Wall clock time and date at job start Tue Mar 31 2020 19:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50703 * 109.46944 * 2 1 4 4 C 1.35357 * 126.38762 * 85.05428 * 3 2 1 5 5 C 1.41505 * 105.50360 * 179.97438 * 4 3 2 6 6 C 1.47710 * 126.51624 * 180.25708 * 5 4 3 7 7 O 1.21564 * 120.00462 * 359.71588 * 6 5 4 8 8 N 1.34780 * 119.99466 * 179.71307 * 6 5 4 9 9 C 1.46502 * 119.99857 * 180.02562 * 8 6 5 10 10 C 1.52995 * 109.47136 * 180.02562 * 9 8 6 11 11 N 1.46907 * 109.46930 * 180.02562 * 10 9 8 12 12 C 1.46897 * 110.99878 * 294.29995 * 11 10 9 13 13 C 1.53243 * 109.33866 * 172.75023 * 12 11 10 14 14 N 1.47079 * 108.52460 * 53.82599 * 13 12 11 15 15 C 1.36936 * 120.87998 * 128.83767 * 14 13 12 16 16 H 1.08006 * 119.99835 * 206.56377 * 15 14 13 17 17 C 1.38808 * 120.00220 * 26.56071 * 15 14 13 18 18 N 1.31624 * 119.99567 * 17.02816 * 17 15 14 19 19 Si 1.86796 * 120.00257 * 197.02605 * 17 15 14 20 20 H 1.48501 * 109.47321 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46966 * 120.00192 * 19 17 15 22 22 H 1.48498 * 109.47149 * 239.99823 * 19 17 15 23 23 C 1.47088 * 118.23740 * 308.82076 * 14 13 12 24 24 C 1.46903 * 110.99753 * 169.99851 * 11 10 9 25 25 N 1.31803 * 106.96201 * 359.97438 * 5 4 3 26 26 N 1.28474 * 110.07589 * 359.97438 * 25 5 4 27 27 C 1.46502 * 124.88367 * 180.02562 * 26 25 5 28 28 H 1.09000 * 109.47026 * 60.00466 * 1 2 3 29 29 H 1.09000 * 109.47393 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47247 * 300.00741 * 1 2 3 31 31 H 1.09002 * 109.47247 * 239.99259 * 2 1 3 32 32 H 1.08996 * 109.46554 * 119.99449 * 2 1 3 33 33 H 1.08005 * 127.24965 * 359.97438 * 4 3 2 34 34 H 0.97001 * 120.00212 * 0.02562 * 8 6 5 35 35 H 1.08996 * 109.46870 * 300.00513 * 9 8 6 36 36 H 1.09001 * 109.47115 * 59.99784 * 9 8 6 37 37 H 1.09005 * 109.47312 * 299.99559 * 10 9 8 38 38 H 1.08995 * 109.47443 * 60.00129 * 10 9 8 39 39 H 1.09002 * 109.49210 * 292.70620 * 12 11 10 40 40 H 1.08997 * 109.49648 * 52.78942 * 12 11 10 41 41 H 1.09002 * 109.62574 * 294.11843 * 13 12 11 42 42 H 1.08996 * 109.62853 * 173.54540 * 13 12 11 43 43 H 0.97006 * 119.99418 * 179.97438 * 18 17 15 44 44 H 1.08994 * 109.62556 * 291.46995 * 23 14 13 45 45 H 1.09000 * 109.78493 * 170.98411 * 23 14 13 46 46 H 1.09001 * 109.49194 * 307.20947 * 24 11 10 47 47 H 1.08997 * 109.49130 * 67.29625 * 24 11 10 48 48 H 1.08999 * 109.47217 * 89.98024 * 27 26 25 49 49 H 1.09005 * 109.46410 * 209.97519 * 27 26 25 50 50 H 1.08997 * 109.47262 * 329.97247 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2114 2.2092 1.0856 5 6 2.6936 3.4410 0.5831 6 6 3.0489 4.6353 1.3764 7 8 2.9313 4.6185 2.5862 8 7 3.5035 5.7436 0.7588 9 6 3.8565 6.9280 1.5456 10 6 4.3399 8.0370 0.6090 11 7 4.6944 9.2243 1.3981 12 6 3.5084 9.7980 2.0477 13 6 3.9428 10.9174 2.9999 14 7 4.7656 11.8772 2.2482 15 6 4.4891 13.2179 2.2823 16 1 4.7747 13.8494 1.4539 17 6 3.8418 13.7654 3.3814 18 7 3.7907 13.0980 4.5147 19 14 3.0434 15.4492 3.2520 20 1 3.2397 15.9862 1.8815 21 1 1.5901 15.3308 3.5334 22 1 3.6652 16.3689 4.2383 23 6 5.8936 11.3587 1.4593 24 6 5.3823 10.2221 0.5678 25 7 2.7712 3.3180 -0.7269 26 7 2.3895 2.1441 -1.0829 27 6 2.3469 1.6602 -2.4651 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5137 0.8900 33 1 2.0253 1.9523 2.1180 34 1 3.5970 5.7572 -0.2066 35 1 2.9808 7.2731 2.0953 36 1 4.6498 6.6740 2.2486 37 1 5.2156 7.6920 0.0590 38 1 3.5463 8.2909 -0.0936 39 1 2.8393 10.2048 1.2894 40 1 2.9909 9.0216 2.6112 41 1 4.5271 10.4960 3.8179 42 1 3.0624 11.4222 3.3974 43 1 3.3386 13.4808 5.2829 44 1 6.6653 10.9798 2.1292 45 1 6.3059 12.1540 0.8383 46 1 6.2239 9.7531 0.0580 47 1 4.6871 10.6229 -0.1698 48 1 3.3017 1.1994 -2.7183 49 1 1.5496 0.9240 -2.5678 50 1 2.1576 2.4969 -3.1374 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566654118.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:06 Heat of formation + Delta-G solvation = 73.102882 kcal Electronic energy + Delta-G solvation = -28342.751048 eV Core-core repulsion = 24407.593138 eV Total energy + Delta-G solvation = -3935.157910 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.01377 -39.44576 -38.11612 -35.35737 -34.86941 -33.89430 -33.70798 -31.42142 -29.89304 -29.81275 -29.08312 -27.65148 -25.84159 -24.16622 -23.62877 -22.88333 -22.43279 -21.22889 -21.16330 -19.72203 -19.05113 -17.55080 -16.84933 -16.68913 -16.62527 -15.94412 -15.43575 -15.07417 -14.85099 -14.56372 -14.44541 -14.28965 -13.96667 -13.82056 -13.60092 -13.42575 -13.36338 -13.27695 -13.05878 -12.91171 -12.77585 -12.44196 -12.10611 -11.68596 -11.58132 -11.38798 -11.23540 -11.08285 -11.01783 -10.72574 -10.41154 -10.28411 -10.16622 -10.01239 -9.71017 -9.56816 -9.44062 -9.25007 -8.97253 -8.47172 -7.83375 -6.62504 -5.73858 -3.15014 1.34935 1.81755 2.08448 3.07276 3.35248 3.39998 3.47593 3.49795 3.95153 4.08385 4.38315 4.46260 4.53640 4.54671 4.61525 4.73298 4.82066 4.96712 4.99325 5.07934 5.21130 5.27281 5.35942 5.39243 5.43938 5.47540 5.59894 5.62904 5.69349 5.88038 5.95726 6.01934 6.10199 6.14551 6.16881 6.26211 6.37209 6.40108 6.44679 6.58500 6.73651 6.96881 7.28796 7.37132 7.58932 7.67551 7.69638 7.74315 7.85763 8.18372 8.47662 9.25397 9.88928 10.47548 11.34940 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.025779 B = 0.001801 C = 0.001755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.885227 B =15543.195652 C =15946.601981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.053 4.053 3 C 0.011 3.989 4 C -0.175 4.175 5 C -0.011 4.011 6 C 0.603 3.397 7 O -0.529 6.529 8 N -0.716 5.716 9 C 0.121 3.879 10 C 0.045 3.955 11 N -0.529 5.529 12 C 0.030 3.970 13 C 0.177 3.823 14 N -0.596 5.596 15 C -0.251 4.251 16 H 0.066 0.934 17 C 0.000 4.000 18 N -0.902 5.902 19 Si 0.902 3.098 20 H -0.279 1.279 21 H -0.289 1.289 22 H -0.290 1.290 23 C 0.148 3.852 24 C 0.046 3.954 25 N -0.263 5.263 26 N -0.282 5.282 27 C 0.084 3.916 28 H 0.053 0.947 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.092 0.908 33 H 0.162 0.838 34 H 0.404 0.596 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.032 0.968 39 H 0.026 0.974 40 H 0.065 0.935 41 H 0.028 0.972 42 H 0.089 0.911 43 H 0.253 0.747 44 H 0.026 0.974 45 H 0.056 0.944 46 H 0.062 0.938 47 H 0.028 0.972 48 H 0.085 0.915 49 H 0.094 0.906 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.391 -28.705 -15.321 32.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.092 4.092 3 C -0.113 4.113 4 C -0.203 4.203 5 C -0.171 4.171 6 C 0.386 3.614 7 O -0.403 6.403 8 N -0.367 5.367 9 C -0.002 4.002 10 C -0.084 4.084 11 N -0.254 5.254 12 C -0.098 4.098 13 C 0.051 3.949 14 N -0.319 5.319 15 C -0.381 4.381 16 H 0.084 0.916 17 C -0.198 4.198 18 N -0.547 5.547 19 Si 0.732 3.268 20 H -0.204 1.204 21 H -0.216 1.216 22 H -0.217 1.217 23 C 0.022 3.978 24 C -0.083 4.083 25 N -0.099 5.099 26 N -0.070 5.070 27 C -0.056 4.056 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.110 0.890 33 H 0.180 0.820 34 H 0.238 0.762 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.051 0.949 39 H 0.044 0.956 40 H 0.083 0.917 41 H 0.046 0.954 42 H 0.107 0.893 43 H 0.063 0.937 44 H 0.044 0.956 45 H 0.074 0.926 46 H 0.080 0.920 47 H 0.046 0.954 48 H 0.103 0.897 49 H 0.113 0.887 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.914 -28.194 -15.006 32.178 hybrid contribution -1.149 0.673 -0.558 1.443 sum -5.063 -27.522 -15.564 32.020 Atomic orbital electron populations 1.21779 0.93950 1.02264 1.02717 1.20114 0.96485 0.88689 1.03926 1.21391 1.06049 0.97007 0.86834 1.21516 1.06726 0.92306 0.99729 1.21911 1.08460 0.96933 0.89815 1.16834 0.77149 0.81050 0.86319 1.90821 1.53727 1.82671 1.13122 1.45794 1.66301 1.13372 1.11279 1.21425 1.01310 0.83422 0.94072 1.22190 0.99545 0.91848 0.94792 1.61874 1.26450 1.06141 1.30954 1.23010 0.90364 0.98341 0.98131 1.20874 0.96374 0.86947 0.90657 1.44133 1.29255 1.03165 1.55341 1.19229 1.34832 0.84065 0.99964 0.91629 1.25030 1.02323 0.97824 0.94639 1.70047 1.45607 1.38489 1.00537 0.86233 0.79143 0.84035 0.77421 1.20360 1.21606 1.21726 1.20972 0.90690 0.92958 0.93211 1.22623 0.97060 0.93572 0.95055 1.73508 1.18587 1.02819 1.14988 1.45296 1.45690 1.08188 1.07829 1.22166 1.04212 1.01620 0.77596 0.92811 0.91663 0.91746 0.90735 0.89000 0.82046 0.76178 0.90858 0.90187 0.90835 0.94946 0.95612 0.91693 0.95400 0.89310 0.93658 0.95593 0.92592 0.91980 0.95372 0.89655 0.88721 0.88382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.60 9.89 37.16 0.37 -0.23 16 2 C -0.05 -0.23 6.00 -27.88 -0.17 -0.40 16 3 C 0.01 0.09 6.17 -82.21 -0.51 -0.42 16 4 C -0.17 -1.90 10.73 -39.37 -0.42 -2.32 16 5 C -0.01 -0.14 7.13 -82.77 -0.59 -0.73 16 6 C 0.60 8.92 7.82 -12.39 -0.10 8.82 16 7 O -0.53 -9.58 16.93 5.31 0.09 -9.49 16 8 N -0.72 -9.34 5.55 -61.30 -0.34 -9.68 16 9 C 0.12 1.76 5.60 -4.04 -0.02 1.74 16 10 C 0.05 0.65 5.08 -3.82 -0.02 0.63 16 11 N -0.53 -9.57 4.63 -234.32 -1.08 -10.65 16 12 C 0.03 0.62 5.46 -3.70 -0.02 0.59 16 13 C 0.18 4.41 5.42 -3.60 -0.02 4.40 16 14 N -0.60 -15.41 3.04 -172.01 -0.52 -15.94 16 15 C -0.25 -7.04 9.63 -15.06 -0.15 -7.19 16 16 H 0.07 1.80 7.88 -52.48 -0.41 1.39 16 17 C 0.00 0.01 4.93 -17.43 -0.09 -0.08 16 18 N -0.90 -26.75 11.15 55.49 0.62 -26.13 16 19 Si 0.90 22.04 29.59 -169.99 -5.03 17.01 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 C 0.15 3.21 6.69 -3.60 -0.02 3.19 16 24 C 0.05 0.84 5.62 -3.70 -0.02 0.82 16 25 N -0.26 -2.92 11.67 33.42 0.39 -2.53 16 26 N -0.28 -2.32 3.70 -63.85 -0.24 -2.56 16 27 C 0.08 0.29 10.89 59.85 0.65 0.94 16 28 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.19 7.42 -51.93 -0.39 -0.20 16 32 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.16 1.64 8.06 -52.48 -0.42 1.21 16 34 H 0.40 4.45 8.20 -40.82 -0.33 4.11 16 35 H 0.07 1.17 6.40 -51.93 -0.33 0.84 16 36 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.07 0.93 7.97 -51.93 -0.41 0.52 16 38 H 0.03 0.45 8.12 -51.93 -0.42 0.03 16 39 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 1.22 6.16 -51.93 -0.32 0.90 16 41 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.09 2.44 6.12 -51.93 -0.32 2.12 16 43 H 0.25 7.23 8.31 -40.82 -0.34 6.90 16 44 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.06 1.15 7.96 -51.93 -0.41 0.74 16 46 H 0.06 0.95 7.99 -51.93 -0.41 0.54 16 47 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 49 H 0.09 0.11 7.44 -51.93 -0.39 -0.28 16 50 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 LS Contribution 402.25 15.07 6.06 6.06 Total: -1.00 -34.91 402.25 -9.54 -44.45 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -8.36 Total: -0.31 kcal Atomic # 6 Polarization: 10.88 SS G_CDS: -1.12 Total: 9.75 kcal Atomic # 7 Polarization: -66.30 SS G_CDS: -1.18 Total: -67.48 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.09 Total: -9.49 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.03 Total: 17.01 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.91 -9.54 -44.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566654118.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.554 kcal (2) G-P(sol) polarization free energy of solvation -34.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds