Wall clock time and date at job start Tue Mar 31 2020 20:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50701 * 109.47171 * 2 1 4 4 N 1.30294 * 126.34744 * 269.95587 * 3 2 1 5 5 N 1.28534 * 110.05432 * 179.76029 * 4 3 2 6 6 C 1.31224 * 109.85717 * 0.45860 * 5 4 3 7 7 N 1.38567 * 126.47094 * 179.81875 * 6 5 4 8 8 C 1.46900 * 111.00227 * 123.63750 * 7 6 5 9 9 C 1.50703 * 109.47455 * 169.99878 * 8 7 6 10 10 H 1.07999 * 119.99885 * 0.02562 * 9 8 7 11 11 C 1.37875 * 120.00307 * 180.02562 * 9 8 7 12 12 N 1.31522 * 119.99681 * 359.97438 * 11 9 8 13 13 Si 1.86794 * 120.00301 * 180.02562 * 11 9 8 14 14 H 1.48507 * 109.46820 * 59.99662 * 13 11 9 15 15 H 1.48495 * 109.47373 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47094 * 300.00067 * 13 11 9 17 17 C 1.46903 * 111.00282 * 359.68753 * 7 6 5 18 18 C 1.53003 * 109.47061 * 293.95588 * 17 7 6 19 19 C 1.53001 * 117.51964 * 116.28123 * 18 17 7 20 20 C 1.52999 * 60.00190 * 107.47982 * 19 18 17 21 21 N 1.36456 * 107.05182 * 359.55676 * 6 5 4 22 22 C 1.46499 * 127.12929 * 180.28774 * 21 6 5 23 23 C 1.50695 * 109.47276 * 90.00128 * 22 21 6 24 24 O 1.21280 * 119.99982 * 359.97438 * 23 22 21 25 25 N 1.34777 * 120.00045 * 179.97438 * 23 22 21 26 26 C 1.46501 * 120.00089 * 179.97438 * 25 23 22 27 27 C 1.46506 * 120.00070 * 359.97438 * 25 23 22 28 28 H 1.09000 * 109.47250 * 59.99502 * 1 2 3 29 29 H 1.09002 * 109.47266 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47113 * 300.00238 * 1 2 3 31 31 H 1.08995 * 109.46994 * 240.00279 * 2 1 3 32 32 H 1.09004 * 109.47202 * 119.99983 * 2 1 3 33 33 H 1.08995 * 109.47424 * 290.00429 * 8 7 6 34 34 H 1.09005 * 109.46605 * 50.00579 * 8 7 6 35 35 H 0.96994 * 119.99642 * 180.02562 * 12 11 9 36 36 H 1.08999 * 109.47623 * 173.95090 * 17 7 6 37 37 H 1.09005 * 109.46959 * 53.95104 * 17 7 6 38 38 H 1.09002 * 115.54973 * 330.57907 * 18 17 7 39 39 H 1.09001 * 117.49733 * 214.97413 * 19 18 17 40 40 H 1.08995 * 117.49577 * 359.97438 * 19 18 17 41 41 H 1.09004 * 117.50150 * 252.51496 * 20 19 18 42 42 H 1.09004 * 117.49681 * 107.48417 * 20 19 18 43 43 H 1.09004 * 109.46320 * 209.99641 * 22 21 6 44 44 H 1.08997 * 109.47488 * 329.99385 * 22 21 6 45 45 H 1.08998 * 109.47052 * 90.00229 * 26 25 23 46 46 H 1.09004 * 109.47022 * 210.00065 * 26 25 23 47 47 H 1.08996 * 109.47412 * 329.99744 * 26 25 23 48 48 H 1.09001 * 109.46676 * 60.00117 * 27 25 23 49 49 H 1.08998 * 109.47034 * 179.97438 * 27 25 23 50 50 H 1.09002 * 109.47076 * 300.00370 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2905 2.1486 -1.0494 5 7 2.6967 3.3135 -0.6888 6 6 2.7289 3.3887 0.6208 7 7 3.1171 4.4854 1.3736 8 6 2.0531 4.8898 2.3023 9 6 2.5907 5.9156 3.2664 10 1 3.6198 6.2356 3.1961 11 6 1.7689 6.4457 4.2383 12 7 0.5156 6.0564 4.3236 13 14 2.4352 7.7178 5.4329 14 1 2.9100 8.9052 4.6777 15 1 1.3597 8.1265 6.3717 16 1 3.5656 7.1337 6.1985 17 6 3.5136 5.6043 0.5082 18 6 4.7789 5.2274 -0.2650 19 6 4.6759 5.1384 -1.7890 20 6 5.4202 6.3067 -1.1396 21 7 2.3025 2.1849 1.1013 22 6 2.1626 1.7927 2.5059 23 6 0.7752 2.1323 2.9865 24 8 -0.0184 2.6512 2.2303 25 7 0.4164 1.8592 4.2566 26 6 -0.9321 2.1898 4.7240 27 6 1.3749 1.2318 5.1699 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.2238 5.3190 1.7401 34 1 1.7040 4.0183 2.8563 35 1 -0.0627 6.4296 5.0071 36 1 3.7103 6.4848 1.1199 37 1 2.7096 5.8225 -0.1948 38 1 5.4445 4.5247 0.2363 39 1 5.2736 4.3770 -2.2902 40 1 3.7064 5.3479 -2.2409 41 1 4.9405 7.2852 -1.1642 42 1 6.5077 6.3140 -1.2135 43 1 2.3277 0.7195 2.6016 44 1 2.8968 2.3283 3.1076 45 1 -1.5956 1.3433 4.5473 46 1 -0.9027 2.4120 5.7907 47 1 -1.3014 3.0602 4.1817 48 1 2.2495 1.8736 5.2755 49 1 0.9086 1.0904 6.1449 50 1 1.6797 0.2652 4.7688 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001513820942.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:17 Heat of formation + Delta-G solvation = 91.830634 kcal Electronic energy + Delta-G solvation = -31707.573760 eV Core-core repulsion = 27773.227947 eV Total energy + Delta-G solvation = -3934.345813 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.41926 -39.50545 -37.75843 -35.65003 -35.31187 -34.50601 -33.31643 -32.55273 -29.14359 -28.66609 -27.44274 -27.28781 -25.67206 -25.20842 -23.78012 -22.19254 -21.78876 -20.83676 -20.50271 -19.54599 -18.94956 -17.33242 -16.78468 -16.51022 -15.85501 -15.61517 -15.44972 -15.16113 -14.72282 -14.53276 -14.31993 -13.90140 -13.73231 -13.39939 -13.23420 -13.17445 -12.64798 -12.60146 -12.54808 -12.28788 -12.06833 -11.81332 -11.75025 -11.71063 -11.51433 -11.06951 -11.05454 -10.96797 -10.92421 -10.78818 -10.50347 -10.26371 -10.24943 -9.88983 -9.72806 -9.53151 -9.31805 -9.23460 -8.85224 -8.53789 -8.46336 -7.29863 -6.16676 -4.21895 2.26341 2.75422 2.84586 3.22483 3.27530 3.29104 3.31533 3.53357 4.25880 4.37721 4.56404 4.60545 4.66043 4.76926 4.97803 5.09106 5.17298 5.22145 5.30671 5.34336 5.37801 5.51605 5.54688 5.58076 5.60710 5.67864 5.75531 5.77289 5.85428 5.95446 6.01840 6.09401 6.22417 6.24706 6.35582 6.38437 6.44903 6.49391 6.61142 6.62404 6.67431 6.88219 7.03808 7.14158 7.24729 7.48262 7.63951 7.76250 7.93530 8.30243 8.41239 8.83204 9.41643 9.46916 10.91726 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.007784 B = 0.006946 C = 0.003984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3596.149008 B = 4030.376703 C = 7026.253062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.025 4.025 3 C 0.161 3.839 4 N -0.286 5.286 5 N -0.329 5.329 6 C 0.396 3.604 7 N -0.454 5.454 8 C 0.196 3.804 9 C -0.523 4.523 10 H 0.067 0.933 11 C 0.064 3.936 12 N -0.882 5.882 13 Si 0.898 3.102 14 H -0.275 1.275 15 H -0.287 1.287 16 H -0.276 1.276 17 C 0.111 3.889 18 C -0.135 4.135 19 C -0.149 4.149 20 C -0.191 4.191 21 N -0.469 5.469 22 C 0.095 3.905 23 C 0.508 3.492 24 O -0.506 6.506 25 N -0.614 5.614 26 C 0.095 3.905 27 C 0.077 3.923 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.093 0.907 32 H 0.071 0.929 33 H 0.005 0.995 34 H 0.042 0.958 35 H 0.262 0.738 36 H 0.098 0.902 37 H 0.045 0.955 38 H 0.098 0.902 39 H 0.081 0.919 40 H 0.094 0.906 41 H 0.089 0.911 42 H 0.085 0.915 43 H 0.112 0.888 44 H 0.128 0.872 45 H 0.045 0.955 46 H 0.066 0.934 47 H 0.084 0.916 48 H 0.066 0.934 49 H 0.078 0.922 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.640 -12.613 0.788 12.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.065 4.065 3 C -0.107 4.107 4 N -0.125 5.125 5 N -0.174 5.174 6 C 0.040 3.960 7 N -0.177 5.177 8 C 0.073 3.927 9 C -0.562 4.562 10 H 0.085 0.915 11 C -0.140 4.140 12 N -0.520 5.520 13 Si 0.726 3.274 14 H -0.200 1.200 15 H -0.213 1.213 16 H -0.202 1.202 17 C -0.016 4.016 18 C -0.154 4.154 19 C -0.186 4.186 20 C -0.229 4.229 21 N -0.165 5.165 22 C -0.033 4.033 23 C 0.294 3.706 24 O -0.379 6.379 25 N -0.349 5.349 26 C -0.048 4.048 27 C -0.067 4.067 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.112 0.888 32 H 0.089 0.911 33 H 0.023 0.977 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.116 0.884 37 H 0.063 0.937 38 H 0.116 0.884 39 H 0.100 0.900 40 H 0.113 0.887 41 H 0.108 0.892 42 H 0.104 0.896 43 H 0.130 0.870 44 H 0.146 0.854 45 H 0.064 0.936 46 H 0.085 0.915 47 H 0.103 0.897 48 H 0.084 0.916 49 H 0.097 0.903 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.572 -11.971 -0.665 12.262 hybrid contribution -0.377 0.573 2.107 2.216 sum 2.195 -11.398 1.442 11.697 Atomic orbital electron populations 1.21750 0.93870 1.01497 1.03410 1.19820 0.96475 0.86908 1.03317 1.24351 1.06354 0.97513 0.82501 1.73818 1.15294 0.99339 1.24003 1.74659 1.24073 1.12216 1.06447 1.23063 0.96050 0.87223 0.89703 1.58967 1.38837 1.03587 1.16350 1.20102 0.86279 0.97093 0.89224 1.21025 0.97770 1.23134 1.14222 0.91486 1.24945 0.94734 0.96766 0.97510 1.70003 1.05145 1.42881 1.33939 0.86560 0.78399 0.81812 0.80671 1.20044 1.21307 1.20150 1.21540 0.94382 0.92018 0.93667 1.22135 0.99035 1.01336 0.92897 1.22769 1.01372 0.98988 0.95464 1.22977 0.98943 0.94678 1.06310 1.45468 1.52555 1.12041 1.06421 1.21653 0.97554 1.02812 0.81259 1.20345 0.89206 0.78808 0.82289 1.90795 1.52541 1.40441 1.54160 1.47476 1.14491 1.62055 1.10878 1.21597 0.81982 1.01273 0.99942 1.21833 0.93580 0.97166 0.94108 0.91902 0.92141 0.92210 0.88828 0.91053 0.97654 0.93990 0.92809 0.88410 0.93651 0.88425 0.90012 0.88709 0.89236 0.89619 0.87041 0.85374 0.93618 0.91499 0.89678 0.91583 0.90271 0.92451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.89 37.16 0.37 -1.53 16 2 C -0.03 -0.33 6.31 -27.88 -0.18 -0.50 16 3 C 0.16 2.90 7.32 -154.02 -1.13 1.77 16 4 N -0.29 -5.98 12.18 32.99 0.40 -5.58 16 5 N -0.33 -7.29 9.33 30.31 0.28 -7.01 16 6 C 0.40 8.64 6.79 -318.88 -2.17 6.47 16 7 N -0.45 -10.22 4.56 -175.87 -0.80 -11.02 16 8 C 0.20 5.02 4.28 -4.97 -0.02 4.99 16 9 C -0.52 -13.83 8.37 -34.44 -0.29 -14.12 16 10 H 0.07 1.74 7.18 -52.49 -0.38 1.37 16 11 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 12 N -0.88 -24.48 13.29 55.43 0.74 -23.75 16 13 Si 0.90 20.44 29.54 -169.99 -5.02 15.42 16 14 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 15 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 16 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 17 C 0.11 2.33 4.77 -3.82 -0.02 2.31 16 18 C -0.14 -2.45 4.87 -90.61 -0.44 -2.89 16 19 C -0.15 -2.50 8.88 -26.73 -0.24 -2.74 16 20 C -0.19 -2.92 10.25 -26.73 -0.27 -3.19 16 21 N -0.47 -8.90 2.29 -115.37 -0.26 -9.16 16 22 C 0.10 1.50 4.44 -5.20 -0.02 1.48 16 23 C 0.51 9.15 5.61 -10.99 -0.06 9.09 16 24 O -0.51 -11.44 14.59 5.56 0.08 -11.36 16 25 N -0.61 -9.17 3.27 -189.51 -0.62 -9.79 16 26 C 0.09 1.37 10.41 59.85 0.62 1.99 16 27 C 0.08 0.78 9.74 59.85 0.58 1.37 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.91 7.36 -51.93 -0.38 0.53 16 31 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 32 H 0.07 0.73 7.27 -51.93 -0.38 0.35 16 33 H 0.01 0.16 8.12 -51.93 -0.42 -0.26 16 34 H 0.04 1.07 3.18 -51.93 -0.17 0.90 16 35 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 36 H 0.10 2.11 6.65 -51.93 -0.35 1.76 16 37 H 0.05 1.01 7.64 -51.93 -0.40 0.62 16 38 H 0.10 1.82 8.14 -51.93 -0.42 1.39 16 39 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 40 H 0.09 1.70 8.03 -51.93 -0.42 1.29 16 41 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 42 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.11 1.24 6.97 -51.93 -0.36 0.88 16 44 H 0.13 2.07 7.45 -51.93 -0.39 1.69 16 45 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.07 0.83 7.92 -51.93 -0.41 0.42 16 47 H 0.08 1.58 7.42 -51.93 -0.39 1.19 16 48 H 0.07 0.72 7.85 -51.93 -0.41 0.31 16 49 H 0.08 0.65 7.79 -51.93 -0.40 0.25 16 50 H 0.06 0.43 7.85 -51.93 -0.41 0.02 16 LS Contribution 399.91 15.07 6.03 6.03 Total: -1.00 -33.86 399.91 -10.70 -44.57 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -8.17 Total: 5.54 kcal Atomic # 6 Polarization: 9.47 SS G_CDS: -3.36 Total: 6.11 kcal Atomic # 7 Polarization: -66.05 SS G_CDS: -0.27 Total: -66.31 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: 0.08 Total: -11.36 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.86 -10.70 -44.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001513820942.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.398 kcal (2) G-P(sol) polarization free energy of solvation -33.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds