Wall clock time and date at job start Tue Mar 31 2020 18:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30828 * 125.96259 * 2 1 4 4 C 1.33236 * 109.82867 * 180.02562 * 3 2 1 5 5 C 1.50703 * 125.52827 * 180.02562 * 4 3 2 6 6 C 1.50696 * 109.47100 * 89.99682 * 5 4 3 7 7 O 1.21286 * 120.00151 * 0.02562 * 6 5 4 8 8 N 1.34774 * 120.00026 * 180.02562 * 6 5 4 9 9 C 1.46925 * 120.63291 * 5.14829 * 8 6 5 10 10 C 1.53185 * 108.77659 * 126.36884 * 9 8 6 11 11 C 1.53044 * 109.31354 * 54.64214 * 10 9 8 12 12 C 1.53044 * 109.53348 * 298.63195 * 11 10 9 13 13 H 1.09000 * 109.49479 * 181.31470 * 12 11 10 14 14 C 1.53001 * 109.49840 * 301.41332 * 12 11 10 15 15 C 1.46932 * 120.63154 * 185.12743 * 8 6 5 16 16 H 1.09007 * 109.58167 * 113.84407 * 15 8 6 17 17 C 1.52996 * 109.58622 * 353.41764 * 15 8 6 18 18 C 1.53001 * 109.47130 * 179.06556 * 17 15 8 19 19 N 1.46503 * 109.46932 * 185.27528 * 18 17 15 20 20 C 1.36939 * 119.99434 * 179.97438 * 19 18 17 21 21 H 1.07994 * 120.00623 * 0.02562 * 20 19 18 22 22 C 1.38818 * 119.99652 * 179.97438 * 20 19 18 23 23 N 1.31621 * 120.00068 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00068 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46961 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.46802 * 120.00259 * 24 22 20 27 27 H 1.48493 * 109.47350 * 240.00351 * 24 22 20 28 28 N 1.30710 * 108.94912 * 0.26449 * 4 3 2 29 29 N 1.34431 * 125.95864 * 180.02562 * 2 1 3 30 30 H 0.97002 * 126.82399 * 359.97153 * 29 2 1 31 31 H 1.08999 * 109.47415 * 89.97585 * 1 2 3 32 32 H 1.08999 * 109.47097 * 209.97644 * 1 2 3 33 33 H 1.08995 * 109.47046 * 329.97440 * 1 2 3 34 34 H 1.09006 * 109.46631 * 330.00263 * 5 4 3 35 35 H 1.08996 * 109.47072 * 210.00220 * 5 4 3 36 36 H 1.08998 * 109.58545 * 246.16068 * 9 8 6 37 37 H 1.09004 * 109.58384 * 6.58244 * 9 8 6 38 38 H 1.08998 * 109.49842 * 174.58720 * 10 9 8 39 39 H 1.08997 * 109.50209 * 294.65634 * 10 9 8 40 40 H 1.08997 * 109.46298 * 58.65043 * 11 10 9 41 41 H 1.08998 * 109.46171 * 178.61368 * 11 10 9 42 42 H 1.09003 * 109.47011 * 179.83930 * 14 12 11 43 43 H 1.09000 * 109.47197 * 299.83817 * 14 12 11 44 44 H 1.08995 * 109.47222 * 59.84025 * 14 12 11 45 45 H 1.09000 * 109.47334 * 299.06740 * 17 15 8 46 46 H 1.09003 * 109.47081 * 59.06571 * 17 15 8 47 47 H 1.08998 * 109.47216 * 305.27251 * 18 17 15 48 48 H 1.08994 * 109.47201 * 65.27719 * 18 17 15 49 49 H 0.97001 * 120.00217 * 0.02562 * 19 18 17 50 50 H 0.96993 * 120.00306 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0589 0.0000 4 6 3.5552 0.6887 -0.0006 5 6 4.7373 1.6235 -0.0002 6 6 5.1316 1.9341 1.4207 7 8 4.5139 1.4443 2.3424 8 7 6.1706 2.7563 1.6673 9 6 6.8574 3.4457 0.5665 10 6 6.8836 4.9479 0.8655 11 6 7.5124 5.1793 2.2415 12 6 6.6665 4.4881 3.3134 13 1 7.1019 4.6728 4.2954 14 6 5.2406 5.0412 3.2740 15 6 6.6378 2.9807 3.0422 16 1 7.6405 2.5692 3.1590 17 6 5.6833 2.3006 4.0256 18 6 6.1850 2.5161 5.4549 19 7 5.3436 1.7610 6.3868 20 6 5.6040 1.8010 7.7306 21 1 6.4292 2.3894 8.1035 22 6 4.8065 1.0860 8.6136 23 7 3.8004 0.3693 8.1592 24 14 5.1620 1.1399 10.4467 25 1 6.3385 2.0108 10.6973 26 1 3.9815 1.6850 11.1639 27 1 5.4483 -0.2325 10.9360 28 7 3.6194 -0.6168 -0.0066 29 7 2.2964 -1.0881 -0.0005 30 1 2.0093 -2.0147 -0.0005 31 1 -0.3634 0.0004 -1.0276 32 1 -0.3633 -0.8902 0.5135 33 1 -0.3633 0.8897 0.5142 34 1 4.4700 2.5473 -0.5133 35 1 5.5741 1.1512 -0.5146 36 1 7.8779 3.0722 0.4816 37 1 6.3222 3.2680 -0.3663 38 1 7.4735 5.4599 0.1053 39 1 5.8657 5.3378 0.8599 40 1 8.5214 4.7672 2.2536 41 1 7.5547 6.2490 2.4462 42 1 4.6378 4.5466 4.0357 43 1 5.2614 6.1138 3.4670 44 1 4.8065 4.8573 2.2912 45 1 4.6872 2.7306 3.9215 46 1 5.6421 1.2325 3.8122 47 1 7.2156 2.1704 5.5343 48 1 6.1376 3.5769 5.7006 49 1 4.6026 1.2322 6.0518 50 1 3.2434 -0.1306 8.7761 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001565935811.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:25 Heat of formation + Delta-G solvation = 70.072070 kcal Electronic energy + Delta-G solvation = -30159.834074 eV Core-core repulsion = 26224.544738 eV Total energy + Delta-G solvation = -3935.289335 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.22774 -40.66349 -37.73599 -35.26230 -33.90120 -33.43917 -32.68888 -32.44048 -30.75221 -30.11733 -28.30451 -27.70746 -26.62169 -24.90220 -23.71471 -22.54540 -21.70758 -20.95827 -20.69444 -19.68599 -18.33595 -17.95805 -17.18543 -16.55736 -16.06294 -15.57701 -15.46224 -15.14303 -14.85072 -14.44381 -14.22061 -13.95574 -13.71194 -13.53249 -13.37442 -13.16564 -12.99901 -12.93869 -12.88430 -12.73408 -12.35525 -12.19625 -11.91270 -11.75418 -11.51095 -11.19940 -11.04222 -10.95855 -10.79123 -10.73961 -10.45763 -10.31221 -10.17316 -10.08585 -10.04008 -9.87359 -9.56074 -9.54707 -8.72976 -8.67066 -8.35865 -6.73801 -5.61348 -2.89014 1.50789 2.51166 2.65234 2.76887 3.16268 3.51392 3.55975 3.58948 3.82634 4.38358 4.48873 4.61782 4.66268 4.72384 4.78566 4.87480 5.00456 5.03225 5.13163 5.15688 5.20208 5.25670 5.40468 5.47808 5.55909 5.61617 5.66261 5.70957 5.73401 5.80566 5.85027 5.91546 6.11378 6.14990 6.16099 6.20565 6.31636 6.35280 6.41192 6.50150 6.58699 6.67706 6.78646 6.94977 7.17919 7.31564 7.52654 7.82598 8.01929 8.37093 8.57736 9.68118 10.31359 10.66075 11.61836 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.008229 B = 0.003772 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3401.945233 B = 7420.761103 C =10167.424633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.284 3.716 3 N -0.530 5.530 4 C 0.251 3.749 5 C -0.049 4.049 6 C 0.517 3.483 7 O -0.501 6.501 8 N -0.608 5.608 9 C 0.107 3.893 10 C -0.138 4.138 11 C -0.115 4.115 12 C -0.105 4.105 13 H 0.086 0.914 14 C -0.146 4.146 15 C 0.159 3.841 16 H 0.070 0.930 17 C -0.115 4.115 18 C 0.148 3.852 19 N -0.731 5.731 20 C -0.233 4.233 21 H 0.069 0.931 22 C -0.018 4.018 23 N -0.933 5.933 24 Si 0.905 3.095 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.293 1.293 28 N -0.304 5.304 29 N -0.481 5.481 30 H 0.440 0.560 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.117 0.883 35 H 0.113 0.887 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.066 0.934 43 H 0.048 0.952 44 H 0.053 0.947 45 H 0.078 0.922 46 H 0.083 0.917 47 H 0.010 0.990 48 H 0.016 0.984 49 H 0.385 0.615 50 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.685 5.432 -25.665 26.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.006 3.994 3 N -0.260 5.260 4 C -0.033 4.033 5 C -0.092 4.092 6 C 0.302 3.698 7 O -0.375 6.375 8 N -0.343 5.343 9 C -0.017 4.017 10 C -0.176 4.176 11 C -0.152 4.152 12 C -0.124 4.124 13 H 0.104 0.896 14 C -0.203 4.203 15 C 0.056 3.944 16 H 0.088 0.912 17 C -0.152 4.152 18 C 0.020 3.980 19 N -0.375 5.375 20 C -0.365 4.365 21 H 0.087 0.913 22 C -0.213 4.213 23 N -0.582 5.582 24 Si 0.736 3.264 25 H -0.206 1.206 26 H -0.220 1.220 27 H -0.220 1.220 28 N -0.133 5.133 29 N -0.199 5.199 30 H 0.285 0.715 31 H 0.108 0.892 32 H 0.102 0.898 33 H 0.118 0.882 34 H 0.135 0.865 35 H 0.131 0.869 36 H 0.087 0.913 37 H 0.100 0.900 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.067 0.933 44 H 0.072 0.928 45 H 0.096 0.904 46 H 0.102 0.898 47 H 0.028 0.972 48 H 0.033 0.967 49 H 0.219 0.781 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.006 5.182 -25.016 25.567 hybrid contribution -0.313 -0.797 0.946 1.276 sum 0.694 4.386 -24.070 24.476 Atomic orbital electron populations 1.20392 0.83679 1.05338 1.04237 1.24339 0.96591 0.82763 0.95709 1.70275 1.01219 1.29554 1.24937 1.23221 0.92616 0.89725 0.97703 1.19986 0.93621 0.98429 0.97138 1.20119 0.80195 0.79191 0.90296 1.90910 1.51362 1.50991 1.44263 1.48048 1.32689 1.45788 1.07753 1.21745 0.97798 0.92571 0.89548 1.21963 1.02269 0.95522 0.97809 1.21559 0.98791 1.00573 0.94293 1.21566 0.96897 0.94524 0.99406 0.89551 1.21870 0.96120 0.99962 1.02312 1.21334 0.98158 0.94824 0.80086 0.91207 1.22286 0.98394 1.02023 0.92536 1.20804 0.93698 0.94592 0.88941 1.42373 1.35500 1.56785 1.02812 1.19302 1.10504 1.23360 0.83321 0.91294 1.24740 0.98270 1.00448 0.97856 1.69700 1.20214 1.35054 1.33271 0.86136 0.77240 0.77091 0.85905 1.20613 1.21978 1.21993 1.77959 0.96789 1.12187 1.26333 1.47908 1.04222 1.10021 1.57754 0.71512 0.89150 0.89783 0.88222 0.86478 0.86883 0.91269 0.89973 0.91018 0.90923 0.91918 0.91781 0.91461 0.93291 0.92833 0.90368 0.89818 0.97214 0.96674 0.78141 0.93747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.51 10.51 36.01 0.38 -0.14 16 2 C 0.28 3.32 8.24 -155.69 -1.28 2.04 16 3 N -0.53 -7.76 11.19 -8.16 -0.09 -7.86 16 4 C 0.25 3.67 6.63 -156.86 -1.04 2.63 16 5 C -0.05 -0.57 4.73 -29.04 -0.14 -0.70 16 6 C 0.52 7.66 7.60 -10.99 -0.08 7.58 16 7 O -0.50 -10.02 11.44 5.55 0.06 -9.95 16 8 N -0.61 -7.56 2.41 -165.22 -0.40 -7.96 16 9 C 0.11 0.86 6.33 -3.71 -0.02 0.84 16 10 C -0.14 -1.06 5.74 -26.61 -0.15 -1.22 16 11 C -0.11 -1.07 5.43 -26.69 -0.14 -1.21 16 12 C -0.10 -1.33 2.33 -90.50 -0.21 -1.54 16 13 H 0.09 1.18 6.91 -51.93 -0.36 0.82 16 14 C -0.15 -1.98 8.20 37.16 0.30 -1.68 16 15 C 0.16 2.31 2.70 -67.60 -0.18 2.13 16 16 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 17 C -0.11 -2.25 2.79 -26.73 -0.07 -2.33 16 18 C 0.15 3.33 5.80 -4.04 -0.02 3.30 16 19 N -0.73 -20.71 5.60 -59.91 -0.34 -21.05 16 20 C -0.23 -7.06 9.99 -15.06 -0.15 -7.21 16 21 H 0.07 2.01 7.83 -52.49 -0.41 1.60 16 22 C -0.02 -0.54 5.50 -17.43 -0.10 -0.64 16 23 N -0.93 -30.33 13.06 55.49 0.72 -29.60 16 24 Si 0.90 23.63 29.55 -169.99 -5.02 18.61 16 25 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 26 H -0.29 -7.63 7.11 56.52 0.40 -7.22 16 27 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 28 N -0.30 -4.53 12.80 32.42 0.41 -4.11 16 29 N -0.48 -5.56 7.45 32.62 0.24 -5.32 16 30 H 0.44 3.39 8.96 -182.33 -1.63 1.75 16 31 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.12 1.04 7.48 -51.93 -0.39 0.65 16 35 H 0.11 1.00 8.11 -51.93 -0.42 0.58 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.08 0.48 5.96 -51.93 -0.31 0.17 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.62 6.33 -51.93 -0.33 0.29 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.07 1.13 6.32 -51.93 -0.33 0.80 16 43 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.05 0.71 5.97 -51.93 -0.31 0.40 16 45 H 0.08 1.68 5.23 -51.93 -0.27 1.41 16 46 H 0.08 1.89 6.36 -51.93 -0.33 1.56 16 47 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 48 H 0.02 0.34 6.90 -51.93 -0.36 -0.02 16 49 H 0.38 11.76 7.67 -40.82 -0.31 11.45 16 50 H 0.25 7.86 8.31 -40.82 -0.34 7.52 16 LS Contribution 387.11 15.07 5.83 5.83 Total: -1.00 -39.98 387.11 -10.62 -50.60 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: -9.13 Total: 8.95 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: -2.92 Total: 1.86 kcal Atomic # 7 Polarization: -76.46 SS G_CDS: 0.56 Total: -75.90 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.06 Total: -9.95 kcal Atomic # 14 Polarization: 23.63 SS G_CDS: -5.02 Total: 18.61 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -39.98 -10.62 -50.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565935811.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.669 kcal (2) G-P(sol) polarization free energy of solvation -39.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds