Wall clock time and date at job start Tue Mar 31 2020 18:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30499 * 125.65339 * 2 1 4 4 C 1.34125 * 109.25942 * 180.28718 * 3 2 1 5 5 C 1.34667 * 108.01813 * 359.72677 * 4 3 2 6 6 N 1.35044 * 125.64785 * 179.81733 * 2 1 3 7 7 C 1.46494 * 126.40128 * 359.97438 * 6 2 1 8 8 C 1.50702 * 109.47427 * 84.70730 * 7 6 2 9 9 O 1.21283 * 119.99758 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00293 * 180.02562 * 8 7 6 11 11 C 1.46501 * 119.99880 * 0.02562 * 10 8 7 12 12 C 1.46500 * 119.99975 * 180.02562 * 10 8 7 13 13 C 1.52998 * 109.47391 * 89.99940 * 12 10 8 14 14 N 1.46903 * 109.46998 * 180.02562 * 13 12 10 15 15 C 1.46897 * 110.99541 * 294.29743 * 14 13 12 16 16 C 1.53241 * 109.34066 * 172.74984 * 15 14 13 17 17 N 1.47084 * 108.52071 * 53.82818 * 16 15 14 18 18 C 1.36931 * 120.88049 * 128.84121 * 17 16 15 19 19 H 1.08004 * 120.00011 * 206.56822 * 18 17 16 20 20 C 1.38810 * 120.00151 * 26.56586 * 18 17 16 21 21 N 1.31625 * 120.00056 * 17.01639 * 20 18 17 22 22 Si 1.86801 * 120.00026 * 197.01665 * 20 18 17 23 23 H 1.48503 * 109.47053 * 59.99951 * 22 20 18 24 24 H 1.48503 * 109.47100 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47082 * 299.99831 * 22 20 18 26 26 C 1.47087 * 118.23637 * 308.81741 * 17 16 15 27 27 C 1.46900 * 110.99679 * 169.99865 * 14 13 12 28 28 H 1.08997 * 109.47919 * 270.17871 * 1 2 3 29 29 H 1.09007 * 109.46966 * 30.18147 * 1 2 3 30 30 H 1.09001 * 109.47202 * 150.17364 * 1 2 3 31 31 H 1.07993 * 125.99192 * 179.72428 * 4 3 2 32 32 H 1.08002 * 126.59147 * 179.97438 * 5 4 3 33 33 H 1.09002 * 109.47693 * 204.71241 * 7 6 2 34 34 H 1.09007 * 109.47075 * 324.70901 * 7 6 2 35 35 H 1.09002 * 109.46888 * 89.99946 * 11 10 8 36 36 H 1.08999 * 109.47312 * 210.00208 * 11 10 8 37 37 H 1.08997 * 109.47226 * 330.00478 * 11 10 8 38 38 H 1.09002 * 109.46687 * 209.99896 * 12 10 8 39 39 H 1.09001 * 109.47010 * 329.99648 * 12 10 8 40 40 H 1.09002 * 109.47169 * 299.99660 * 13 12 10 41 41 H 1.09001 * 109.47282 * 59.99875 * 13 12 10 42 42 H 1.08999 * 109.49753 * 292.70655 * 15 14 13 43 43 H 1.09002 * 109.49552 * 52.79279 * 15 14 13 44 44 H 1.09005 * 109.62753 * 294.12430 * 16 15 14 45 45 H 1.08991 * 109.63698 * 173.54131 * 16 15 14 46 46 H 0.96993 * 120.00014 * 180.02562 * 21 20 18 47 47 H 1.08994 * 109.63144 * 291.47401 * 26 17 16 48 48 H 1.09004 * 109.78362 * 170.98593 * 26 17 16 49 49 H 1.08996 * 109.49327 * 307.20921 * 27 14 13 50 50 H 1.09001 * 109.49446 * 67.29250 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2676 1.0604 0.0000 4 6 3.5543 0.6818 -0.0063 5 6 3.5925 -0.6643 -0.0043 6 7 2.2940 -1.0974 0.0035 7 6 1.8425 -2.4910 0.0085 8 6 1.5625 -2.9334 -1.4047 9 8 1.7246 -2.1608 -2.3254 10 7 1.1319 -4.1877 -1.6454 11 6 0.9355 -5.1208 -0.5332 12 6 0.8602 -4.6179 -3.0192 13 6 2.1318 -5.2115 -3.6287 14 7 1.8594 -5.6423 -5.0064 15 6 0.8999 -6.7543 -5.0302 16 6 0.5053 -7.0532 -6.4805 17 7 1.7314 -7.2729 -7.2625 18 6 1.8749 -8.3864 -8.0465 19 1 2.8608 -8.7698 -8.2647 20 6 0.7534 -9.0225 -8.5607 21 7 -0.4037 -8.3958 -8.5886 22 14 0.8863 -10.7678 -9.2130 23 1 1.3428 -11.6695 -8.1249 24 1 -0.4424 -11.2161 -9.7019 25 1 1.8639 -10.8056 -10.3301 26 6 2.7992 -6.2646 -7.1806 27 6 3.1034 -5.9969 -5.7027 28 1 -0.3635 0.0032 1.0276 29 1 -0.3633 0.8884 -0.5167 30 1 -0.3634 -0.8915 -0.5111 31 1 4.4097 1.3410 -0.0121 32 1 4.4775 -1.2833 -0.0085 33 1 2.6187 -3.1230 0.4400 34 1 0.9327 -2.5761 0.6028 35 1 -0.0865 -5.0360 -0.1639 36 1 1.1141 -6.1394 -0.8776 37 1 1.6328 -4.8812 0.2696 38 1 0.0731 -5.3720 -3.0148 39 1 0.5391 -3.7610 -3.6114 40 1 2.9189 -4.4574 -3.6331 41 1 2.4529 -6.0684 -3.0364 42 1 1.3575 -7.6393 -4.5882 43 1 0.0117 -6.4806 -4.4607 44 1 -0.0448 -6.2069 -6.8921 45 1 -0.1157 -7.9482 -6.5141 46 1 -1.1875 -8.8403 -8.9476 47 1 2.4696 -5.3426 -7.6594 48 1 3.6956 -6.6353 -7.6777 49 1 3.8133 -5.1739 -5.6208 50 1 3.5304 -6.8924 -5.2512 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567720913.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:41 Heat of formation + Delta-G solvation = 51.999980 kcal Electronic energy + Delta-G solvation = -29271.580415 eV Core-core repulsion = 25335.507415 eV Total energy + Delta-G solvation = -3936.073000 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.10893 -40.99034 -39.70459 -37.15031 -35.99840 -35.03612 -33.44840 -32.63885 -31.68475 -31.08719 -29.02891 -28.07065 -27.69040 -26.84344 -25.06022 -24.29188 -23.06585 -22.33671 -21.22926 -20.87192 -20.10158 -18.80141 -18.46951 -18.17198 -17.34807 -16.86099 -16.76448 -16.23956 -16.08371 -15.73078 -15.44452 -15.35187 -15.18718 -15.05646 -14.86330 -14.59886 -14.39814 -14.13417 -13.91670 -13.91134 -13.48320 -13.37835 -13.25123 -13.23147 -13.18067 -13.01248 -12.89170 -12.60769 -12.47204 -12.18721 -12.04795 -11.86255 -11.60320 -11.44941 -11.40200 -10.98130 -10.59986 -10.47812 -9.82821 -9.29491 -9.27016 -8.70911 -7.89042 -5.34230 0.95501 1.40472 1.46598 1.48284 1.55776 1.65242 2.04263 2.18912 2.49897 3.00793 3.26142 3.36396 3.60251 3.64305 3.71034 3.85392 3.91458 4.04429 4.05686 4.21610 4.29921 4.32561 4.41625 4.42295 4.50905 4.55537 4.57876 4.65645 4.68363 4.69806 4.76816 4.83482 4.84954 4.93734 4.96237 5.00653 5.01570 5.15624 5.29416 5.33274 5.37543 5.59226 5.66663 5.83176 6.10951 6.13883 6.21766 6.31899 6.35668 6.99941 7.11554 7.14599 7.81301 8.36266 9.17843 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.027174 B = 0.002071 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.159807 B =13516.729689 C =13786.399456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.202 3.798 3 N -0.537 5.537 4 C -0.057 4.057 5 C -0.049 4.049 6 N -0.446 5.446 7 C 0.090 3.910 8 C 0.489 3.511 9 O -0.573 6.573 10 N -0.605 5.605 11 C 0.062 3.938 12 C 0.126 3.874 13 C 0.056 3.944 14 N -0.546 5.546 15 C 0.052 3.948 16 C 0.183 3.817 17 N -0.614 5.614 18 C -0.266 4.266 19 H 0.067 0.933 20 C -0.052 4.052 21 N -0.936 5.936 22 Si 0.971 3.029 23 H -0.276 1.276 24 H -0.293 1.293 25 H -0.277 1.277 26 C 0.144 3.856 27 C 0.060 3.940 28 H 0.106 0.894 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.181 0.819 32 H 0.202 0.798 33 H 0.160 0.840 34 H 0.157 0.843 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.103 0.897 38 H 0.095 0.905 39 H 0.062 0.938 40 H 0.059 0.941 41 H 0.043 0.957 42 H 0.025 0.975 43 H 0.088 0.912 44 H -0.005 1.005 45 H 0.061 0.939 46 H 0.251 0.749 47 H 0.010 0.990 48 H 0.061 0.939 49 H 0.083 0.917 50 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.486 7.625 26.605 27.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.061 4.061 3 N -0.257 5.257 4 C -0.203 4.203 5 C -0.181 4.181 6 N -0.129 5.129 7 C -0.035 4.035 8 C 0.276 3.724 9 O -0.451 6.451 10 N -0.338 5.338 11 C -0.079 4.079 12 C 0.002 3.998 13 C -0.073 4.073 14 N -0.272 5.272 15 C -0.077 4.077 16 C 0.058 3.942 17 N -0.338 5.338 18 C -0.396 4.396 19 H 0.085 0.915 20 C -0.247 4.247 21 N -0.582 5.582 22 Si 0.799 3.201 23 H -0.202 1.202 24 H -0.219 1.219 25 H -0.203 1.203 26 C 0.018 3.982 27 C -0.070 4.070 28 H 0.124 0.876 29 H 0.101 0.899 30 H 0.094 0.906 31 H 0.198 0.802 32 H 0.218 0.782 33 H 0.178 0.822 34 H 0.174 0.826 35 H 0.101 0.899 36 H 0.099 0.901 37 H 0.121 0.879 38 H 0.113 0.887 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.061 0.939 42 H 0.043 0.957 43 H 0.106 0.894 44 H 0.013 0.987 45 H 0.079 0.921 46 H 0.060 0.940 47 H 0.028 0.972 48 H 0.080 0.920 49 H 0.101 0.899 50 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 2.904 9.010 25.819 27.500 hybrid contribution 0.681 -2.138 -0.835 2.394 sum 3.585 6.872 24.985 26.160 Atomic orbital electron populations 1.20267 0.83371 1.04092 1.04713 1.23789 0.96846 0.81434 1.04028 1.70184 1.03563 1.29842 1.22094 1.22635 0.94749 0.94089 1.08834 1.23118 0.87663 0.96888 1.10430 1.45058 1.06599 1.06823 1.54412 1.22069 1.06913 0.80516 0.94043 1.21393 0.77002 0.81905 0.92051 1.90824 1.52775 1.54089 1.47412 1.47912 1.65637 1.12024 1.08251 1.22285 1.03977 0.93431 0.88237 1.21296 0.96722 0.99965 0.81808 1.22274 0.98120 0.98709 0.88167 1.61784 1.12602 1.37395 1.15382 1.22638 0.95742 0.90927 0.98368 1.20659 0.87956 0.97907 0.87721 1.44417 1.16270 1.21815 1.51336 1.19496 0.92963 1.02677 1.24488 0.91508 1.25827 0.96274 1.02958 0.99637 1.70190 1.00679 1.37111 1.50183 0.85290 0.76442 0.80110 0.78271 1.20202 1.21902 1.20275 1.21103 0.91715 0.91144 0.94247 1.22396 0.90729 0.98756 0.95079 0.87562 0.89936 0.90567 0.80169 0.78152 0.82231 0.82580 0.89890 0.90145 0.87899 0.88701 0.91947 0.92196 0.93861 0.95653 0.89400 0.98724 0.92103 0.93973 0.97185 0.92050 0.89915 0.95270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.00 10.04 71.23 0.72 -0.28 16 2 C 0.20 4.49 7.88 138.13 1.09 5.58 16 3 N -0.54 -14.72 11.25 -188.15 -2.12 -16.83 16 4 C -0.06 -1.30 11.87 83.52 0.99 -0.31 16 5 C -0.05 -0.90 11.58 83.09 0.96 0.06 16 6 N -0.45 -7.95 2.24 -518.34 -1.16 -9.11 16 7 C 0.09 0.83 4.71 85.63 0.40 1.23 16 8 C 0.49 9.01 7.74 87.66 0.68 9.69 16 9 O -0.57 -17.74 15.99 -3.04 -0.05 -17.79 16 10 N -0.61 -9.07 2.87 -846.75 -2.43 -11.51 16 11 C 0.06 0.28 10.24 127.77 1.31 1.59 16 12 C 0.13 2.82 5.34 86.38 0.46 3.28 16 13 C 0.06 1.47 5.29 86.30 0.46 1.92 16 14 N -0.55 -18.78 4.63 -895.24 -4.15 -22.92 16 15 C 0.05 1.91 5.46 86.38 0.47 2.38 16 16 C 0.18 8.98 5.42 86.35 0.47 9.45 16 17 N -0.61 -31.79 3.04 -698.10 -2.12 -33.91 16 18 C -0.27 -14.83 9.63 84.03 0.81 -14.02 16 19 H 0.07 3.61 7.88 -2.91 -0.02 3.59 16 20 C -0.05 -2.89 4.94 84.86 0.42 -2.47 16 21 N -0.94 -55.57 11.15 21.65 0.24 -55.33 16 22 Si 0.97 44.61 29.59 68.60 2.03 46.64 16 23 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 24 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 25 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 26 C 0.14 6.29 6.69 86.35 0.58 6.86 16 27 C 0.06 2.12 5.62 86.38 0.49 2.60 16 28 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 30 H 0.08 1.03 7.84 -2.39 -0.02 1.01 16 31 H 0.18 3.28 8.06 -2.91 -0.02 3.25 16 32 H 0.20 2.24 8.06 -2.91 -0.02 2.22 16 33 H 0.16 0.27 7.40 -2.39 -0.02 0.26 16 34 H 0.16 0.34 7.91 -2.38 -0.02 0.32 16 35 H 0.08 0.13 8.14 -2.39 -0.02 0.11 16 36 H 0.08 0.43 8.07 -2.39 -0.02 0.41 16 37 H 0.10 -0.18 6.44 -2.39 -0.02 -0.19 16 38 H 0.09 1.89 6.33 -2.39 -0.02 1.87 16 39 H 0.06 1.84 7.42 -2.39 -0.02 1.82 16 40 H 0.06 1.70 7.97 -2.39 -0.02 1.68 16 41 H 0.04 1.00 8.12 -2.39 -0.02 0.98 16 42 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.09 2.71 6.16 -2.39 -0.01 2.70 16 44 H -0.01 -0.29 8.14 -2.38 -0.02 -0.31 16 45 H 0.06 3.29 6.12 -2.39 -0.01 3.28 16 46 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 47 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 48 H 0.06 2.55 7.96 -2.38 -0.02 2.54 16 49 H 0.08 2.58 7.99 -2.39 -0.02 2.56 16 50 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -84.14 399.56 1.45 -82.68 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: 0.92 Total: 10.52 kcal Atomic # 6 Polarization: 17.27 SS G_CDS: 10.30 Total: 27.57 kcal Atomic # 7 Polarization: -137.88 SS G_CDS: -11.74 Total: -149.62 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: -0.05 Total: -17.79 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -84.14 1.45 -82.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567720913.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.683 kcal (2) G-P(sol) polarization free energy of solvation -84.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds