Wall clock time and date at job start Tue Mar 31 2020 18:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.30829 * 125.95993 * 2 1 4 4 C 1.33241 * 109.82728 * 180.02562 * 3 2 1 5 5 C 1.50701 * 125.52539 * 180.02562 * 4 3 2 6 6 C 1.50699 * 109.47006 * 90.00435 * 5 4 3 7 7 O 1.21282 * 119.99980 * 0.02562 * 6 5 4 8 8 N 1.34774 * 119.99862 * 179.97438 * 6 5 4 9 9 C 1.46920 * 120.63294 * 6.32631 * 8 6 5 10 10 C 1.53193 * 108.77907 * 233.63398 * 9 8 6 11 11 C 1.53040 * 109.31041 * 305.36293 * 10 9 8 12 12 C 1.53043 * 109.53807 * 61.36588 * 11 10 9 13 13 H 1.09001 * 109.49391 * 58.58687 * 12 11 10 14 14 C 1.53002 * 109.49738 * 178.68272 * 12 11 10 15 15 C 1.46927 * 120.63310 * 186.35283 * 8 6 5 16 16 H 1.08996 * 109.58538 * 246.30330 * 15 8 6 17 17 C 1.53002 * 109.58173 * 6.58137 * 15 8 6 18 18 C 1.52998 * 109.47515 * 66.20029 * 17 15 8 19 19 N 1.46496 * 109.47628 * 175.73419 * 18 17 15 20 20 C 1.36932 * 120.00449 * 179.97438 * 19 18 17 21 21 H 1.08008 * 119.99674 * 359.97438 * 20 19 18 22 22 C 1.38812 * 120.00576 * 180.02562 * 20 19 18 23 23 N 1.31625 * 119.99287 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00551 * 180.02562 * 22 20 19 25 25 H 1.48510 * 109.46717 * 359.97438 * 24 22 20 26 26 H 1.48504 * 109.46954 * 239.99986 * 24 22 20 27 27 H 1.48495 * 109.47209 * 119.99787 * 24 22 20 28 28 N 1.30715 * 108.94498 * 0.27017 * 4 3 2 29 29 N 1.34428 * 125.95760 * 180.02562 * 2 1 3 30 30 H 0.97000 * 126.82601 * 359.97438 * 29 2 1 31 31 H 1.08997 * 109.47083 * 89.97315 * 1 2 3 32 32 H 1.08997 * 109.46992 * 209.96862 * 1 2 3 33 33 H 1.08995 * 109.46931 * 329.96825 * 1 2 3 34 34 H 1.08999 * 109.47501 * 329.99927 * 5 4 3 35 35 H 1.09003 * 109.46717 * 210.00006 * 5 4 3 36 36 H 1.09007 * 109.58838 * 353.42004 * 9 8 6 37 37 H 1.09004 * 109.58899 * 113.84208 * 9 8 6 38 38 H 1.08994 * 109.49878 * 65.31896 * 10 9 8 39 39 H 1.09004 * 109.49463 * 185.41811 * 10 9 8 40 40 H 1.08999 * 109.46186 * 181.38698 * 11 10 9 41 41 H 1.09001 * 109.46213 * 301.35837 * 11 10 9 42 42 H 1.08998 * 109.47065 * 179.84143 * 14 12 11 43 43 H 1.08998 * 109.47038 * 299.84156 * 14 12 11 44 44 H 1.08999 * 109.47080 * 59.83611 * 14 12 11 45 45 H 1.08997 * 109.47541 * 306.19403 * 17 15 8 46 46 H 1.09005 * 109.47165 * 186.19636 * 17 15 8 47 47 H 1.09000 * 109.47487 * 55.73111 * 18 17 15 48 48 H 1.09007 * 109.46801 * 295.73490 * 18 17 15 49 49 H 0.97000 * 120.00002 * 0.02562 * 19 18 17 50 50 H 0.96996 * 120.00201 * 0.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5553 0.6887 -0.0006 5 6 4.7373 1.6236 -0.0002 6 6 5.1316 1.9342 1.4207 7 8 4.5140 1.4442 2.3424 8 7 6.1713 2.7556 1.6673 9 6 6.8423 3.4642 0.5691 10 6 8.3441 3.1695 0.6368 11 6 8.8680 3.5283 2.0292 12 6 8.1595 2.6699 3.0796 13 1 8.3332 1.6154 2.8649 14 6 8.7073 3.0061 4.4680 15 6 6.6557 2.9589 3.0395 16 1 6.4712 3.9894 3.3431 17 6 5.9248 2.0062 3.9878 18 6 6.3134 0.5631 3.6603 19 7 5.6942 -0.3419 4.6318 20 6 5.9010 -1.6922 4.5383 21 1 6.5204 -2.0902 3.7480 22 6 5.3138 -2.5498 5.4585 23 7 4.5586 -2.0647 6.4212 24 14 5.5965 -4.3919 5.3314 25 1 6.4773 -4.6785 4.1704 26 1 4.2941 -5.0809 5.1461 27 1 6.2425 -4.8806 6.5759 28 7 3.6194 -0.6168 -0.0068 29 7 2.2964 -1.0881 -0.0005 30 1 2.0093 -2.0147 -0.0006 31 1 -0.3633 0.0005 -1.0276 32 1 -0.3633 -0.8902 0.5133 33 1 -0.3633 0.8897 0.5143 34 1 4.4701 2.5474 -0.5133 35 1 5.5742 1.1513 -0.5146 36 1 6.4449 3.1190 -0.3854 37 1 6.6754 4.5367 0.6703 38 1 8.5160 2.1104 0.4451 39 1 8.8658 3.7648 -0.1127 40 1 9.9412 3.3428 2.0724 41 1 8.6733 4.5818 2.2302 42 1 8.2005 2.3964 5.2160 43 1 9.7774 2.8003 4.4960 44 1 8.5346 4.0610 4.6811 45 1 4.8485 2.1289 3.8677 46 1 6.2038 2.2330 5.0168 47 1 7.3974 0.4592 3.7067 48 1 5.9669 0.3121 2.6577 49 1 5.1370 0.0155 5.3409 50 1 4.4121 -1.1082 6.4875 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001565935813.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:34 Heat of formation + Delta-G solvation = 85.745789 kcal Electronic energy + Delta-G solvation = -30955.463703 eV Core-core repulsion = 27020.854031 eV Total energy + Delta-G solvation = -3934.609672 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.04363 -40.69648 -37.60126 -35.35540 -33.88324 -33.46505 -32.69826 -32.26002 -30.72378 -30.05210 -28.19800 -27.46240 -26.36350 -24.85040 -23.19602 -22.20987 -21.71813 -21.23076 -20.82824 -19.59636 -18.63837 -17.75274 -17.17700 -16.73724 -15.89176 -15.67144 -15.48538 -14.78698 -14.70833 -14.32459 -14.05316 -13.94589 -13.80288 -13.57463 -13.38662 -13.31696 -12.93437 -12.86744 -12.74749 -12.61131 -12.48349 -11.94514 -11.84632 -11.72837 -11.64465 -11.31835 -10.92076 -10.88407 -10.72627 -10.45385 -10.40520 -10.14031 -10.02139 -9.97503 -9.92164 -9.90369 -9.36950 -8.97484 -8.65799 -8.52091 -8.24339 -6.64759 -5.88789 -2.82383 1.71797 2.69739 2.79001 2.91111 3.27043 3.59119 3.67167 3.76895 3.97504 4.55194 4.56316 4.68802 4.76602 4.80374 4.84438 4.86374 4.98904 5.14558 5.21744 5.24206 5.27826 5.30798 5.45047 5.55606 5.61469 5.63779 5.65136 5.67638 5.72471 5.79483 5.81609 5.89394 6.04275 6.05094 6.17578 6.31529 6.34046 6.37565 6.46157 6.51405 6.55076 6.67277 6.81001 7.14882 7.20465 7.33994 7.60465 8.03245 8.20087 8.52507 8.98507 9.51821 10.38263 10.56285 11.61248 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.006541 B = 0.005981 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4279.801150 B = 4680.253963 C = 8088.994175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.280 3.720 3 N -0.534 5.534 4 C 0.245 3.755 5 C -0.046 4.046 6 C 0.510 3.490 7 O -0.478 6.478 8 N -0.612 5.612 9 C 0.108 3.892 10 C -0.137 4.137 11 C -0.113 4.113 12 C -0.110 4.110 13 H 0.086 0.914 14 C -0.144 4.144 15 C 0.165 3.835 16 H 0.066 0.934 17 C -0.142 4.142 18 C 0.170 3.830 19 N -0.737 5.737 20 C -0.310 4.310 21 H 0.058 0.942 22 C -0.055 4.055 23 N -0.953 5.953 24 Si 1.083 2.917 25 H -0.297 1.297 26 H -0.296 1.296 27 H -0.294 1.294 28 N -0.291 5.291 29 N -0.477 5.477 30 H 0.440 0.560 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.115 0.885 35 H 0.111 0.889 36 H 0.083 0.917 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.065 0.935 43 H 0.054 0.946 44 H 0.051 0.949 45 H 0.108 0.892 46 H 0.051 0.949 47 H 0.003 0.997 48 H 0.030 0.970 49 H 0.363 0.637 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.648 13.598 -17.923 22.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.001 3.999 3 N -0.263 5.263 4 C -0.038 4.038 5 C -0.089 4.089 6 C 0.296 3.704 7 O -0.351 6.351 8 N -0.348 5.348 9 C -0.015 4.015 10 C -0.175 4.175 11 C -0.151 4.151 12 C -0.129 4.129 13 H 0.104 0.896 14 C -0.202 4.202 15 C 0.061 3.939 16 H 0.084 0.916 17 C -0.179 4.179 18 C 0.043 3.957 19 N -0.381 5.381 20 C -0.442 4.442 21 H 0.076 0.924 22 C -0.251 4.251 23 N -0.601 5.601 24 Si 0.915 3.085 25 H -0.224 1.224 26 H -0.224 1.224 27 H -0.222 1.222 28 N -0.120 5.120 29 N -0.195 5.195 30 H 0.285 0.715 31 H 0.107 0.893 32 H 0.102 0.898 33 H 0.115 0.885 34 H 0.133 0.867 35 H 0.130 0.870 36 H 0.101 0.899 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.084 0.916 43 H 0.073 0.927 44 H 0.070 0.930 45 H 0.126 0.874 46 H 0.070 0.930 47 H 0.020 0.980 48 H 0.048 0.952 49 H 0.196 0.804 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 0.674 11.726 -16.940 20.614 hybrid contribution 0.061 0.898 -0.523 1.041 sum 0.735 12.623 -17.463 21.561 Atomic orbital electron populations 1.20360 0.83860 1.05156 1.04088 1.24276 0.96491 0.82893 0.96207 1.70224 1.01237 1.29594 1.25288 1.23175 0.92479 0.89815 0.98318 1.19938 0.93668 0.98267 0.97025 1.20072 0.80812 0.79076 0.90437 1.90862 1.51557 1.49043 1.43601 1.47959 1.32710 1.46334 1.07765 1.21722 0.92825 0.96902 0.90071 1.21938 0.95297 1.02491 0.97779 1.21586 0.99764 0.99618 0.94122 1.21676 0.94383 1.01423 0.95445 0.89579 1.21779 1.00738 1.01211 0.96454 1.21237 0.92904 0.98989 0.80729 0.91604 1.22480 1.03540 0.95473 0.96395 1.20859 0.93506 0.87480 0.93820 1.42271 1.59617 1.03305 1.32937 1.20073 1.27705 0.84047 1.12358 0.92368 1.25639 0.98701 1.05296 0.95456 1.70770 1.41239 1.14068 1.33988 0.83175 0.75426 0.75023 0.74833 1.22359 1.22359 1.22189 1.78047 0.96630 1.12073 1.25214 1.47905 1.04235 1.10049 1.57316 0.71459 0.89265 0.89833 0.88460 0.86711 0.87049 0.89908 0.91355 0.91262 0.90904 0.91828 0.92053 0.91597 0.92710 0.93022 0.87402 0.93023 0.97987 0.95191 0.80449 0.93460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.63 10.51 36.01 0.38 -0.25 16 2 C 0.28 3.87 8.24 -155.69 -1.28 2.59 16 3 N -0.53 -8.78 11.19 -8.16 -0.09 -8.87 16 4 C 0.25 4.18 6.63 -156.85 -1.04 3.14 16 5 C -0.05 -0.63 4.69 -29.03 -0.14 -0.76 16 6 C 0.51 8.42 6.30 -10.99 -0.07 8.35 16 7 O -0.48 -10.33 9.90 5.56 0.06 -10.28 16 8 N -0.61 -8.23 2.94 -165.22 -0.49 -8.71 16 9 C 0.11 0.97 6.35 -3.71 -0.02 0.94 16 10 C -0.14 -1.17 6.08 -26.61 -0.16 -1.33 16 11 C -0.11 -1.10 5.17 -26.69 -0.14 -1.24 16 12 C -0.11 -1.45 1.98 -90.50 -0.18 -1.63 16 13 H 0.09 1.37 5.93 -51.93 -0.31 1.07 16 14 C -0.14 -1.83 8.97 37.16 0.33 -1.50 16 15 C 0.16 2.40 2.66 -67.60 -0.18 2.22 16 16 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 17 C -0.14 -2.75 4.19 -26.73 -0.11 -2.87 16 18 C 0.17 4.04 4.94 -4.04 -0.02 4.02 16 19 N -0.74 -21.33 5.60 -59.91 -0.34 -21.66 16 20 C -0.31 -9.78 9.99 -15.06 -0.15 -9.93 16 21 H 0.06 1.84 7.83 -52.48 -0.41 1.43 16 22 C -0.05 -1.74 5.50 -17.43 -0.10 -1.83 16 23 N -0.95 -32.02 13.70 55.49 0.76 -31.26 16 24 Si 1.08 28.39 29.92 -169.99 -5.09 23.30 16 25 H -0.30 -7.36 7.11 56.52 0.40 -6.96 16 26 H -0.30 -7.64 7.11 56.52 0.40 -7.24 16 27 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 28 N -0.29 -5.31 12.80 32.42 0.41 -4.90 16 29 N -0.48 -7.00 7.45 32.62 0.24 -6.75 16 30 H 0.44 4.93 8.96 -182.34 -1.63 3.30 16 31 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.11 1.17 7.68 -51.93 -0.40 0.77 16 35 H 0.11 1.28 7.95 -51.93 -0.41 0.86 16 36 H 0.08 0.58 5.93 -51.92 -0.31 0.27 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.07 1.00 6.76 -51.93 -0.35 0.65 16 43 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.11 2.37 5.55 -53.87 -0.30 2.07 16 46 H 0.05 1.00 6.95 -51.93 -0.36 0.64 16 47 H 0.00 0.06 5.96 -51.93 -0.31 -0.25 16 48 H 0.03 0.77 5.08 -51.93 -0.26 0.51 16 49 H 0.36 10.87 6.50 -40.82 -0.27 10.61 16 50 H 0.25 8.53 6.77 -40.82 -0.28 8.25 16 LS Contribution 384.42 15.07 5.79 5.79 Total: -1.00 -41.83 384.42 -10.65 -52.48 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: -9.04 Total: 10.94 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: -2.88 Total: -0.09 kcal Atomic # 7 Polarization: -82.66 SS G_CDS: 0.51 Total: -82.16 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.06 Total: -10.28 kcal Atomic # 14 Polarization: 28.39 SS G_CDS: -5.09 Total: 23.30 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -41.83 -10.65 -52.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565935813.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.228 kcal (2) G-P(sol) polarization free energy of solvation -41.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds