Wall clock time and date at job start Tue Mar 31 2020 20:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50701 * 109.47171 * 2 1 4 4 N 1.30294 * 126.34744 * 269.95587 * 3 2 1 5 5 N 1.28534 * 110.05432 * 179.76029 * 4 3 2 6 6 C 1.31224 * 109.85717 * 0.45860 * 5 4 3 7 7 N 1.38567 * 126.47094 * 179.81875 * 6 5 4 8 8 C 1.46900 * 111.00227 * 123.63750 * 7 6 5 9 9 C 1.50703 * 109.47455 * 169.99878 * 8 7 6 10 10 H 1.07999 * 119.99885 * 0.02562 * 9 8 7 11 11 C 1.37875 * 120.00307 * 180.02562 * 9 8 7 12 12 N 1.31522 * 119.99681 * 359.97438 * 11 9 8 13 13 Si 1.86794 * 120.00301 * 180.02562 * 11 9 8 14 14 H 1.48507 * 109.46820 * 59.99662 * 13 11 9 15 15 H 1.48495 * 109.47373 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47094 * 300.00067 * 13 11 9 17 17 C 1.46903 * 111.00282 * 359.68753 * 7 6 5 18 18 C 1.53003 * 109.47061 * 293.95588 * 17 7 6 19 19 C 1.53001 * 117.51964 * 116.28123 * 18 17 7 20 20 C 1.52999 * 60.00190 * 107.47982 * 19 18 17 21 21 N 1.36456 * 107.05182 * 359.55676 * 6 5 4 22 22 C 1.46499 * 127.12929 * 180.28774 * 21 6 5 23 23 C 1.50695 * 109.47276 * 90.00128 * 22 21 6 24 24 O 1.21280 * 119.99982 * 359.97438 * 23 22 21 25 25 N 1.34777 * 120.00045 * 179.97438 * 23 22 21 26 26 C 1.46501 * 120.00089 * 179.97438 * 25 23 22 27 27 C 1.46506 * 120.00070 * 359.97438 * 25 23 22 28 28 H 1.09000 * 109.47250 * 59.99502 * 1 2 3 29 29 H 1.09002 * 109.47266 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47113 * 300.00238 * 1 2 3 31 31 H 1.08995 * 109.46994 * 240.00279 * 2 1 3 32 32 H 1.09004 * 109.47202 * 119.99983 * 2 1 3 33 33 H 1.08995 * 109.47424 * 290.00429 * 8 7 6 34 34 H 1.09005 * 109.46605 * 50.00579 * 8 7 6 35 35 H 0.96994 * 119.99642 * 180.02562 * 12 11 9 36 36 H 1.08999 * 109.47623 * 173.95090 * 17 7 6 37 37 H 1.09005 * 109.46959 * 53.95104 * 17 7 6 38 38 H 1.09002 * 115.54973 * 330.57907 * 18 17 7 39 39 H 1.09001 * 117.49733 * 214.97413 * 19 18 17 40 40 H 1.08995 * 117.49577 * 359.97438 * 19 18 17 41 41 H 1.09004 * 117.50150 * 252.51496 * 20 19 18 42 42 H 1.09004 * 117.49681 * 107.48417 * 20 19 18 43 43 H 1.09004 * 109.46320 * 209.99641 * 22 21 6 44 44 H 1.08997 * 109.47488 * 329.99385 * 22 21 6 45 45 H 1.08998 * 109.47052 * 90.00229 * 26 25 23 46 46 H 1.09004 * 109.47022 * 210.00065 * 26 25 23 47 47 H 1.08996 * 109.47412 * 329.99744 * 26 25 23 48 48 H 1.09001 * 109.46676 * 60.00117 * 27 25 23 49 49 H 1.08998 * 109.47034 * 179.97438 * 27 25 23 50 50 H 1.09002 * 109.47076 * 300.00370 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2905 2.1486 -1.0494 5 7 2.6967 3.3135 -0.6888 6 6 2.7289 3.3887 0.6208 7 7 3.1171 4.4854 1.3736 8 6 2.0531 4.8898 2.3023 9 6 2.5907 5.9156 3.2664 10 1 3.6198 6.2356 3.1961 11 6 1.7689 6.4457 4.2383 12 7 0.5156 6.0564 4.3236 13 14 2.4352 7.7178 5.4329 14 1 2.9100 8.9052 4.6777 15 1 1.3597 8.1265 6.3717 16 1 3.5656 7.1337 6.1985 17 6 3.5136 5.6043 0.5082 18 6 4.7789 5.2274 -0.2650 19 6 4.6759 5.1384 -1.7890 20 6 5.4202 6.3067 -1.1396 21 7 2.3025 2.1849 1.1013 22 6 2.1626 1.7927 2.5059 23 6 0.7752 2.1323 2.9865 24 8 -0.0184 2.6512 2.2303 25 7 0.4164 1.8592 4.2566 26 6 -0.9321 2.1898 4.7240 27 6 1.3749 1.2318 5.1699 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.2238 5.3190 1.7401 34 1 1.7040 4.0183 2.8563 35 1 -0.0627 6.4296 5.0071 36 1 3.7103 6.4848 1.1199 37 1 2.7096 5.8225 -0.1948 38 1 5.4445 4.5247 0.2363 39 1 5.2736 4.3770 -2.2902 40 1 3.7064 5.3479 -2.2409 41 1 4.9405 7.2852 -1.1642 42 1 6.5077 6.3140 -1.2135 43 1 2.3277 0.7195 2.6016 44 1 2.8968 2.3283 3.1076 45 1 -1.5956 1.3433 4.5473 46 1 -0.9027 2.4120 5.7907 47 1 -1.3014 3.0602 4.1817 48 1 2.2495 1.8736 5.2755 49 1 0.9086 1.0904 6.1449 50 1 1.6797 0.2652 4.7688 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001513820942.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:15 Heat of formation + Delta-G solvation = 71.825452 kcal Electronic energy + Delta-G solvation = -31708.441250 eV Core-core repulsion = 27773.227947 eV Total energy + Delta-G solvation = -3935.213303 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.96217 -40.86882 -39.36686 -37.18436 -36.60879 -35.92606 -34.88872 -34.25244 -30.56870 -30.23263 -29.15006 -28.39648 -27.38196 -26.49575 -25.02774 -24.07351 -23.10406 -22.40252 -21.87769 -21.04955 -20.30581 -18.93894 -18.33243 -18.10530 -17.25471 -17.07472 -17.00146 -16.72336 -16.20788 -16.01796 -15.76207 -15.38194 -14.97252 -14.86790 -14.59821 -14.47450 -14.38160 -13.79583 -13.64012 -13.56628 -13.49083 -13.34729 -13.18245 -12.91812 -12.83686 -12.73879 -12.67751 -12.35754 -12.27756 -12.20151 -12.13767 -12.03696 -11.81633 -11.60302 -11.34977 -11.09950 -10.85768 -10.72087 -10.59993 -10.47901 -9.66151 -9.03708 -8.22800 -6.37121 0.74415 1.34693 1.40450 1.43076 1.49336 1.50923 1.91869 2.09544 2.36576 2.84831 3.06455 3.11193 3.36194 3.43617 3.58500 3.83989 3.87538 4.01329 4.11065 4.15788 4.26649 4.29254 4.32232 4.39841 4.46107 4.50812 4.53335 4.61249 4.69412 4.74931 4.81308 4.85307 4.91457 4.92578 4.95976 4.98147 5.01856 5.11358 5.13953 5.17193 5.30484 5.34506 5.39351 5.50356 5.55008 5.75725 5.89584 5.94753 6.27510 6.49049 6.73291 7.09880 7.31652 7.87495 8.85623 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.007784 B = 0.006946 C = 0.003984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3596.149008 B = 4030.376703 C = 7026.253062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.026 4.026 3 C 0.180 3.820 4 N -0.325 5.325 5 N -0.344 5.344 6 C 0.367 3.633 7 N -0.450 5.450 8 C 0.219 3.781 9 C -0.537 4.537 10 H 0.070 0.930 11 C 0.018 3.982 12 N -0.913 5.913 13 Si 0.968 3.032 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.261 1.261 17 C 0.117 3.883 18 C -0.149 4.149 19 C -0.147 4.147 20 C -0.162 4.162 21 N -0.469 5.469 22 C 0.093 3.907 23 C 0.499 3.501 24 O -0.566 6.566 25 N -0.611 5.611 26 C 0.096 3.904 27 C 0.066 3.934 28 H 0.038 0.962 29 H 0.100 0.900 30 H 0.032 0.968 31 H 0.116 0.884 32 H 0.111 0.889 33 H -0.059 1.059 34 H 0.046 0.954 35 H 0.264 0.736 36 H 0.086 0.914 37 H 0.017 0.983 38 H 0.096 0.904 39 H 0.092 0.908 40 H 0.075 0.925 41 H 0.094 0.906 42 H 0.115 0.885 43 H 0.169 0.831 44 H 0.125 0.875 45 H 0.071 0.929 46 H 0.089 0.911 47 H 0.033 0.967 48 H 0.058 0.942 49 H 0.103 0.897 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.644 -14.964 2.419 15.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.065 4.065 3 C -0.089 4.089 4 N -0.163 5.163 5 N -0.188 5.188 6 C 0.009 3.991 7 N -0.173 5.173 8 C 0.094 3.906 9 C -0.575 4.575 10 H 0.088 0.912 11 C -0.183 4.183 12 N -0.551 5.551 13 Si 0.792 3.208 14 H -0.199 1.199 15 H -0.210 1.210 16 H -0.185 1.185 17 C -0.010 4.010 18 C -0.168 4.168 19 C -0.184 4.184 20 C -0.199 4.199 21 N -0.164 5.164 22 C -0.033 4.033 23 C 0.286 3.714 24 O -0.445 6.445 25 N -0.345 5.345 26 C -0.047 4.047 27 C -0.075 4.075 28 H 0.057 0.943 29 H 0.119 0.881 30 H 0.052 0.948 31 H 0.134 0.866 32 H 0.129 0.871 33 H -0.041 1.041 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.104 0.896 37 H 0.035 0.965 38 H 0.114 0.886 39 H 0.110 0.890 40 H 0.094 0.906 41 H 0.112 0.888 42 H 0.133 0.867 43 H 0.186 0.814 44 H 0.142 0.858 45 H 0.090 0.910 46 H 0.107 0.893 47 H 0.052 0.948 48 H 0.077 0.923 49 H 0.121 0.879 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.607 -14.365 0.997 15.119 hybrid contribution -1.120 1.204 1.587 2.286 sum 3.487 -13.161 2.584 13.858 Atomic orbital electron populations 1.21685 0.93915 1.03266 1.00915 1.20199 0.96129 0.83778 1.06404 1.25453 1.03072 0.98926 0.81438 1.73759 1.17491 0.99526 1.25485 1.74556 1.24082 1.13198 1.06941 1.23077 0.98028 0.87999 0.89959 1.58984 1.37505 1.04126 1.16672 1.19704 0.85221 0.96789 0.88872 1.21253 0.97971 1.23743 1.14557 0.91236 1.25806 0.94803 0.98575 0.99131 1.70161 1.06398 1.43980 1.34560 0.85467 0.78089 0.78973 0.78282 1.19854 1.20970 1.18500 1.21452 0.95055 0.91561 0.92951 1.21948 0.97989 1.03579 0.93254 1.22677 1.01053 1.00423 0.94225 1.23088 1.00390 0.93868 1.02542 1.45703 1.51593 1.11132 1.07994 1.21949 0.95947 1.06033 0.79364 1.20782 0.89529 0.78229 0.82910 1.90776 1.54312 1.43347 1.56072 1.47686 1.15304 1.60987 1.10513 1.21592 0.82515 1.00276 1.00287 1.22206 0.92395 0.98300 0.94611 0.94304 0.88113 0.94847 0.86558 0.87056 1.04148 0.93637 0.92756 0.89592 0.96457 0.88595 0.88992 0.90629 0.88769 0.86702 0.81393 0.85751 0.91012 0.89280 0.94783 0.92338 0.87877 0.88550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.37 9.89 71.98 0.71 -2.65 16 2 C -0.03 -0.58 6.31 29.85 0.19 -0.40 16 3 C 0.18 6.37 7.32 137.64 1.01 7.38 16 4 N -0.32 -13.84 12.18 -49.54 -0.60 -14.45 16 5 N -0.34 -15.91 9.33 -58.01 -0.54 -16.45 16 6 C 0.37 16.70 6.79 260.11 1.77 18.47 16 7 N -0.45 -21.35 4.56 -710.34 -3.24 -24.59 16 8 C 0.22 11.91 4.28 85.56 0.37 12.28 16 9 C -0.54 -29.47 8.37 25.60 0.21 -29.26 16 10 H 0.07 3.70 7.18 -2.91 -0.02 3.68 16 11 C 0.02 0.95 5.46 84.65 0.46 1.41 16 12 N -0.91 -52.63 13.29 21.45 0.28 -52.34 16 13 Si 0.97 42.17 29.54 68.60 2.03 44.19 16 14 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 15 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 16 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 17 C 0.12 5.23 4.77 86.30 0.41 5.64 16 18 C -0.15 -5.49 4.87 -10.79 -0.05 -5.54 16 19 C -0.15 -4.97 8.88 30.59 0.27 -4.69 16 20 C -0.16 -4.73 10.25 30.60 0.31 -4.42 16 21 N -0.47 -17.88 2.29 -518.92 -1.19 -19.07 16 22 C 0.09 2.84 4.44 85.63 0.38 3.22 16 23 C 0.50 18.11 5.61 87.66 0.49 18.60 16 24 O -0.57 -27.12 14.59 -3.03 -0.04 -27.17 16 25 N -0.61 -17.70 3.27 -871.88 -2.85 -20.56 16 26 C 0.10 2.78 10.41 127.77 1.33 4.11 16 27 C 0.07 1.15 9.74 127.77 1.24 2.39 16 28 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.03 0.99 7.36 -2.38 -0.02 0.97 16 31 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.11 1.68 7.27 -2.39 -0.02 1.66 16 33 H -0.06 -3.92 8.12 -2.39 -0.02 -3.94 16 34 H 0.05 2.44 3.18 -2.38 -0.01 2.43 16 35 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 36 H 0.09 3.94 6.65 -2.39 -0.02 3.92 16 37 H 0.02 0.84 7.64 -2.38 -0.02 0.82 16 38 H 0.10 3.58 8.14 -2.39 -0.02 3.56 16 39 H 0.09 2.91 8.14 -2.39 -0.02 2.89 16 40 H 0.08 2.85 8.03 -2.39 -0.02 2.83 16 41 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 42 H 0.11 2.75 8.14 -2.38 -0.02 2.73 16 43 H 0.17 3.03 6.97 -2.39 -0.02 3.01 16 44 H 0.12 3.92 7.45 -2.39 -0.02 3.91 16 45 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 46 H 0.09 2.13 7.92 -2.38 -0.02 2.11 16 47 H 0.03 1.34 7.42 -2.39 -0.02 1.32 16 48 H 0.06 1.14 7.85 -2.39 -0.02 1.12 16 49 H 0.10 1.31 7.79 -2.39 -0.02 1.29 16 50 H 0.10 0.96 7.85 -2.39 -0.02 0.94 16 Total: -1.00 -82.18 399.91 3.88 -78.31 By element: Atomic # 1 Polarization: 24.65 SS G_CDS: 0.93 Total: 25.58 kcal Atomic # 6 Polarization: 17.43 SS G_CDS: 9.11 Total: 26.54 kcal Atomic # 7 Polarization: -139.31 SS G_CDS: -8.14 Total: -147.45 kcal Atomic # 8 Polarization: -27.12 SS G_CDS: -0.04 Total: -27.17 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.19 kcal Total: -82.18 3.88 -78.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001513820942.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.132 kcal (2) G-P(sol) polarization free energy of solvation -82.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds