -14.45365 -14.27347 -13.91072 -13.69856 -13.55106 -13.40908 -13.06693 -12.45211 -12.30450 -12.21857 -11.87012 -11.77383 -11.71958 -11.62959 -11.13758 -11.06948 -11.02791 -10.87065 -10.85632 -10.70105 -10.51756 -10.39809 -10.22417 -10.11712 -10.02726 -9.93490 -9.44976 -9.12655 -8.97807 -8.45932 -8.30991 -7.66728 -6.01012 -4.07936 2.09970 2.59037 2.62001 3.09882 3.29037 3.36400 3.39207 3.44289 3.48340 4.32421 4.35800 4.50792 4.54557 4.56583 4.63854 4.66985 4.73313 4.86823 4.92756 5.10095 5.29242 5.30240 5.30788 5.38918 5.49335 5.55264 5.61256 5.75403 5.77458 5.78142 5.82329 5.86299 6.04973 6.26238 6.28220 6.33437 6.37200 6.49822 6.63303 6.96525 7.00643 7.17341 7.25361 7.36745 7.49720 7.77115 7.80818 8.03516 8.16635 8.29449 8.52549 8.95435 9.33938 9.56220 11.05646 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.008154 B = 0.004649 C = 0.003267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3433.160781 B = 6021.120034 C = 8569.609598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.027 4.027 3 C 0.170 3.830 4 N -0.290 5.290 5 N -0.318 5.318 6 C 0.392 3.608 7 N -0.475 5.475 8 C 0.050 3.950 9 C 0.226 3.774 10 H 0.020 0.980 11 C -0.119 4.119 12 C -0.511 4.511 13 H 0.065 0.935 14 C 0.063 3.937 15 N -0.885 5.885 16 Si 0.899 3.101 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 N -0.458 5.458 21 C 0.098 3.902 22 C 0.499 3.501 23 O -0.499 6.499 24 N -0.728 5.728 25 C 0.153 3.847 26 C -0.168 4.168 27 C -0.178 4.178 28 C -0.170 4.170 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.095 0.905 33 H 0.072 0.928 34 H 0.035 0.965 35 H 0.089 0.911 36 H 0.042 0.958 37 H 0.026 0.974 38 H 0.084 0.916 39 H 0.012 0.988 40 H 0.261 0.739 41 H 0.113 0.887 42 H 0.130 0.870 43 H 0.399 0.601 44 H 0.075 0.925 45 H 0.068 0.932 46 H 0.111 0.889 47 H 0.096 0.904 48 H 0.094 0.906 49 H 0.097 0.903 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.832 -19.640 11.878 23.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.067 4.067 3 C -0.098 4.098 4 N -0.129 5.129 5 N -0.160 5.160 6 C 0.037 3.963 7 N -0.202 5.202 8 C -0.098 4.098 9 C 0.122 3.878 10 H 0.038 0.962 11 C -0.178 4.178 12 C -0.550 4.550 13 H 0.083 0.917 14 C -0.140 4.140 15 N -0.524 5.524 16 Si 0.727 3.273 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.211 1.211 20 N -0.153 5.153 21 C -0.030 4.030 22 C 0.282 3.718 23 O -0.371 6.371 24 N -0.383 5.383 25 C 0.030 3.970 26 C -0.187 4.187 27 C -0.215 4.215 28 C -0.208 4.208 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.113 0.887 33 H 0.091 0.909 34 H 0.054 0.946 35 H 0.107 0.893 36 H 0.061 0.939 37 H 0.045 0.955 38 H 0.103 0.897 39 H 0.031 0.969 40 H 0.071 0.929 41 H 0.131 0.869 42 H 0.147 0.853 43 H 0.233 0.767 44 H 0.093 0.907 45 H 0.086 0.914 46 H 0.129 0.871 47 H 0.114 0.886 48 H 0.113 0.887 49 H 0.116 0.884 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.500 -18.800 10.235 21.551 hybrid contribution 0.438 0.592 1.676 1.830 sum -2.062 -18.208 11.911 21.855 Atomic orbital electron populations 1.21766 0.93691 1.01566 1.03631 1.19860 0.96634 0.86687 1.03475 1.24528 1.05207 0.97280 0.82766 1.73927 1.15699 0.99216 1.24082 1.74695 1.20423 1.12059 1.08787 1.22769 0.98177 0.87077 0.88313 1.59290 1.05805 1.03978 1.51170 1.22207 0.85615 1.00426 1.01560 1.19448 0.89455 0.82765 0.96159 0.96246 1.21680 0.98027 0.99993 0.98057 1.21088 1.18971 0.92966 1.21936 0.91671 1.24914 0.94915 0.98689 0.95458 1.69933 1.23606 1.24003 1.34816 0.86434 0.78504 0.82321 0.80067 1.19727 1.20995 1.21067 1.45774 1.50583 1.12689 1.06213 1.21450 0.96565 1.03160 0.81807 1.20650 0.90106 0.78707 0.82308 1.90833 1.52270 1.40814 1.53213 1.45794 1.13159 1.66876 1.12436 1.20857 0.82955 1.01637 0.91559 1.22449 0.95455 1.04451 0.96307 1.23091 1.03212 0.91543 1.03642 1.22959 0.97753 0.98721 1.01347 0.92020 0.91806 0.92101 0.88696 0.90912 0.94621 0.89270 0.93933 0.95517 0.89699 0.96923 0.92865 0.86880 0.85253 0.76655 0.90709 0.91389 0.87110 0.88570 0.88708 0.88410 0.88334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.89 37.16 0.37 -1.43 16 2 C -0.03 -0.32 6.31 -27.89 -0.18 -0.49 16 3 C 0.17 2.95 7.32 -154.02 -1.13 1.82 16 4 N -0.29 -6.26 12.18 32.99 0.40 -5.85 16 5 N -0.32 -7.62 12.08 30.32 0.37 -7.26 16 6 C 0.39 8.53 5.05 -318.86 -1.61 6.92 16 7 N -0.47 -10.66 4.66 -176.09 -0.82 -11.48 16 8 C 0.05 0.99 9.14 60.06 0.55 1.54 16 9 C 0.23 6.04 1.98 -68.86 -0.14 5.90 16 10 H 0.02 0.60 8.05 -51.93 -0.42 0.19 16 11 C -0.12 -3.25 8.47 37.16 0.31 -2.93 16 12 C -0.51 -13.97 7.95 -34.44 -0.27 -14.25 16 13 H 0.07 1.72 6.40 -52.49 -0.34 1.38 16 14 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 15 N -0.89 -26.01 11.32 55.43 0.63 -25.38 16 16 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 17 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 N -0.46 -8.03 2.30 -115.37 -0.27 -8.29 16 21 C 0.10 1.23 6.47 -5.20 -0.03 1.19 16 22 C 0.50 6.95 7.74 -10.99 -0.09 6.87 16 23 O -0.50 -9.48 14.27 5.56 0.08 -9.40 16 24 N -0.73 -7.22 5.56 -60.29 -0.33 -7.56 16 25 C 0.15 1.56 5.95 -4.04 -0.02 1.54 16 26 C -0.17 -1.24 5.85 -90.62 -0.53 -1.77 16 27 C -0.18 -1.14 10.18 -26.73 -0.27 -1.41 16 28 C -0.17 -1.21 10.25 -26.73 -0.27 -1.48 16 29 H 0.06 0.86 6.73 -51.93 -0.35 0.51 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.07 0.64 7.34 -51.93 -0.38 0.26 16 34 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.09 1.76 6.31 -51.93 -0.33 1.43 16 36 H 0.04 0.72 8.10 -51.93 -0.42 0.29 16 37 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.08 2.52 6.07 -51.93 -0.32 2.21 16 39 H 0.01 0.33 6.64 -51.93 -0.34 -0.01 16 40 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 41 H 0.11 0.88 7.35 -51.93 -0.38 0.50 16 42 H 0.13 1.51 8.14 -51.93 -0.42 1.09 16 43 H 0.40 2.55 8.40 -40.82 -0.34 2.21 16 44 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.07 0.73 7.88 -51.93 -0.41 0.32 16 46 H 0.11 0.71 8.04 -51.93 -0.42 0.29 16 47 H 0.10 0.62 8.03 -51.93 -0.42 0.21 16 48 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 50 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 406.13 15.07 6.12 6.12 Total: -1.00 -36.48 406.13 -10.48 -46.96 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -8.22 Total: 2.27 kcal Atomic # 6 Polarization: 7.07 SS G_CDS: -3.41 Total: 3.66 kcal Atomic # 7 Polarization: -65.80 SS G_CDS: -0.02 Total: -65.83 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.08 Total: -9.40 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -36.48 -10.48 -46.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001513778092.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.900 kcal (2) G-P(sol) polarization free energy of solvation -36.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds