Wall clock time and date at job start Tue Mar 31 2020 18:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30499 * 125.65339 * 2 1 4 4 C 1.34125 * 109.25942 * 180.28718 * 3 2 1 5 5 C 1.34667 * 108.01813 * 359.72677 * 4 3 2 6 6 N 1.35044 * 125.64785 * 179.81733 * 2 1 3 7 7 C 1.46494 * 126.40128 * 359.97438 * 6 2 1 8 8 C 1.50702 * 109.47427 * 84.70730 * 7 6 2 9 9 O 1.21283 * 119.99758 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00293 * 180.02562 * 8 7 6 11 11 C 1.46501 * 119.99880 * 0.02562 * 10 8 7 12 12 C 1.46500 * 119.99975 * 180.02562 * 10 8 7 13 13 C 1.52998 * 109.47391 * 89.99940 * 12 10 8 14 14 N 1.46903 * 109.46998 * 180.02562 * 13 12 10 15 15 C 1.46897 * 110.99541 * 294.29743 * 14 13 12 16 16 C 1.53241 * 109.34066 * 172.74984 * 15 14 13 17 17 N 1.47084 * 108.52071 * 53.82818 * 16 15 14 18 18 C 1.36931 * 120.88049 * 128.84121 * 17 16 15 19 19 H 1.08004 * 120.00011 * 206.56822 * 18 17 16 20 20 C 1.38810 * 120.00151 * 26.56586 * 18 17 16 21 21 N 1.31625 * 120.00056 * 17.01639 * 20 18 17 22 22 Si 1.86801 * 120.00026 * 197.01665 * 20 18 17 23 23 H 1.48503 * 109.47053 * 59.99951 * 22 20 18 24 24 H 1.48503 * 109.47100 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47082 * 299.99831 * 22 20 18 26 26 C 1.47087 * 118.23637 * 308.81741 * 17 16 15 27 27 C 1.46900 * 110.99679 * 169.99865 * 14 13 12 28 28 H 1.08997 * 109.47919 * 270.17871 * 1 2 3 29 29 H 1.09007 * 109.46966 * 30.18147 * 1 2 3 30 30 H 1.09001 * 109.47202 * 150.17364 * 1 2 3 31 31 H 1.07993 * 125.99192 * 179.72428 * 4 3 2 32 32 H 1.08002 * 126.59147 * 179.97438 * 5 4 3 33 33 H 1.09002 * 109.47693 * 204.71241 * 7 6 2 34 34 H 1.09007 * 109.47075 * 324.70901 * 7 6 2 35 35 H 1.09002 * 109.46888 * 89.99946 * 11 10 8 36 36 H 1.08999 * 109.47312 * 210.00208 * 11 10 8 37 37 H 1.08997 * 109.47226 * 330.00478 * 11 10 8 38 38 H 1.09002 * 109.46687 * 209.99896 * 12 10 8 39 39 H 1.09001 * 109.47010 * 329.99648 * 12 10 8 40 40 H 1.09002 * 109.47169 * 299.99660 * 13 12 10 41 41 H 1.09001 * 109.47282 * 59.99875 * 13 12 10 42 42 H 1.08999 * 109.49753 * 292.70655 * 15 14 13 43 43 H 1.09002 * 109.49552 * 52.79279 * 15 14 13 44 44 H 1.09005 * 109.62753 * 294.12430 * 16 15 14 45 45 H 1.08991 * 109.63698 * 173.54131 * 16 15 14 46 46 H 0.96993 * 120.00014 * 180.02562 * 21 20 18 47 47 H 1.08994 * 109.63144 * 291.47401 * 26 17 16 48 48 H 1.09004 * 109.78362 * 170.98593 * 26 17 16 49 49 H 1.08996 * 109.49327 * 307.20921 * 27 14 13 50 50 H 1.09001 * 109.49446 * 67.29250 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2676 1.0604 0.0000 4 6 3.5543 0.6818 -0.0063 5 6 3.5925 -0.6643 -0.0043 6 7 2.2940 -1.0974 0.0035 7 6 1.8425 -2.4910 0.0085 8 6 1.5625 -2.9334 -1.4047 9 8 1.7246 -2.1608 -2.3254 10 7 1.1319 -4.1877 -1.6454 11 6 0.9355 -5.1208 -0.5332 12 6 0.8602 -4.6179 -3.0192 13 6 2.1318 -5.2115 -3.6287 14 7 1.8594 -5.6423 -5.0064 15 6 0.8999 -6.7543 -5.0302 16 6 0.5053 -7.0532 -6.4805 17 7 1.7314 -7.2729 -7.2625 18 6 1.8749 -8.3864 -8.0465 19 1 2.8608 -8.7698 -8.2647 20 6 0.7534 -9.0225 -8.5607 21 7 -0.4037 -8.3958 -8.5886 22 14 0.8863 -10.7678 -9.2130 23 1 1.3428 -11.6695 -8.1249 24 1 -0.4424 -11.2161 -9.7019 25 1 1.8639 -10.8056 -10.3301 26 6 2.7992 -6.2646 -7.1806 27 6 3.1034 -5.9969 -5.7027 28 1 -0.3635 0.0032 1.0276 29 1 -0.3633 0.8884 -0.5167 30 1 -0.3634 -0.8915 -0.5111 31 1 4.4097 1.3410 -0.0121 32 1 4.4775 -1.2833 -0.0085 33 1 2.6187 -3.1230 0.4400 34 1 0.9327 -2.5761 0.6028 35 1 -0.0865 -5.0360 -0.1639 36 1 1.1141 -6.1394 -0.8776 37 1 1.6328 -4.8812 0.2696 38 1 0.0731 -5.3720 -3.0148 39 1 0.5391 -3.7610 -3.6114 40 1 2.9189 -4.4574 -3.6331 41 1 2.4529 -6.0684 -3.0364 42 1 1.3575 -7.6393 -4.5882 43 1 0.0117 -6.4806 -4.4607 44 1 -0.0448 -6.2069 -6.8921 45 1 -0.1157 -7.9482 -6.5141 46 1 -1.1875 -8.8403 -8.9476 47 1 2.4696 -5.3426 -7.6594 48 1 3.6956 -6.6353 -7.6777 49 1 3.8133 -5.1739 -5.6208 50 1 3.5304 -6.8924 -5.2512 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567720913.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:42 Heat of formation + Delta-G solvation = 76.711494 kcal Electronic energy + Delta-G solvation = -29270.508843 eV Core-core repulsion = 25335.507415 eV Total energy + Delta-G solvation = -3935.001428 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.37804 -40.16384 -38.19942 -36.11607 -34.55237 -34.17205 -31.96254 -31.66640 -29.96996 -29.87006 -28.17481 -27.12891 -26.93155 -25.61720 -23.47335 -22.60171 -21.83104 -21.51516 -20.40091 -19.39125 -19.13578 -17.82858 -17.45787 -16.89280 -16.27299 -16.08224 -15.42992 -14.94610 -14.76428 -14.58720 -14.37184 -14.12874 -13.78454 -13.66553 -13.63682 -13.51429 -13.45162 -13.22804 -12.99430 -12.93639 -12.82864 -12.69292 -12.59528 -12.33875 -11.92054 -11.46255 -11.09266 -11.04459 -10.75042 -10.60057 -10.48541 -10.32989 -10.16693 -10.07800 -9.77959 -9.71496 -9.65083 -9.03427 -8.52371 -8.51884 -7.87909 -6.68704 -5.79915 -3.21012 1.69623 2.12988 2.29083 2.73570 2.99656 3.36393 3.42100 3.43058 3.91948 4.12123 4.26565 4.37134 4.41437 4.48670 4.50417 4.63818 4.86893 4.98417 5.03639 5.19199 5.20257 5.21020 5.25731 5.37153 5.39095 5.49599 5.51359 5.64529 5.70110 5.84695 5.90930 5.97983 6.02344 6.07890 6.16145 6.19409 6.30347 6.49762 6.55733 6.66034 6.83963 6.92647 6.98247 7.21579 7.54037 7.60589 7.66602 7.72798 7.79335 7.91882 8.41540 9.19429 9.82690 10.41532 11.29011 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.027174 B = 0.002071 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.159807 B =13516.729689 C =13786.399456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.219 3.781 3 N -0.492 5.492 4 C -0.025 4.025 5 C -0.052 4.052 6 N -0.444 5.444 7 C 0.087 3.913 8 C 0.492 3.508 9 O -0.509 6.509 10 N -0.611 5.611 11 C 0.072 3.928 12 C 0.118 3.882 13 C 0.045 3.955 14 N -0.530 5.530 15 C 0.032 3.968 16 C 0.178 3.822 17 N -0.595 5.595 18 C -0.252 4.252 19 H 0.065 0.935 20 C 0.001 3.999 21 N -0.904 5.904 22 Si 0.903 3.097 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.282 1.282 26 C 0.148 3.852 27 C 0.048 3.952 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.070 0.930 31 H 0.170 0.830 32 H 0.172 0.828 33 H 0.122 0.878 34 H 0.120 0.880 35 H 0.063 0.937 36 H 0.079 0.921 37 H 0.069 0.931 38 H 0.083 0.917 39 H 0.095 0.905 40 H 0.068 0.932 41 H 0.025 0.975 42 H 0.024 0.976 43 H 0.060 0.940 44 H 0.027 0.973 45 H 0.089 0.911 46 H 0.254 0.746 47 H 0.026 0.974 48 H 0.056 0.944 49 H 0.061 0.939 50 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.784 9.280 23.658 25.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.043 4.043 3 N -0.211 5.211 4 C -0.172 4.172 5 C -0.184 4.184 6 N -0.128 5.128 7 C -0.040 4.040 8 C 0.277 3.723 9 O -0.383 6.383 10 N -0.346 5.346 11 C -0.072 4.072 12 C -0.004 4.004 13 C -0.084 4.084 14 N -0.255 5.255 15 C -0.097 4.097 16 C 0.052 3.948 17 N -0.319 5.319 18 C -0.382 4.382 19 H 0.083 0.917 20 C -0.198 4.198 21 N -0.548 5.548 22 Si 0.733 3.267 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.209 1.209 26 C 0.022 3.978 27 C -0.082 4.082 28 H 0.098 0.902 29 H 0.111 0.889 30 H 0.089 0.911 31 H 0.187 0.813 32 H 0.190 0.810 33 H 0.139 0.861 34 H 0.138 0.862 35 H 0.082 0.918 36 H 0.098 0.902 37 H 0.088 0.912 38 H 0.101 0.899 39 H 0.113 0.887 40 H 0.087 0.913 41 H 0.043 0.957 42 H 0.043 0.957 43 H 0.079 0.921 44 H 0.045 0.955 45 H 0.107 0.893 46 H 0.064 0.936 47 H 0.044 0.956 48 H 0.074 0.926 49 H 0.079 0.921 50 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 2.186 10.690 22.816 25.291 hybrid contribution 0.878 -2.696 0.109 2.838 sum 3.065 7.994 22.925 24.471 Atomic orbital electron populations 1.20181 0.85131 1.04317 1.03098 1.23249 0.95624 0.81117 1.04300 1.70247 1.02341 1.28026 1.20494 1.22233 0.94775 0.92679 1.07537 1.22631 0.86623 0.97007 1.12100 1.44870 1.06864 1.05789 1.55238 1.21722 1.03964 0.81926 0.96378 1.20710 0.78282 0.82281 0.91063 1.90838 1.49932 1.52304 1.45217 1.47866 1.66657 1.11584 1.08519 1.21919 1.01694 0.94485 0.89068 1.21586 0.97499 1.01163 0.80154 1.22340 0.97358 0.98539 0.90213 1.61878 1.12909 1.38016 1.12702 1.22980 0.94291 0.90360 1.02019 1.20864 0.88703 1.00549 0.84704 1.44117 1.15278 1.21365 1.51118 1.19153 0.92747 1.01824 1.24444 0.91695 1.25029 0.96595 0.99238 0.98917 1.70021 1.00121 1.35673 1.49004 0.86358 0.76736 0.84860 0.78737 1.21162 1.21601 1.20872 1.20977 0.92597 0.92724 0.91529 1.22600 0.90080 0.97837 0.97661 0.90212 0.88942 0.91144 0.81294 0.81033 0.86051 0.86165 0.91838 0.90208 0.91220 0.89888 0.88710 0.91300 0.95670 0.95727 0.92126 0.95504 0.89326 0.93557 0.95561 0.92570 0.92076 0.95496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.56 10.04 36.00 0.36 -0.20 16 2 C 0.22 2.53 7.88 -155.42 -1.23 1.31 16 3 N -0.49 -6.67 11.25 -10.82 -0.12 -6.79 16 4 C -0.03 -0.29 11.87 -17.81 -0.21 -0.50 16 5 C -0.05 -0.52 11.58 -16.56 -0.19 -0.71 16 6 N -0.44 -4.44 2.24 -115.19 -0.26 -4.70 16 7 C 0.09 0.58 4.71 -5.20 -0.02 0.55 16 8 C 0.49 5.13 7.74 -10.98 -0.09 5.05 16 9 O -0.51 -7.98 15.99 5.56 0.09 -7.89 16 10 N -0.61 -5.54 2.87 -181.57 -0.52 -6.06 16 11 C 0.07 0.34 10.24 59.85 0.61 0.95 16 12 C 0.12 1.43 5.34 -4.04 -0.02 1.41 16 13 C 0.05 0.64 5.29 -3.82 -0.02 0.62 16 14 N -0.53 -9.40 4.63 -234.32 -1.08 -10.49 16 15 C 0.03 0.61 5.46 -3.70 -0.02 0.59 16 16 C 0.18 4.25 5.42 -3.60 -0.02 4.23 16 17 N -0.60 -15.15 3.04 -172.01 -0.52 -15.67 16 18 C -0.25 -6.94 9.63 -15.06 -0.15 -7.09 16 19 H 0.07 1.75 7.88 -52.48 -0.41 1.34 16 20 C 0.00 0.02 4.94 -17.43 -0.09 -0.07 16 21 N -0.90 -26.14 11.15 55.49 0.62 -25.52 16 22 Si 0.90 21.56 29.59 -169.99 -5.03 16.53 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 26 C 0.15 3.22 6.69 -3.60 -0.02 3.20 16 27 C 0.05 0.87 5.62 -3.70 -0.02 0.85 16 28 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.09 0.77 8.14 -51.92 -0.42 0.35 16 30 H 0.07 0.53 7.84 -51.93 -0.41 0.13 16 31 H 0.17 1.50 8.06 -52.49 -0.42 1.08 16 32 H 0.17 1.20 8.06 -52.49 -0.42 0.78 16 33 H 0.12 0.46 7.40 -51.93 -0.38 0.08 16 34 H 0.12 0.45 7.91 -51.92 -0.41 0.04 16 35 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 36 H 0.08 0.40 8.07 -51.93 -0.42 -0.02 16 37 H 0.07 0.16 6.44 -51.93 -0.33 -0.18 16 38 H 0.08 0.93 6.33 -51.93 -0.33 0.60 16 39 H 0.09 1.40 7.42 -51.93 -0.39 1.02 16 40 H 0.07 1.04 7.97 -51.93 -0.41 0.63 16 41 H 0.03 0.34 8.12 -51.93 -0.42 -0.08 16 42 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.99 6.16 -51.93 -0.32 0.67 16 44 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.09 2.33 6.12 -51.93 -0.32 2.01 16 46 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 47 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 48 H 0.06 1.17 7.96 -51.93 -0.41 0.75 16 49 H 0.06 1.00 7.99 -51.93 -0.41 0.59 16 50 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 399.56 15.07 6.02 6.02 Total: -1.00 -36.34 399.56 -10.26 -46.60 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -8.32 Total: -2.21 kcal Atomic # 6 Polarization: 11.30 SS G_CDS: -1.12 Total: 10.18 kcal Atomic # 7 Polarization: -67.34 SS G_CDS: -1.89 Total: -69.23 kcal Atomic # 8 Polarization: -7.98 SS G_CDS: 0.09 Total: -7.89 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.53 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -36.34 -10.26 -46.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567720913.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.312 kcal (2) G-P(sol) polarization free energy of solvation -36.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds