Wall clock time and date at job start Tue Mar 31 2020 18:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.30829 * 125.95993 * 2 1 4 4 C 1.33241 * 109.82728 * 180.02562 * 3 2 1 5 5 C 1.50701 * 125.52539 * 180.02562 * 4 3 2 6 6 C 1.50699 * 109.47006 * 90.00435 * 5 4 3 7 7 O 1.21282 * 119.99980 * 0.02562 * 6 5 4 8 8 N 1.34774 * 119.99862 * 179.97438 * 6 5 4 9 9 C 1.46920 * 120.63294 * 6.32631 * 8 6 5 10 10 C 1.53193 * 108.77907 * 233.63398 * 9 8 6 11 11 C 1.53040 * 109.31041 * 305.36293 * 10 9 8 12 12 C 1.53043 * 109.53807 * 61.36588 * 11 10 9 13 13 H 1.09001 * 109.49391 * 58.58687 * 12 11 10 14 14 C 1.53002 * 109.49738 * 178.68272 * 12 11 10 15 15 C 1.46927 * 120.63310 * 186.35283 * 8 6 5 16 16 H 1.08996 * 109.58538 * 246.30330 * 15 8 6 17 17 C 1.53002 * 109.58173 * 6.58137 * 15 8 6 18 18 C 1.52998 * 109.47515 * 66.20029 * 17 15 8 19 19 N 1.46496 * 109.47628 * 175.73419 * 18 17 15 20 20 C 1.36932 * 120.00449 * 179.97438 * 19 18 17 21 21 H 1.08008 * 119.99674 * 359.97438 * 20 19 18 22 22 C 1.38812 * 120.00576 * 180.02562 * 20 19 18 23 23 N 1.31625 * 119.99287 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00551 * 180.02562 * 22 20 19 25 25 H 1.48510 * 109.46717 * 359.97438 * 24 22 20 26 26 H 1.48504 * 109.46954 * 239.99986 * 24 22 20 27 27 H 1.48495 * 109.47209 * 119.99787 * 24 22 20 28 28 N 1.30715 * 108.94498 * 0.27017 * 4 3 2 29 29 N 1.34428 * 125.95760 * 180.02562 * 2 1 3 30 30 H 0.97000 * 126.82601 * 359.97438 * 29 2 1 31 31 H 1.08997 * 109.47083 * 89.97315 * 1 2 3 32 32 H 1.08997 * 109.46992 * 209.96862 * 1 2 3 33 33 H 1.08995 * 109.46931 * 329.96825 * 1 2 3 34 34 H 1.08999 * 109.47501 * 329.99927 * 5 4 3 35 35 H 1.09003 * 109.46717 * 210.00006 * 5 4 3 36 36 H 1.09007 * 109.58838 * 353.42004 * 9 8 6 37 37 H 1.09004 * 109.58899 * 113.84208 * 9 8 6 38 38 H 1.08994 * 109.49878 * 65.31896 * 10 9 8 39 39 H 1.09004 * 109.49463 * 185.41811 * 10 9 8 40 40 H 1.08999 * 109.46186 * 181.38698 * 11 10 9 41 41 H 1.09001 * 109.46213 * 301.35837 * 11 10 9 42 42 H 1.08998 * 109.47065 * 179.84143 * 14 12 11 43 43 H 1.08998 * 109.47038 * 299.84156 * 14 12 11 44 44 H 1.08999 * 109.47080 * 59.83611 * 14 12 11 45 45 H 1.08997 * 109.47541 * 306.19403 * 17 15 8 46 46 H 1.09005 * 109.47165 * 186.19636 * 17 15 8 47 47 H 1.09000 * 109.47487 * 55.73111 * 18 17 15 48 48 H 1.09007 * 109.46801 * 295.73490 * 18 17 15 49 49 H 0.97000 * 120.00002 * 0.02562 * 19 18 17 50 50 H 0.96996 * 120.00201 * 0.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5553 0.6887 -0.0006 5 6 4.7373 1.6236 -0.0002 6 6 5.1316 1.9342 1.4207 7 8 4.5140 1.4442 2.3424 8 7 6.1713 2.7556 1.6673 9 6 6.8423 3.4642 0.5691 10 6 8.3441 3.1695 0.6368 11 6 8.8680 3.5283 2.0292 12 6 8.1595 2.6699 3.0796 13 1 8.3332 1.6154 2.8649 14 6 8.7073 3.0061 4.4680 15 6 6.6557 2.9589 3.0395 16 1 6.4712 3.9894 3.3431 17 6 5.9248 2.0062 3.9878 18 6 6.3134 0.5631 3.6603 19 7 5.6942 -0.3419 4.6318 20 6 5.9010 -1.6922 4.5383 21 1 6.5204 -2.0902 3.7480 22 6 5.3138 -2.5498 5.4585 23 7 4.5586 -2.0647 6.4212 24 14 5.5965 -4.3919 5.3314 25 1 6.4773 -4.6785 4.1704 26 1 4.2941 -5.0809 5.1461 27 1 6.2425 -4.8806 6.5759 28 7 3.6194 -0.6168 -0.0068 29 7 2.2964 -1.0881 -0.0005 30 1 2.0093 -2.0147 -0.0006 31 1 -0.3633 0.0005 -1.0276 32 1 -0.3633 -0.8902 0.5133 33 1 -0.3633 0.8897 0.5143 34 1 4.4701 2.5474 -0.5133 35 1 5.5742 1.1513 -0.5146 36 1 6.4449 3.1190 -0.3854 37 1 6.6754 4.5367 0.6703 38 1 8.5160 2.1104 0.4451 39 1 8.8658 3.7648 -0.1127 40 1 9.9412 3.3428 2.0724 41 1 8.6733 4.5818 2.2302 42 1 8.2005 2.3964 5.2160 43 1 9.7774 2.8003 4.4960 44 1 8.5346 4.0610 4.6811 45 1 4.8485 2.1289 3.8677 46 1 6.2038 2.2330 5.0168 47 1 7.3974 0.4592 3.7067 48 1 5.9669 0.3121 2.6577 49 1 5.1370 0.0155 5.3409 50 1 4.4121 -1.1082 6.4875 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001565935813.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:33 Heat of formation + Delta-G solvation = 54.745897 kcal Electronic energy + Delta-G solvation = -30956.807960 eV Core-core repulsion = 27020.854031 eV Total energy + Delta-G solvation = -3935.953928 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.18786 -41.90121 -38.74513 -37.19381 -35.44690 -34.52365 -34.05380 -33.36527 -32.50701 -31.19388 -29.60288 -28.63805 -27.38324 -26.40509 -25.06030 -23.85013 -22.88192 -22.27791 -21.95465 -20.80785 -19.81353 -19.39869 -18.87776 -18.03161 -17.24130 -16.94005 -16.62119 -16.30639 -16.14415 -15.66053 -15.54610 -15.36535 -15.05685 -14.83301 -14.72718 -14.40082 -14.11711 -14.00084 -13.67440 -13.62826 -13.45658 -13.18317 -13.09958 -12.83800 -12.77531 -12.67965 -12.63364 -12.44740 -12.23510 -11.96504 -11.88739 -11.67437 -11.45738 -11.33627 -11.18671 -11.15012 -11.10066 -10.86547 -10.55021 -9.88077 -9.48996 -9.00864 -8.46758 -5.34625 0.58180 1.46037 1.58608 1.60418 1.68956 1.72788 1.74311 2.19195 2.64854 2.98414 3.34498 3.49010 3.54439 3.73304 3.82514 3.84029 3.92223 4.00415 4.12654 4.23715 4.29171 4.33632 4.36002 4.49242 4.52152 4.58704 4.64934 4.66331 4.71516 4.76881 4.85691 4.87768 4.91048 4.99303 5.01016 5.11433 5.23136 5.24328 5.26432 5.31206 5.36638 5.38955 5.44588 5.49956 5.56302 5.77335 6.16599 6.42209 6.49133 7.04456 7.07914 7.31488 7.98960 8.13304 9.06007 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.006541 B = 0.005981 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4279.801150 B = 4680.253963 C = 8088.994175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.282 3.718 3 N -0.562 5.562 4 C 0.236 3.764 5 C -0.042 4.042 6 C 0.503 3.497 7 O -0.542 6.542 8 N -0.606 5.606 9 C 0.099 3.901 10 C -0.133 4.133 11 C -0.107 4.107 12 C -0.106 4.106 13 H 0.050 0.950 14 C -0.142 4.142 15 C 0.169 3.831 16 H 0.090 0.910 17 C -0.126 4.126 18 C 0.182 3.818 19 N -0.751 5.751 20 C -0.322 4.322 21 H 0.052 0.948 22 C -0.111 4.111 23 N -0.975 5.975 24 Si 1.134 2.866 25 H -0.276 1.276 26 H -0.288 1.288 27 H -0.282 1.282 28 N -0.344 5.344 29 N -0.480 5.480 30 H 0.451 0.549 31 H 0.121 0.879 32 H 0.102 0.898 33 H 0.098 0.902 34 H 0.152 0.848 35 H 0.131 0.869 36 H 0.106 0.894 37 H 0.095 0.905 38 H 0.051 0.949 39 H 0.108 0.892 40 H 0.072 0.928 41 H 0.082 0.918 42 H 0.030 0.970 43 H 0.065 0.935 44 H 0.074 0.926 45 H 0.083 0.917 46 H 0.043 0.957 47 H -0.001 1.001 48 H 0.017 0.983 49 H 0.353 0.647 50 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.507 15.100 -20.241 25.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.004 3.996 3 N -0.293 5.293 4 C -0.048 4.048 5 C -0.084 4.084 6 C 0.291 3.709 7 O -0.420 6.420 8 N -0.340 5.340 9 C -0.022 4.022 10 C -0.171 4.171 11 C -0.145 4.145 12 C -0.125 4.125 13 H 0.068 0.932 14 C -0.199 4.199 15 C 0.065 3.935 16 H 0.108 0.892 17 C -0.163 4.163 18 C 0.056 3.944 19 N -0.394 5.394 20 C -0.454 4.454 21 H 0.070 0.930 22 C -0.301 4.301 23 N -0.624 5.624 24 Si 0.958 3.042 25 H -0.202 1.202 26 H -0.214 1.214 27 H -0.209 1.209 28 N -0.173 5.173 29 N -0.199 5.199 30 H 0.298 0.702 31 H 0.139 0.861 32 H 0.120 0.880 33 H 0.116 0.884 34 H 0.169 0.831 35 H 0.149 0.851 36 H 0.125 0.875 37 H 0.114 0.886 38 H 0.070 0.930 39 H 0.126 0.874 40 H 0.091 0.909 41 H 0.101 0.899 42 H 0.049 0.951 43 H 0.084 0.916 44 H 0.093 0.907 45 H 0.101 0.899 46 H 0.061 0.939 47 H 0.016 0.984 48 H 0.034 0.966 49 H 0.184 0.816 50 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 1.578 13.278 -19.318 23.494 hybrid contribution -0.233 0.490 0.173 0.569 sum 1.345 13.768 -19.144 23.619 Atomic orbital electron populations 1.20630 0.80050 1.06070 1.06370 1.25295 0.98394 0.82079 0.93830 1.70251 1.01405 1.30821 1.26802 1.23785 0.93671 0.89946 0.97379 1.20092 0.93369 0.99472 0.95432 1.20640 0.80729 0.78540 0.91041 1.90845 1.53975 1.51656 1.45563 1.48083 1.31861 1.45585 1.08476 1.22162 0.92768 0.97935 0.89326 1.21949 0.95148 1.02120 0.97930 1.21569 0.99801 0.99789 0.93323 1.21598 0.93606 1.00196 0.97100 0.93174 1.21761 1.00963 1.01960 0.95257 1.21157 0.93256 0.98438 0.80608 0.89222 1.22219 1.02636 0.94008 0.97480 1.20885 0.92453 0.89188 0.91852 1.42525 1.59788 1.03403 1.33665 1.20353 1.27405 0.85521 1.12084 0.93028 1.27315 0.98018 1.09987 0.94774 1.70908 1.42927 1.13200 1.35369 0.82558 0.76103 0.69521 0.75994 1.20172 1.21427 1.20858 1.77921 0.98872 1.13170 1.27347 1.47877 1.03505 1.11003 1.57511 0.70164 0.86118 0.87962 0.88378 0.83071 0.85119 0.87548 0.88642 0.93020 0.87359 0.90886 0.89913 0.95111 0.91569 0.90656 0.89889 0.93854 0.98385 0.96579 0.81636 0.95056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.09 10.51 71.24 0.75 -0.34 16 2 C 0.28 7.77 8.24 138.23 1.14 8.90 16 3 N -0.56 -18.60 11.19 -179.72 -2.01 -20.61 16 4 C 0.24 8.13 6.63 138.63 0.92 9.05 16 5 C -0.04 -1.10 4.69 29.10 0.14 -0.96 16 6 C 0.50 16.71 6.30 87.66 0.55 17.26 16 7 O -0.54 -24.68 9.90 -3.04 -0.03 -24.71 16 8 N -0.61 -15.53 2.94 -795.03 -2.34 -17.86 16 9 C 0.10 1.40 6.35 86.36 0.55 1.94 16 10 C -0.13 -1.78 6.08 30.67 0.19 -1.60 16 11 C -0.11 -1.72 5.17 30.62 0.16 -1.56 16 12 C -0.11 -2.68 1.98 -10.72 -0.02 -2.70 16 13 H 0.05 1.64 5.93 -2.39 -0.01 1.62 16 14 C -0.14 -3.51 8.97 71.98 0.65 -2.86 16 15 C 0.17 4.84 2.66 44.97 0.12 4.96 16 16 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 17 C -0.13 -5.16 4.19 30.59 0.13 -5.04 16 18 C 0.18 9.14 4.94 86.38 0.43 9.57 16 19 N -0.75 -45.94 5.60 -343.45 -1.92 -47.87 16 20 C -0.32 -21.09 9.99 84.03 0.84 -20.25 16 21 H 0.05 3.38 7.83 -2.91 -0.02 3.36 16 22 C -0.11 -7.21 5.50 84.86 0.47 -6.75 16 23 N -0.98 -67.48 13.70 21.65 0.30 -67.18 16 24 Si 1.13 57.73 29.92 68.60 2.05 59.79 16 25 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 26 H -0.29 -14.19 7.11 99.48 0.71 -13.49 16 27 H -0.28 -13.77 7.11 99.48 0.71 -13.06 16 28 N -0.34 -12.96 12.80 -51.33 -0.66 -13.62 16 29 N -0.48 -14.38 7.45 -50.70 -0.38 -14.76 16 30 H 0.45 10.36 8.96 -213.10 -1.91 8.45 16 31 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.15 2.71 7.68 -2.39 -0.02 2.70 16 35 H 0.13 2.84 7.95 -2.39 -0.02 2.82 16 36 H 0.11 1.03 5.93 -2.38 -0.01 1.02 16 37 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.03 0.96 6.76 -2.39 -0.02 0.94 16 43 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 45 H 0.08 3.90 5.55 -33.13 -0.18 3.72 16 46 H 0.04 1.79 6.95 -2.38 -0.02 1.77 16 47 H 0.00 -0.07 5.96 -2.39 -0.01 -0.09 16 48 H 0.02 0.89 5.08 -2.38 -0.01 0.87 16 49 H 0.35 22.56 6.50 -92.71 -0.60 21.96 16 50 H 0.24 16.82 6.77 -92.71 -0.63 16.20 16 Total: -1.00 -97.65 384.42 0.44 -97.21 By element: Atomic # 1 Polarization: 41.55 SS G_CDS: -1.57 Total: 39.98 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: 6.99 Total: 9.62 kcal Atomic # 7 Polarization: -174.89 SS G_CDS: -7.01 Total: -181.89 kcal Atomic # 8 Polarization: -24.68 SS G_CDS: -0.03 Total: -24.71 kcal Atomic # 14 Polarization: 57.73 SS G_CDS: 2.05 Total: 59.79 kcal Total: -97.65 0.44 -97.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565935813.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.956 kcal (2) G-P(sol) polarization free energy of solvation -97.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds