Wall clock time and date at job start Tue Mar 31 2020 20:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50693 * 109.47211 * 2 1 4 4 N 1.30298 * 126.35018 * 270.15538 * 3 2 1 5 5 N 1.28525 * 110.05830 * 180.30993 * 4 3 2 6 6 C 1.31220 * 109.85948 * 359.72395 * 5 4 3 7 7 N 1.38580 * 126.47575 * 180.02562 * 6 5 4 8 8 C 1.46892 * 110.99905 * 293.12741 * 7 6 5 9 9 C 1.46900 * 110.99673 * 57.08171 * 7 6 5 10 10 H 1.08995 * 109.47609 * 299.99804 * 9 7 6 11 11 C 1.53001 * 109.47288 * 60.00286 * 9 7 6 12 12 C 1.50701 * 109.46824 * 179.97438 * 9 7 6 13 13 H 1.07997 * 120.00207 * 359.97438 * 12 9 7 14 14 C 1.37885 * 119.99773 * 180.02562 * 12 9 7 15 15 N 1.31510 * 120.00073 * 0.02562 * 14 12 9 16 16 Si 1.86799 * 119.99732 * 179.97438 * 14 12 9 17 17 H 1.48504 * 109.47166 * 0.02562 * 16 14 12 18 18 H 1.48509 * 109.46972 * 119.99919 * 16 14 12 19 19 H 1.48494 * 109.47525 * 239.99795 * 16 14 12 20 20 N 1.36464 * 107.05219 * 359.97438 * 6 5 4 21 21 C 1.46491 * 127.13498 * 180.02562 * 20 6 5 22 22 C 1.50697 * 109.47378 * 93.60821 * 21 20 6 23 23 O 1.21278 * 120.00352 * 359.97438 * 22 21 20 24 24 N 1.34777 * 119.99947 * 179.97438 * 22 21 20 25 25 C 1.46504 * 120.00207 * 180.02562 * 24 22 21 26 26 C 1.52999 * 109.47421 * 180.02562 * 25 24 22 27 27 C 1.53003 * 117.49720 * 243.62088 * 26 25 24 28 28 C 1.53002 * 59.99974 * 252.51229 * 27 26 25 29 29 H 1.08996 * 109.46722 * 299.99604 * 1 2 3 30 30 H 1.08990 * 109.47237 * 59.99834 * 1 2 3 31 31 H 1.09002 * 109.47011 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46965 * 239.99843 * 2 1 3 33 33 H 1.08995 * 109.47666 * 120.00253 * 2 1 3 34 34 H 1.08998 * 109.46994 * 66.03399 * 8 7 6 35 35 H 1.09001 * 109.47151 * 186.02966 * 8 7 6 36 36 H 1.08996 * 109.47285 * 306.02733 * 8 7 6 37 37 H 1.09004 * 109.47714 * 59.99479 * 11 9 7 38 38 H 1.08997 * 109.47173 * 180.02562 * 11 9 7 39 39 H 1.09005 * 109.47192 * 299.99952 * 11 9 7 40 40 H 0.96994 * 119.99887 * 180.02562 * 15 14 12 41 41 H 1.09000 * 109.47106 * 213.60710 * 21 20 6 42 42 H 1.09007 * 109.47552 * 333.60478 * 21 20 6 43 43 H 0.96997 * 120.00432 * 359.97438 * 24 22 21 44 44 H 1.09004 * 109.47188 * 300.00575 * 25 24 22 45 45 H 1.09007 * 109.46938 * 59.99537 * 25 24 22 46 46 H 1.08996 * 115.54745 * 29.32553 * 26 25 24 47 47 H 1.09000 * 117.50106 * 0.02562 * 27 26 25 48 48 H 1.09003 * 117.49737 * 145.01807 * 27 26 25 49 49 H 1.08997 * 117.49658 * 252.51353 * 28 27 26 50 50 H 1.08999 * 117.49432 * 107.49369 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.2871 2.1498 -1.0494 5 7 2.7054 3.3104 -0.6889 6 6 2.7347 3.3867 0.6207 7 7 3.1292 4.4812 1.3736 8 6 4.5643 4.7459 1.2057 9 6 2.3319 5.6677 1.0354 10 1 2.4626 5.9044 -0.0205 11 6 0.8544 5.3863 1.3159 12 6 2.7881 6.8348 1.8725 13 1 3.5898 6.7077 2.5849 14 6 2.1812 8.0646 1.7297 15 7 1.2039 8.2190 0.8634 16 14 2.7463 9.5111 2.7680 17 1 3.8525 9.0784 3.6593 18 1 3.2243 10.6011 1.8798 19 1 1.6118 10.0039 3.5896 20 7 2.3021 2.1849 1.1014 21 6 2.1620 1.7928 2.5058 22 6 0.7509 2.0584 2.9633 23 8 -0.0581 2.5293 2.1922 24 7 0.3879 1.7725 4.2294 25 6 -0.9840 2.0301 4.6740 26 6 -1.1302 1.6206 6.1409 27 6 -2.0985 0.4806 6.4630 28 6 -2.4636 1.9207 6.8286 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 4.7592 5.0537 0.1784 35 1 4.8694 5.5401 1.8870 36 1 5.1291 3.8403 1.4272 37 1 0.7236 5.1495 2.3718 38 1 0.2627 6.2665 1.0645 39 1 0.5240 4.5419 0.7107 40 1 0.7773 9.0842 0.7627 41 1 2.3841 0.7308 2.6104 42 1 2.8565 2.3709 3.1156 43 1 1.0348 1.3955 4.8461 44 1 -1.2064 3.0921 4.5696 45 1 -1.6782 1.4520 4.0640 46 1 -0.2248 1.6977 6.7429 47 1 -2.6310 0.0220 5.6298 48 1 -1.8301 -0.1928 7.2771 49 1 -2.4355 2.1948 7.8831 50 1 -3.2367 2.4097 6.2359 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001513778092.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:43 Heat of formation + Delta-G solvation = 57.263308 kcal Electronic energy + Delta-G solvation = -30713.197756 eV Core-core repulsion = 26777.352991 eV Total energy + Delta-G solvation = -3935.844765 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.98252 -40.76112 -38.82977 -38.45143 -35.96694 -35.23382 -35.13384 -34.29892 -31.37928 -30.16656 -30.00200 -27.62990 -27.24110 -26.10799 -24.98044 -23.57811 -23.24140 -22.33516 -21.99014 -21.18692 -20.91742 -18.62728 -18.55004 -18.08498 -17.43318 -17.11979 -16.72088 -16.64626 -16.31964 -15.81897 -15.66730 -15.42802 -15.02260 -14.95570 -14.91406 -14.51561 -14.36401 -14.19720 -13.83440 -13.41541 -13.25478 -13.03602 -12.92718 -12.73334 -12.64206 -12.43999 -12.38275 -12.36878 -12.23170 -12.17233 -12.11243 -12.03969 -11.83045 -11.50703 -11.38095 -11.14132 -11.07589 -10.65211 -10.60240 -10.07998 -9.91124 -9.56510 -8.15255 -6.30873 0.68240 1.31227 1.43265 1.43683 1.53238 1.56740 1.86937 2.12742 2.40622 2.88318 2.99936 3.16192 3.38103 3.65683 3.70752 3.70974 3.93328 4.01328 4.09816 4.13935 4.17029 4.25721 4.31499 4.45138 4.57153 4.62686 4.65974 4.70504 4.73826 4.79851 4.82048 4.87764 4.90838 4.91947 5.02141 5.04440 5.11608 5.15290 5.18543 5.27195 5.31961 5.36518 5.44639 5.57205 5.62721 5.86853 5.96532 6.12021 6.47948 6.62323 6.80689 7.21298 7.38503 7.79189 8.92442 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.008154 B = 0.004649 C = 0.003267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3433.160781 B = 6021.120034 C = 8569.609598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.026 4.026 3 C 0.193 3.807 4 N -0.338 5.338 5 N -0.367 5.367 6 C 0.372 3.628 7 N -0.464 5.464 8 C 0.052 3.948 9 C 0.239 3.761 10 H -0.034 1.034 11 C -0.087 4.087 12 C -0.520 4.520 13 H 0.079 0.921 14 C 0.008 3.992 15 N -0.925 5.925 16 Si 0.973 3.027 17 H -0.254 1.254 18 H -0.283 1.283 19 H -0.282 1.282 20 N -0.452 5.452 21 C 0.089 3.911 22 C 0.495 3.505 23 O -0.559 6.559 24 N -0.705 5.705 25 C 0.156 3.844 26 C -0.168 4.168 27 C -0.164 4.164 28 C -0.180 4.180 29 H 0.041 0.959 30 H 0.032 0.968 31 H 0.100 0.900 32 H 0.112 0.888 33 H 0.120 0.880 34 H 0.012 0.988 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.025 0.975 38 H 0.054 0.946 39 H -0.005 1.005 40 H 0.262 0.738 41 H 0.174 0.826 42 H 0.143 0.857 43 H 0.421 0.579 44 H 0.041 0.959 45 H 0.060 0.940 46 H 0.128 0.872 47 H 0.093 0.907 48 H 0.113 0.887 49 H 0.109 0.891 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.407 -22.402 15.342 27.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.066 4.066 3 C -0.076 4.076 4 N -0.177 5.177 5 N -0.209 5.209 6 C 0.014 3.986 7 N -0.191 5.191 8 C -0.095 4.095 9 C 0.133 3.867 10 H -0.016 1.016 11 C -0.146 4.146 12 C -0.559 4.559 13 H 0.097 0.903 14 C -0.191 4.191 15 N -0.564 5.564 16 Si 0.797 3.203 17 H -0.177 1.177 18 H -0.209 1.209 19 H -0.208 1.208 20 N -0.145 5.145 21 C -0.036 4.036 22 C 0.280 3.720 23 O -0.437 6.437 24 N -0.359 5.359 25 C 0.032 3.968 26 C -0.187 4.187 27 C -0.201 4.201 28 C -0.218 4.218 29 H 0.061 0.939 30 H 0.051 0.949 31 H 0.119 0.881 32 H 0.130 0.870 33 H 0.138 0.862 34 H 0.031 0.969 35 H 0.111 0.889 36 H 0.098 0.902 37 H 0.044 0.956 38 H 0.073 0.927 39 H 0.014 0.986 40 H 0.071 0.929 41 H 0.191 0.809 42 H 0.160 0.840 43 H 0.259 0.741 44 H 0.059 0.941 45 H 0.078 0.922 46 H 0.146 0.854 47 H 0.112 0.888 48 H 0.132 0.868 49 H 0.128 0.872 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.039 -21.623 13.769 25.656 hybrid contribution -0.089 1.319 0.586 1.446 sum -1.128 -20.303 14.356 24.891 Atomic orbital electron populations 1.21706 0.93808 1.03302 1.01172 1.20251 0.96203 0.83421 1.06685 1.25629 1.01587 0.98667 0.81721 1.73820 1.18286 0.99273 1.26274 1.74541 1.21925 1.13775 1.10637 1.22651 0.99689 0.88134 0.88109 1.59196 1.06426 1.02698 1.50764 1.22256 0.84667 1.02337 1.00232 1.19046 0.89671 0.84939 0.93052 1.01646 1.21310 0.98339 0.97649 0.97257 1.21386 1.19234 0.93277 1.21968 0.90312 1.25887 0.94790 1.01812 0.96570 1.70106 1.24980 1.24732 1.36590 0.85280 0.78438 0.78201 0.78341 1.17721 1.20903 1.20820 1.45895 1.49253 1.11057 1.08302 1.21998 0.95715 1.06932 0.78985 1.20984 0.90251 0.77906 0.82858 1.90831 1.53977 1.43794 1.55059 1.45611 1.13533 1.65281 1.11499 1.20767 0.82892 0.99526 0.93631 1.22370 0.96424 1.05568 0.94315 1.23147 1.01835 0.91195 1.03882 1.23043 0.97270 0.99650 1.01810 0.93934 0.94872 0.88146 0.86961 0.86151 0.96944 0.88945 0.90223 0.95556 0.92697 0.98573 0.92887 0.80920 0.83964 0.74109 0.94098 0.92179 0.85366 0.88823 0.86824 0.87233 0.89452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 9.89 71.98 0.71 -2.45 16 2 C -0.03 -0.54 6.31 29.85 0.19 -0.35 16 3 C 0.19 6.51 7.32 137.64 1.01 7.52 16 4 N -0.34 -14.99 12.18 -49.54 -0.60 -15.59 16 5 N -0.37 -18.43 12.08 -58.00 -0.70 -19.13 16 6 C 0.37 16.47 5.05 260.11 1.31 17.79 16 7 N -0.46 -21.16 4.66 -711.02 -3.31 -24.47 16 8 C 0.05 2.08 9.14 127.69 1.17 3.25 16 9 C 0.24 13.34 1.98 44.17 0.09 13.43 16 10 H -0.03 -2.25 8.05 -2.39 -0.02 -2.27 16 11 C -0.09 -5.01 8.47 71.98 0.61 -4.40 16 12 C -0.52 -28.92 7.95 25.60 0.20 -28.72 16 13 H 0.08 4.08 6.40 -2.91 -0.02 4.07 16 14 C 0.01 0.46 5.30 84.66 0.45 0.91 16 15 N -0.92 -56.50 11.32 21.45 0.24 -56.26 16 16 Si 0.97 43.73 29.54 68.60 2.03 45.76 16 17 H -0.25 -10.55 7.11 99.48 0.71 -9.85 16 18 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 19 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 20 N -0.45 -15.32 2.30 -518.92 -1.19 -16.51 16 21 C 0.09 1.95 6.47 85.63 0.55 2.50 16 22 C 0.50 13.09 7.74 87.66 0.68 13.77 16 23 O -0.56 -21.71 14.27 -3.02 -0.04 -21.75 16 24 N -0.70 -12.45 5.56 -463.05 -2.57 -15.03 16 25 C 0.16 3.08 5.95 86.38 0.51 3.60 16 26 C -0.17 -2.13 5.85 -10.79 -0.06 -2.20 16 27 C -0.16 -1.67 10.18 30.60 0.31 -1.36 16 28 C -0.18 -2.29 10.25 30.60 0.31 -1.98 16 29 H 0.04 1.13 6.73 -2.39 -0.02 1.11 16 30 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.11 2.00 8.14 -2.38 -0.02 1.99 16 33 H 0.12 1.38 7.34 -2.39 -0.02 1.36 16 34 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.09 3.57 6.31 -2.39 -0.02 3.56 16 36 H 0.08 2.55 8.10 -2.39 -0.02 2.53 16 37 H 0.03 1.44 8.14 -2.38 -0.02 1.42 16 38 H 0.05 3.46 6.07 -2.39 -0.01 3.45 16 39 H 0.00 -0.29 6.64 -2.38 -0.02 -0.30 16 40 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 41 H 0.17 1.64 7.35 -2.39 -0.02 1.62 16 42 H 0.14 2.81 8.14 -2.38 -0.02 2.79 16 43 H 0.42 3.76 8.40 -92.71 -0.78 2.98 16 44 H 0.04 1.10 8.14 -2.38 -0.02 1.08 16 45 H 0.06 1.29 7.88 -2.38 -0.02 1.27 16 46 H 0.13 1.20 8.04 -2.39 -0.02 1.18 16 47 H 0.09 1.02 8.03 -2.39 -0.02 1.00 16 48 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 49 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 50 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -88.10 406.13 2.06 -86.04 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: 0.17 Total: 15.63 kcal Atomic # 6 Polarization: 13.27 SS G_CDS: 8.05 Total: 21.32 kcal Atomic # 7 Polarization: -138.85 SS G_CDS: -8.14 Total: -146.99 kcal Atomic # 8 Polarization: -21.71 SS G_CDS: -0.04 Total: -21.75 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -88.10 2.06 -86.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001513778092.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.303 kcal (2) G-P(sol) polarization free energy of solvation -88.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds