Wall clock time and date at job start Tue Mar 31 2020 18:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30828 * 125.96259 * 2 1 4 4 C 1.33236 * 109.82867 * 180.02562 * 3 2 1 5 5 C 1.50703 * 125.52827 * 180.02562 * 4 3 2 6 6 C 1.50696 * 109.47100 * 89.99682 * 5 4 3 7 7 O 1.21286 * 120.00151 * 0.02562 * 6 5 4 8 8 N 1.34774 * 120.00026 * 180.02562 * 6 5 4 9 9 C 1.46925 * 120.63291 * 5.14829 * 8 6 5 10 10 C 1.53185 * 108.77659 * 126.36884 * 9 8 6 11 11 C 1.53044 * 109.31354 * 54.64214 * 10 9 8 12 12 C 1.53044 * 109.53348 * 298.63195 * 11 10 9 13 13 H 1.09000 * 109.49479 * 181.31470 * 12 11 10 14 14 C 1.53001 * 109.49840 * 301.41332 * 12 11 10 15 15 C 1.46932 * 120.63154 * 185.12743 * 8 6 5 16 16 H 1.09007 * 109.58167 * 113.84407 * 15 8 6 17 17 C 1.52996 * 109.58622 * 353.41764 * 15 8 6 18 18 C 1.53001 * 109.47130 * 179.06556 * 17 15 8 19 19 N 1.46503 * 109.46932 * 185.27528 * 18 17 15 20 20 C 1.36939 * 119.99434 * 179.97438 * 19 18 17 21 21 H 1.07994 * 120.00623 * 0.02562 * 20 19 18 22 22 C 1.38818 * 119.99652 * 179.97438 * 20 19 18 23 23 N 1.31621 * 120.00068 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00068 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46961 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.46802 * 120.00259 * 24 22 20 27 27 H 1.48493 * 109.47350 * 240.00351 * 24 22 20 28 28 N 1.30710 * 108.94912 * 0.26449 * 4 3 2 29 29 N 1.34431 * 125.95864 * 180.02562 * 2 1 3 30 30 H 0.97002 * 126.82399 * 359.97153 * 29 2 1 31 31 H 1.08999 * 109.47415 * 89.97585 * 1 2 3 32 32 H 1.08999 * 109.47097 * 209.97644 * 1 2 3 33 33 H 1.08995 * 109.47046 * 329.97440 * 1 2 3 34 34 H 1.09006 * 109.46631 * 330.00263 * 5 4 3 35 35 H 1.08996 * 109.47072 * 210.00220 * 5 4 3 36 36 H 1.08998 * 109.58545 * 246.16068 * 9 8 6 37 37 H 1.09004 * 109.58384 * 6.58244 * 9 8 6 38 38 H 1.08998 * 109.49842 * 174.58720 * 10 9 8 39 39 H 1.08997 * 109.50209 * 294.65634 * 10 9 8 40 40 H 1.08997 * 109.46298 * 58.65043 * 11 10 9 41 41 H 1.08998 * 109.46171 * 178.61368 * 11 10 9 42 42 H 1.09003 * 109.47011 * 179.83930 * 14 12 11 43 43 H 1.09000 * 109.47197 * 299.83817 * 14 12 11 44 44 H 1.08995 * 109.47222 * 59.84025 * 14 12 11 45 45 H 1.09000 * 109.47334 * 299.06740 * 17 15 8 46 46 H 1.09003 * 109.47081 * 59.06571 * 17 15 8 47 47 H 1.08998 * 109.47216 * 305.27251 * 18 17 15 48 48 H 1.08994 * 109.47201 * 65.27719 * 18 17 15 49 49 H 0.97001 * 120.00217 * 0.02562 * 19 18 17 50 50 H 0.96993 * 120.00306 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0589 0.0000 4 6 3.5552 0.6887 -0.0006 5 6 4.7373 1.6235 -0.0002 6 6 5.1316 1.9341 1.4207 7 8 4.5139 1.4443 2.3424 8 7 6.1706 2.7563 1.6673 9 6 6.8574 3.4457 0.5665 10 6 6.8836 4.9479 0.8655 11 6 7.5124 5.1793 2.2415 12 6 6.6665 4.4881 3.3134 13 1 7.1019 4.6728 4.2954 14 6 5.2406 5.0412 3.2740 15 6 6.6378 2.9807 3.0422 16 1 7.6405 2.5692 3.1590 17 6 5.6833 2.3006 4.0256 18 6 6.1850 2.5161 5.4549 19 7 5.3436 1.7610 6.3868 20 6 5.6040 1.8010 7.7306 21 1 6.4292 2.3894 8.1035 22 6 4.8065 1.0860 8.6136 23 7 3.8004 0.3693 8.1592 24 14 5.1620 1.1399 10.4467 25 1 6.3385 2.0108 10.6973 26 1 3.9815 1.6850 11.1639 27 1 5.4483 -0.2325 10.9360 28 7 3.6194 -0.6168 -0.0066 29 7 2.2964 -1.0881 -0.0005 30 1 2.0093 -2.0147 -0.0005 31 1 -0.3634 0.0004 -1.0276 32 1 -0.3633 -0.8902 0.5135 33 1 -0.3633 0.8897 0.5142 34 1 4.4700 2.5473 -0.5133 35 1 5.5741 1.1512 -0.5146 36 1 7.8779 3.0722 0.4816 37 1 6.3222 3.2680 -0.3663 38 1 7.4735 5.4599 0.1053 39 1 5.8657 5.3378 0.8599 40 1 8.5214 4.7672 2.2536 41 1 7.5547 6.2490 2.4462 42 1 4.6378 4.5466 4.0357 43 1 5.2614 6.1138 3.4670 44 1 4.8065 4.8573 2.2912 45 1 4.6872 2.7306 3.9215 46 1 5.6421 1.2325 3.8122 47 1 7.2156 2.1704 5.5343 48 1 6.1376 3.5769 5.7006 49 1 4.6026 1.2322 6.0518 50 1 3.2434 -0.1306 8.7761 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001565935811.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:24 Heat of formation + Delta-G solvation = 41.267572 kcal Electronic energy + Delta-G solvation = -30161.083131 eV Core-core repulsion = 26224.544738 eV Total energy + Delta-G solvation = -3936.538392 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.17828 -41.75611 -38.84325 -37.02179 -35.22192 -34.42654 -34.11346 -33.35933 -32.56398 -31.01692 -29.74086 -28.68688 -27.68184 -26.34977 -25.15770 -24.02800 -22.79261 -22.09367 -21.92496 -20.72458 -19.37900 -19.18959 -18.88401 -17.81464 -17.20780 -16.81599 -16.51235 -16.43622 -16.15677 -15.75303 -15.32724 -15.20794 -15.01068 -14.88104 -14.65949 -14.40708 -14.18143 -14.04014 -13.65328 -13.62761 -13.51128 -13.18860 -13.10750 -12.94310 -12.87347 -12.76522 -12.50382 -12.36524 -12.29420 -12.08898 -11.86832 -11.74624 -11.67592 -11.28386 -11.21737 -11.16237 -11.08650 -10.93440 -10.54202 -9.97942 -9.44438 -9.04225 -7.97452 -5.28510 0.56379 1.42243 1.45659 1.55904 1.61576 1.67458 1.73715 2.18717 2.53374 3.00345 3.34936 3.49833 3.53617 3.81673 3.82354 3.92271 3.97338 4.08214 4.17477 4.27289 4.35194 4.37131 4.42436 4.49513 4.60373 4.64421 4.68020 4.71749 4.74155 4.78655 4.83701 4.86579 4.95425 5.02594 5.03025 5.16392 5.23053 5.24917 5.28973 5.34297 5.38244 5.41412 5.44531 5.54058 5.60734 5.78852 6.18717 6.23556 6.49874 7.06074 7.27076 7.28549 8.04519 8.29506 9.27314 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.008229 B = 0.003772 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3401.945233 B = 7420.761103 C =10167.424633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.283 3.717 3 N -0.567 5.567 4 C 0.236 3.764 5 C -0.042 4.042 6 C 0.509 3.491 7 O -0.566 6.566 8 N -0.601 5.601 9 C 0.097 3.903 10 C -0.133 4.133 11 C -0.109 4.109 12 C -0.102 4.102 13 H 0.074 0.926 14 C -0.139 4.139 15 C 0.163 3.837 16 H 0.079 0.921 17 C -0.089 4.089 18 C 0.149 3.851 19 N -0.749 5.749 20 C -0.247 4.247 21 H 0.079 0.921 22 C -0.082 4.082 23 N -0.976 5.976 24 Si 0.982 3.018 25 H -0.261 1.261 26 H -0.290 1.290 27 H -0.291 1.291 28 N -0.340 5.340 29 N -0.477 5.477 30 H 0.453 0.547 31 H 0.119 0.881 32 H 0.105 0.895 33 H 0.093 0.907 34 H 0.147 0.853 35 H 0.143 0.857 36 H 0.090 0.910 37 H 0.111 0.889 38 H 0.106 0.894 39 H 0.064 0.936 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.024 0.976 43 H 0.065 0.935 44 H 0.057 0.943 45 H 0.052 0.948 46 H 0.048 0.952 47 H 0.015 0.985 48 H 0.023 0.977 49 H 0.367 0.633 50 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.257 7.067 -27.479 28.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.005 3.995 3 N -0.297 5.297 4 C -0.048 4.048 5 C -0.083 4.083 6 C 0.296 3.704 7 O -0.445 6.445 8 N -0.334 5.334 9 C -0.024 4.024 10 C -0.171 4.171 11 C -0.146 4.146 12 C -0.121 4.121 13 H 0.092 0.908 14 C -0.196 4.196 15 C 0.059 3.941 16 H 0.096 0.904 17 C -0.127 4.127 18 C 0.022 3.978 19 N -0.390 5.390 20 C -0.379 4.379 21 H 0.097 0.903 22 C -0.274 4.274 23 N -0.627 5.627 24 Si 0.810 3.190 25 H -0.185 1.185 26 H -0.217 1.217 27 H -0.218 1.218 28 N -0.170 5.170 29 N -0.197 5.197 30 H 0.302 0.698 31 H 0.137 0.863 32 H 0.124 0.876 33 H 0.112 0.888 34 H 0.165 0.835 35 H 0.161 0.839 36 H 0.108 0.892 37 H 0.129 0.871 38 H 0.124 0.876 39 H 0.083 0.917 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.043 0.957 43 H 0.084 0.916 44 H 0.076 0.924 45 H 0.071 0.929 46 H 0.067 0.933 47 H 0.033 0.967 48 H 0.041 0.959 49 H 0.198 0.802 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 2.638 6.855 -26.884 27.869 hybrid contribution -0.838 -1.305 1.462 2.131 sum 1.800 5.551 -25.422 26.083 Atomic orbital electron populations 1.20629 0.80315 1.06094 1.06288 1.25220 0.98303 0.82156 0.93777 1.70280 1.01725 1.31122 1.26596 1.23785 0.93557 0.90097 0.97324 1.20108 0.93744 0.99525 0.94955 1.20765 0.79874 0.78567 0.91145 1.90895 1.53685 1.53493 1.46424 1.48125 1.32102 1.45259 1.07935 1.22190 0.98832 0.92505 0.88834 1.21974 1.02288 0.95238 0.97613 1.21542 0.98573 1.00804 0.93726 1.21532 0.96857 0.93182 1.00516 0.90781 1.21794 0.96241 1.00531 1.01037 1.21139 0.96722 0.95792 0.80417 0.90356 1.21918 0.98417 1.00160 0.92217 1.20971 0.92959 0.94025 0.89811 1.42661 1.35757 1.57245 1.03381 1.19764 1.10604 1.23136 0.84350 0.90308 1.25736 0.98167 1.00290 1.03177 1.69897 1.21528 1.36237 1.35021 0.84944 0.77586 0.77226 0.79226 1.18547 1.21740 1.21790 1.77838 0.98744 1.12749 1.27677 1.47864 1.03413 1.10950 1.57472 0.69845 0.86281 0.87598 0.88791 0.83529 0.83941 0.89206 0.87077 0.87615 0.91738 0.90627 0.90568 0.95732 0.91604 0.92423 0.92944 0.93338 0.96666 0.95880 0.80184 0.94021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.91 10.51 71.24 0.75 -0.16 16 2 C 0.28 6.63 8.24 138.23 1.14 7.77 16 3 N -0.57 -16.86 11.19 -179.73 -2.01 -18.87 16 4 C 0.24 6.98 6.63 138.63 0.92 7.90 16 5 C -0.04 -0.91 4.73 29.10 0.14 -0.77 16 6 C 0.51 15.29 7.60 87.66 0.67 15.96 16 7 O -0.57 -24.23 11.44 -3.05 -0.03 -24.26 16 8 N -0.60 -14.31 2.41 -795.03 -1.92 -16.23 16 9 C 0.10 1.20 6.33 86.36 0.55 1.75 16 10 C -0.13 -1.50 5.74 30.67 0.18 -1.32 16 11 C -0.11 -1.66 5.43 30.62 0.17 -1.49 16 12 C -0.10 -2.48 2.33 -10.72 -0.02 -2.51 16 13 H 0.07 1.98 6.91 -2.39 -0.02 1.97 16 14 C -0.14 -3.80 8.20 71.98 0.59 -3.21 16 15 C 0.16 4.75 2.70 44.97 0.12 4.87 16 16 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16 17 C -0.09 -3.73 2.79 30.59 0.09 -3.64 16 18 C 0.15 7.02 5.80 86.38 0.50 7.52 16 19 N -0.75 -44.55 5.60 -343.45 -1.92 -46.47 16 20 C -0.25 -15.29 9.99 84.03 0.84 -14.45 16 21 H 0.08 4.61 7.83 -2.91 -0.02 4.59 16 22 C -0.08 -5.15 5.50 84.86 0.47 -4.68 16 23 N -0.98 -65.64 13.06 21.65 0.28 -65.36 16 24 Si 0.98 49.31 29.55 68.60 2.03 51.34 16 25 H -0.26 -12.16 7.11 99.48 0.71 -11.45 16 26 H -0.29 -14.40 7.11 99.48 0.71 -13.69 16 27 H -0.29 -14.44 7.11 99.48 0.71 -13.73 16 28 N -0.34 -10.39 12.80 -51.34 -0.66 -11.04 16 29 N -0.48 -11.21 7.45 -50.71 -0.38 -11.59 16 30 H 0.45 7.06 8.96 -213.09 -1.91 5.15 16 31 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.15 2.24 7.48 -2.38 -0.02 2.22 16 35 H 0.14 2.19 8.11 -2.39 -0.02 2.17 16 36 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.11 0.78 5.96 -2.39 -0.01 0.76 16 38 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.06 0.87 6.33 -2.39 -0.02 0.86 16 40 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.02 0.86 6.32 -2.39 -0.02 0.85 16 43 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.06 1.51 5.97 -2.39 -0.01 1.49 16 45 H 0.05 2.46 5.23 -2.39 -0.01 2.44 16 46 H 0.05 2.37 6.36 -2.39 -0.02 2.36 16 47 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 48 H 0.02 1.06 6.90 -2.39 -0.02 1.04 16 49 H 0.37 24.00 7.67 -92.71 -0.71 23.29 16 50 H 0.25 16.12 8.31 -92.71 -0.77 15.35 16 Total: -1.00 -93.51 387.11 0.82 -92.69 By element: Atomic # 1 Polarization: 37.93 SS G_CDS: -1.64 Total: 36.28 kcal Atomic # 6 Polarization: 6.43 SS G_CDS: 7.08 Total: 13.51 kcal Atomic # 7 Polarization: -162.95 SS G_CDS: -6.60 Total: -169.56 kcal Atomic # 8 Polarization: -24.23 SS G_CDS: -0.03 Total: -24.26 kcal Atomic # 14 Polarization: 49.31 SS G_CDS: 2.03 Total: 51.34 kcal Total: -93.51 0.82 -92.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565935811.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.953 kcal (2) G-P(sol) polarization free energy of solvation -93.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds