Wall clock time and date at job start Tue Mar 31 2020 18:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30832 * 125.96318 * 2 1 4 4 C 1.33233 * 109.83053 * 180.02562 * 3 2 1 5 5 C 1.50702 * 125.52644 * 179.97438 * 4 3 2 6 6 C 1.50704 * 109.46822 * 90.00377 * 5 4 3 7 7 O 1.21287 * 119.99913 * 0.02562 * 6 5 4 8 8 N 1.34776 * 120.00155 * 179.97438 * 6 5 4 9 9 C 1.46926 * 120.62917 * 353.95644 * 8 6 5 10 10 C 1.53621 * 108.54410 * 126.37038 * 9 8 6 11 11 C 1.53044 * 109.24281 * 54.85271 * 10 9 8 12 12 C 1.53039 * 109.53965 * 298.51506 * 11 10 9 13 13 H 1.09001 * 109.52649 * 301.39679 * 12 11 10 14 14 C 1.52998 * 109.49878 * 181.31242 * 12 11 10 15 15 C 1.46926 * 120.63011 * 174.24013 * 8 6 5 16 16 H 1.08996 * 109.58544 * 113.65897 * 15 8 6 17 17 C 1.52994 * 109.58620 * 353.36849 * 15 8 6 18 18 C 1.52994 * 109.47398 * 295.33131 * 17 15 8 19 19 N 1.46503 * 109.47164 * 173.21902 * 18 17 15 20 20 C 1.36937 * 120.00389 * 179.97438 * 19 18 17 21 21 H 1.07996 * 119.99494 * 0.02562 * 20 19 18 22 22 C 1.38809 * 120.00600 * 180.02562 * 20 19 18 23 23 N 1.31626 * 119.99403 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00458 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46946 * 0.02562 * 24 22 20 26 26 H 1.48496 * 109.46900 * 119.99764 * 24 22 20 27 27 H 1.48496 * 109.47306 * 240.00380 * 24 22 20 28 28 N 1.30716 * 108.94818 * 0.02562 * 4 3 2 29 29 N 1.34427 * 125.95819 * 180.02562 * 2 1 3 30 30 H 0.96994 * 126.82930 * 359.97438 * 29 2 1 31 31 H 1.09003 * 109.46901 * 89.97678 * 1 2 3 32 32 H 1.08998 * 109.47363 * 209.98228 * 1 2 3 33 33 H 1.09000 * 109.47007 * 329.98286 * 1 2 3 34 34 H 1.09005 * 109.47187 * 210.00080 * 5 4 3 35 35 H 1.08992 * 109.47535 * 330.00467 * 5 4 3 36 36 H 1.09003 * 109.58849 * 246.20647 * 9 8 6 37 37 H 1.09009 * 109.58667 * 6.62747 * 9 8 6 38 38 H 1.09005 * 109.62945 * 294.86778 * 10 9 8 39 39 H 1.08994 * 109.43559 * 174.72743 * 10 9 8 40 40 H 1.08994 * 109.46093 * 178.49170 * 11 10 9 41 41 H 1.09001 * 109.45240 * 58.53375 * 11 10 9 42 42 H 1.09004 * 109.47075 * 300.16496 * 14 12 11 43 43 H 1.09003 * 109.46842 * 60.15987 * 14 12 11 44 44 H 1.08992 * 109.47156 * 180.15986 * 14 12 11 45 45 H 1.09000 * 109.47089 * 55.33843 * 17 15 8 46 46 H 1.09003 * 109.47089 * 175.32708 * 17 15 8 47 47 H 1.09002 * 109.47454 * 293.22164 * 18 17 15 48 48 H 1.09005 * 109.47237 * 53.22621 * 18 17 15 49 49 H 0.97000 * 120.00206 * 0.02562 * 19 18 17 50 50 H 0.97003 * 119.99620 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0589 0.0000 4 6 3.5552 0.6887 -0.0006 5 6 4.7372 1.6236 -0.0013 6 6 5.1319 1.9354 1.4193 7 8 4.5145 1.4461 2.3416 8 7 6.1716 2.7570 1.6651 9 6 7.0114 3.2510 0.5654 10 6 7.0673 4.7842 0.6442 11 6 7.5467 5.2006 2.0367 12 6 6.5556 4.7003 3.0900 13 1 5.5678 5.1135 2.8861 14 6 7.0185 5.1451 4.4788 15 6 6.4906 3.1706 3.0384 16 1 7.4531 2.7517 3.3319 17 6 5.4020 2.6711 3.9903 18 6 4.0760 3.3557 3.6530 19 7 3.0023 2.7618 4.4534 20 6 1.7177 3.2173 4.3215 21 1 1.4960 4.0142 3.6271 22 6 0.7004 2.6551 5.0803 23 7 0.9707 1.6842 5.9270 24 14 -1.0518 3.2770 4.9009 25 1 -1.0897 4.3655 3.8914 26 1 -1.9296 2.1632 4.4603 27 1 -1.5290 3.7963 6.2076 28 7 3.6194 -0.6168 -0.0015 29 7 2.2964 -1.0881 -0.0005 30 1 2.0093 -2.0146 -0.0006 31 1 -0.3633 0.0004 -1.0277 32 1 -0.3634 -0.8901 0.5135 33 1 -0.3633 0.8898 0.5141 34 1 5.5741 1.1509 -0.5155 35 1 4.4699 2.5469 -0.5150 36 1 8.0168 2.8406 0.6605 37 1 6.5797 2.9482 -0.3886 38 1 6.0747 5.1966 0.4628 39 1 7.7612 5.1609 -0.1072 40 1 7.6133 6.2873 2.0879 41 1 8.5286 4.7674 2.2271 42 1 8.0069 4.7326 4.6817 43 1 7.0647 6.2335 4.5150 44 1 6.3139 4.7861 5.2289 45 1 5.2918 1.5921 3.8821 46 1 5.6815 2.9064 5.0173 47 1 4.1495 4.4201 3.8762 48 1 3.8566 3.2208 2.5938 49 1 3.2014 2.0464 5.0775 50 1 0.2599 1.2915 6.4576 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001565935812.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:29 Heat of formation + Delta-G solvation = 86.415929 kcal Electronic energy + Delta-G solvation = -31179.093725 eV Core-core repulsion = 27244.513113 eV Total energy + Delta-G solvation = -3934.580613 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.91612 -40.60960 -37.49544 -35.15831 -33.64840 -33.35748 -32.54542 -32.11124 -30.72194 -29.95593 -28.19041 -27.40620 -26.33884 -24.95665 -23.25580 -22.00683 -21.58433 -21.15457 -20.69021 -19.48347 -18.55909 -17.66524 -16.98528 -16.60214 -15.77411 -15.50204 -15.34585 -14.76263 -14.57787 -14.34611 -14.06086 -13.85139 -13.59240 -13.36457 -13.18273 -12.97021 -12.86668 -12.69108 -12.59464 -12.43647 -12.41644 -11.84873 -11.79471 -11.63398 -11.57518 -11.23560 -10.99022 -10.82545 -10.74665 -10.59229 -10.43965 -10.13267 -10.06523 -9.85590 -9.73844 -9.72269 -9.43764 -9.23717 -8.60230 -8.43467 -8.18952 -6.53281 -5.50023 -2.73344 1.80333 2.79256 2.92208 3.02190 3.38596 3.54920 3.60102 3.63457 4.14369 4.62512 4.65717 4.76371 4.82250 4.83138 4.91481 4.94987 5.04646 5.26505 5.29603 5.35027 5.38207 5.46423 5.50650 5.63236 5.66721 5.70982 5.77070 5.78888 5.81736 5.83656 5.93363 5.97349 6.09306 6.11943 6.23208 6.38270 6.42904 6.45626 6.59874 6.62830 6.70259 6.77050 6.86192 7.24726 7.29494 7.41052 7.69236 7.93387 8.35226 8.64001 8.69846 9.79919 10.46684 10.80961 11.74099 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.008010 B = 0.005618 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3494.839304 B = 4982.706393 C = 7664.169431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.291 3.709 3 N -0.520 5.520 4 C 0.253 3.747 5 C -0.047 4.047 6 C 0.508 3.492 7 O -0.469 6.469 8 N -0.614 5.614 9 C 0.108 3.892 10 C -0.136 4.136 11 C -0.113 4.113 12 C -0.108 4.108 13 H 0.085 0.915 14 C -0.144 4.144 15 C 0.164 3.836 16 H 0.064 0.936 17 C -0.137 4.137 18 C 0.173 3.827 19 N -0.721 5.721 20 C -0.211 4.211 21 H 0.064 0.936 22 C -0.023 4.023 23 N -0.939 5.939 24 Si 0.899 3.101 25 H -0.282 1.282 26 H -0.295 1.295 27 H -0.295 1.295 28 N -0.312 5.312 29 N -0.484 5.484 30 H 0.437 0.563 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.102 0.898 34 H 0.108 0.892 35 H 0.115 0.885 36 H 0.067 0.933 37 H 0.082 0.918 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.050 0.950 43 H 0.053 0.947 44 H 0.065 0.935 45 H 0.105 0.895 46 H 0.051 0.949 47 H -0.003 1.003 48 H 0.025 0.975 49 H 0.380 0.620 50 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.628 0.607 -16.093 20.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.012 3.988 3 N -0.249 5.249 4 C -0.031 4.031 5 C -0.089 4.089 6 C 0.293 3.707 7 O -0.341 6.341 8 N -0.350 5.350 9 C -0.015 4.015 10 C -0.174 4.174 11 C -0.151 4.151 12 C -0.128 4.128 13 H 0.103 0.897 14 C -0.202 4.202 15 C 0.061 3.939 16 H 0.082 0.918 17 C -0.174 4.174 18 C 0.045 3.955 19 N -0.363 5.363 20 C -0.343 4.343 21 H 0.082 0.918 22 C -0.218 4.218 23 N -0.590 5.590 24 Si 0.732 3.268 25 H -0.207 1.207 26 H -0.223 1.223 27 H -0.223 1.223 28 N -0.142 5.142 29 N -0.202 5.202 30 H 0.282 0.718 31 H 0.106 0.894 32 H 0.100 0.900 33 H 0.121 0.879 34 H 0.126 0.874 35 H 0.133 0.867 36 H 0.085 0.915 37 H 0.100 0.900 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.069 0.931 43 H 0.072 0.928 44 H 0.084 0.916 45 H 0.123 0.877 46 H 0.070 0.930 47 H 0.014 0.986 48 H 0.043 0.957 49 H 0.213 0.787 50 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 12.706 0.416 -15.661 20.171 hybrid contribution -1.277 -0.467 0.166 1.370 sum 11.429 -0.051 -15.495 19.254 Atomic orbital electron populations 1.20396 0.83873 1.05662 1.03834 1.24299 0.96547 0.82619 0.95288 1.70317 1.01090 1.29357 1.24109 1.23161 0.92712 0.89592 0.97606 1.19941 0.93380 0.98451 0.97146 1.20057 0.80166 0.79949 0.90481 1.90954 1.50928 1.48817 1.43369 1.47968 1.30463 1.49029 1.07532 1.21791 0.95201 0.94397 0.90110 1.22006 1.02319 0.95450 0.97673 1.21582 0.98663 1.00644 0.94187 1.21643 1.00337 0.95482 0.95295 0.89710 1.21789 1.01125 1.00784 0.96520 1.21238 0.98480 0.93347 0.80840 0.91777 1.22410 0.94327 1.04435 0.96213 1.20747 0.86829 0.92768 0.95128 1.42217 1.03384 1.43252 1.47442 1.19263 0.85053 1.13188 1.16828 0.91766 1.24638 0.97505 0.99431 1.00202 1.69697 1.31062 1.28855 1.29355 0.86188 0.85966 0.77727 0.76963 1.20721 1.22256 1.22284 1.77852 0.96920 1.12221 1.27175 1.47865 1.04233 1.09835 1.58252 0.71847 0.89383 0.89951 0.87906 0.87351 0.86686 0.91503 0.89963 0.91172 0.91060 0.91898 0.92122 0.93050 0.92770 0.91555 0.87704 0.93036 0.98561 0.95749 0.78669 0.94128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.91 10.51 36.01 0.38 -0.53 16 2 C 0.29 4.62 8.24 -155.70 -1.28 3.34 16 3 N -0.52 -9.83 11.19 -8.16 -0.09 -9.92 16 4 C 0.25 4.45 6.63 -156.86 -1.04 3.41 16 5 C -0.05 -0.65 4.69 -29.03 -0.14 -0.79 16 6 C 0.51 8.52 6.12 -10.98 -0.07 8.45 16 7 O -0.47 -10.30 9.96 5.55 0.06 -10.24 16 8 N -0.61 -8.30 2.92 -164.95 -0.48 -8.78 16 9 C 0.11 0.98 6.38 -3.49 -0.02 0.96 16 10 C -0.14 -1.17 6.10 -26.39 -0.16 -1.33 16 11 C -0.11 -1.08 5.16 -26.69 -0.14 -1.22 16 12 C -0.11 -1.38 2.02 -90.50 -0.18 -1.57 16 13 H 0.08 1.30 6.20 -51.93 -0.32 0.98 16 14 C -0.14 -1.75 8.97 37.16 0.33 -1.42 16 15 C 0.16 2.37 2.66 -67.60 -0.18 2.19 16 16 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 17 C -0.14 -2.63 4.22 -26.74 -0.11 -2.74 16 18 C 0.17 4.01 4.37 -4.04 -0.02 4.00 16 19 N -0.72 -20.66 5.57 -59.91 -0.33 -20.99 16 20 C -0.21 -6.51 9.99 -15.06 -0.15 -6.67 16 21 H 0.06 1.96 7.83 -52.49 -0.41 1.55 16 22 C -0.02 -0.73 5.50 -17.43 -0.10 -0.82 16 23 N -0.94 -30.67 13.06 55.49 0.72 -29.94 16 24 Si 0.90 23.92 29.55 -169.99 -5.02 18.89 16 25 H -0.28 -7.26 7.11 56.52 0.40 -6.86 16 26 H -0.29 -7.76 7.11 56.52 0.40 -7.36 16 27 H -0.30 -7.85 7.11 56.52 0.40 -7.44 16 28 N -0.31 -5.39 12.80 32.42 0.41 -4.98 16 29 N -0.48 -7.09 7.45 32.62 0.24 -6.85 16 30 H 0.44 4.60 8.96 -182.34 -1.63 2.96 16 31 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 34 H 0.11 1.14 7.69 -51.93 -0.40 0.74 16 35 H 0.12 1.38 7.94 -51.93 -0.41 0.97 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.08 0.59 5.93 -51.92 -0.31 0.29 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.07 0.95 6.72 -51.93 -0.35 0.60 16 45 H 0.11 2.32 5.69 -53.15 -0.30 2.01 16 46 H 0.05 0.98 6.87 -51.93 -0.36 0.62 16 47 H 0.00 -0.07 6.64 -51.93 -0.34 -0.42 16 48 H 0.02 0.61 5.13 -51.93 -0.27 0.34 16 49 H 0.38 11.67 7.67 -40.82 -0.31 11.36 16 50 H 0.25 7.82 8.31 -40.82 -0.34 7.48 16 LS Contribution 386.49 15.07 5.82 5.82 Total: -1.00 -40.15 386.49 -10.75 -50.89 By element: Atomic # 1 Polarization: 20.03 SS G_CDS: -9.20 Total: 10.83 kcal Atomic # 6 Polarization: 8.14 SS G_CDS: -2.87 Total: 5.26 kcal Atomic # 7 Polarization: -81.93 SS G_CDS: 0.48 Total: -81.46 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.06 Total: -10.24 kcal Atomic # 14 Polarization: 23.92 SS G_CDS: -5.02 Total: 18.89 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -40.15 -10.75 -50.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565935812.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.308 kcal (2) G-P(sol) polarization free energy of solvation -40.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds