Wall clock time and date at job start Tue Mar 31 2020 18:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36596 * 126.58117 * 2 1 4 4 C 1.47523 * 125.77085 * 359.97438 * 3 2 1 5 5 O 1.21595 * 120.00045 * 354.19878 * 4 3 2 6 6 N 1.34779 * 119.99976 * 174.19348 * 4 3 2 7 7 C 1.46923 * 120.62891 * 3.35232 * 6 4 3 8 8 C 1.52769 * 109.00903 * 233.58187 * 7 6 4 9 9 C 1.53037 * 109.38023 * 305.59224 * 8 7 6 10 10 C 1.53037 * 109.54041 * 61.23839 * 9 8 7 11 11 C 1.46917 * 120.62936 * 183.63130 * 6 4 3 12 12 H 1.09003 * 109.58920 * 246.15553 * 11 6 4 13 13 C 1.53002 * 109.58941 * 6.44154 * 11 6 4 14 14 N 1.46505 * 109.46964 * 287.76821 * 13 11 6 15 15 C 1.36937 * 119.99883 * 175.28570 * 14 13 11 16 16 H 1.08001 * 120.00130 * 0.02562 * 15 14 13 17 17 C 1.38809 * 119.99701 * 180.02562 * 15 14 13 18 18 N 1.31615 * 120.00276 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99897 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46804 * 59.99737 * 19 17 15 21 21 H 1.48493 * 109.47107 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47062 * 300.00132 * 19 17 15 23 23 N 1.34403 * 108.45595 * 179.97438 * 3 2 1 24 24 N 1.28760 * 109.52465 * 359.76026 * 23 3 2 25 25 N 1.34811 * 126.57791 * 179.97438 * 2 1 3 26 26 C 1.46503 * 126.59465 * 359.97438 * 25 2 1 27 27 C 1.53001 * 109.47265 * 240.00550 * 26 25 2 28 28 C 1.53005 * 109.46805 * 120.00961 * 26 25 2 29 29 H 1.08998 * 109.46568 * 270.03919 * 1 2 3 30 30 H 1.09004 * 109.47074 * 30.03039 * 1 2 3 31 31 H 1.08997 * 109.47349 * 150.03844 * 1 2 3 32 32 H 1.08996 * 109.59057 * 353.41564 * 7 6 4 33 33 H 1.09002 * 109.58631 * 113.84431 * 7 6 4 34 34 H 1.08997 * 109.56513 * 185.55004 * 8 7 6 35 35 H 1.09004 * 109.35702 * 65.50141 * 8 7 6 36 36 H 1.09001 * 109.46236 * 301.21570 * 9 8 7 37 37 H 1.09003 * 109.44394 * 181.25546 * 9 8 7 38 38 H 1.08998 * 109.49518 * 178.68197 * 10 9 8 39 39 H 1.09000 * 109.52277 * 58.60086 * 10 9 8 40 40 H 1.08998 * 109.47304 * 47.77189 * 13 11 6 41 41 H 1.08999 * 109.47260 * 167.77153 * 13 11 6 42 42 H 0.96996 * 119.99835 * 355.28926 * 14 13 11 43 43 H 0.97002 * 120.00515 * 180.02562 * 18 17 15 44 44 H 1.08996 * 109.47212 * 0.02562 * 26 25 2 45 45 H 1.08996 * 109.47103 * 60.00370 * 27 26 25 46 46 H 1.09005 * 109.47253 * 300.00291 * 27 26 25 47 47 H 1.08994 * 109.47126 * 180.02562 * 27 26 25 48 48 H 1.08997 * 109.47033 * 180.02562 * 28 26 25 49 49 H 1.09000 * 109.46559 * 300.00226 * 28 26 25 50 50 H 1.08996 * 109.47497 * 59.99854 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3211 1.0969 0.0000 4 6 1.8738 2.5027 -0.0005 5 8 0.6912 2.7644 -0.1075 6 7 2.7761 3.4969 0.1176 7 6 4.2139 3.2002 0.1741 8 6 4.8089 3.8562 1.4188 9 6 4.4746 5.3496 1.4148 10 6 2.9557 5.5342 1.4485 11 6 2.3401 4.8976 0.1985 12 1 2.6745 5.4362 -0.6882 13 6 0.8138 4.9554 0.2886 14 7 0.2344 4.6053 -1.0106 15 6 -1.1237 4.4950 -1.1472 16 1 -1.7676 4.6666 -0.2973 17 6 -1.6727 4.1628 -2.3781 18 7 -0.8879 3.9532 -3.4137 19 14 -3.5253 4.0130 -2.5647 20 1 -4.1634 5.3104 -2.2257 21 1 -3.8540 3.6518 -3.9670 22 1 -4.0313 2.9586 -1.6497 23 7 3.5984 0.6788 0.0006 24 7 3.6299 -0.6084 0.0060 25 7 2.3104 -1.0826 0.0005 26 6 1.8863 -2.4849 0.0016 27 6 2.4293 -3.1810 1.2512 28 6 2.4288 -3.1828 -1.2472 29 1 -0.3632 0.0007 1.0277 30 1 -0.3633 0.8897 -0.5143 31 1 -0.3634 -0.8903 -0.5132 32 1 4.3627 2.1216 0.2247 33 1 4.7042 3.5975 -0.7147 34 1 5.8910 3.7255 1.4185 35 1 4.3862 3.3911 2.3094 36 1 4.8763 5.8093 0.5118 37 1 4.9175 5.8230 2.2911 38 1 2.7190 6.5980 1.4693 39 1 2.5501 5.0538 2.3389 40 1 0.4674 4.2493 1.0432 41 1 0.5041 5.9633 0.5648 42 1 0.8127 4.4515 -1.7740 43 1 -1.2715 3.7213 -4.2740 44 1 0.7975 -2.5352 0.0016 45 1 2.0429 -2.6839 2.1409 46 1 3.5182 -3.1307 1.2510 47 1 2.1142 -4.2243 1.2519 48 1 2.1129 -4.2259 -1.2466 49 1 2.0419 -2.6868 -2.1374 50 1 3.5176 -3.1325 -1.2476 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570091819.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:14 Heat of formation + Delta-G solvation = 116.872709 kcal Electronic energy + Delta-G solvation = -31287.244158 eV Core-core repulsion = 27353.984251 eV Total energy + Delta-G solvation = -3933.259907 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.09412 -39.67389 -36.75042 -36.48899 -34.35619 -32.96732 -32.31035 -31.88265 -30.49046 -29.65690 -27.66874 -27.61778 -25.92987 -24.31561 -23.90830 -22.88138 -22.45745 -20.97906 -20.28281 -20.07259 -18.73416 -17.20159 -16.63320 -16.03274 -15.96157 -15.30780 -14.77941 -14.71148 -14.52332 -14.33720 -13.83437 -13.74138 -13.49352 -13.39500 -13.30332 -13.03119 -12.84786 -12.81111 -12.61262 -12.48000 -12.46163 -12.03757 -12.01308 -11.83403 -11.70888 -11.54158 -11.36111 -11.11200 -10.78336 -10.72147 -10.64278 -10.60144 -10.24067 -10.04702 -9.83070 -9.57962 -9.43801 -8.83650 -8.53206 -8.36720 -7.83877 -6.41478 -5.47384 -2.66627 1.38434 2.11692 2.13718 3.55503 3.57224 3.61110 3.62225 4.02420 4.15132 4.41887 4.49457 4.61998 4.78406 4.82646 4.99594 5.06959 5.13170 5.13658 5.16427 5.24814 5.28103 5.35561 5.41356 5.48301 5.64966 5.68089 5.69918 5.78168 5.79562 5.82231 5.88645 5.93381 5.99447 6.06953 6.13855 6.20934 6.27568 6.31682 6.33342 6.51544 6.64844 6.70070 6.72204 6.89391 7.07412 7.43514 7.93171 8.08041 8.27879 8.70019 9.07211 9.81329 10.42196 10.77491 11.76690 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.008366 B = 0.005391 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3346.152432 B = 5192.875404 C = 7949.882284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.120 3.880 3 C -0.084 4.084 4 C 0.558 3.442 5 O -0.435 6.435 6 N -0.599 5.599 7 C 0.072 3.928 8 C -0.129 4.129 9 C -0.119 4.119 10 C -0.126 4.126 11 C 0.142 3.858 12 H 0.067 0.933 13 C 0.161 3.839 14 N -0.694 5.694 15 C -0.194 4.194 16 H 0.063 0.937 17 C -0.024 4.024 18 N -0.941 5.941 19 Si 0.897 3.103 20 H -0.291 1.291 21 H -0.296 1.296 22 H -0.291 1.291 23 N -0.214 5.214 24 N -0.082 5.082 25 N -0.358 5.358 26 C 0.144 3.856 27 C -0.160 4.160 28 C -0.162 4.162 29 H 0.085 0.915 30 H 0.128 0.872 31 H 0.068 0.932 32 H 0.140 0.860 33 H 0.054 0.946 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.057 0.943 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.042 0.958 41 H 0.011 0.989 42 H 0.379 0.621 43 H 0.248 0.752 44 H 0.108 0.892 45 H 0.063 0.937 46 H 0.073 0.927 47 H 0.079 0.921 48 H 0.079 0.921 49 H 0.065 0.935 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.637 -11.794 10.754 19.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.016 4.016 3 C -0.223 4.223 4 C 0.341 3.659 5 O -0.302 6.302 6 N -0.335 5.335 7 C -0.053 4.053 8 C -0.168 4.168 9 C -0.156 4.156 10 C -0.165 4.165 11 C 0.039 3.961 12 H 0.085 0.915 13 C 0.034 3.966 14 N -0.337 5.337 15 C -0.326 4.326 16 H 0.081 0.919 17 C -0.218 4.218 18 N -0.592 5.592 19 Si 0.730 3.270 20 H -0.218 1.218 21 H -0.222 1.222 22 H -0.218 1.218 23 N -0.085 5.085 24 N -0.060 5.060 25 N -0.147 5.147 26 C 0.043 3.957 27 C -0.218 4.218 28 C -0.220 4.220 29 H 0.103 0.897 30 H 0.146 0.854 31 H 0.086 0.914 32 H 0.157 0.843 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.060 0.940 41 H 0.028 0.972 42 H 0.213 0.787 43 H 0.058 0.942 44 H 0.126 0.874 45 H 0.082 0.918 46 H 0.092 0.908 47 H 0.098 0.902 48 H 0.098 0.902 49 H 0.084 0.916 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 11.221 -12.111 10.718 19.684 hybrid contribution -1.623 -0.092 -0.508 1.703 sum 9.598 -12.203 10.210 18.582 Atomic orbital electron populations 1.20794 0.84696 1.06213 1.04136 1.21923 0.96257 0.86120 0.97300 1.21676 0.88212 0.96390 1.16064 1.16986 0.86641 0.81900 0.80370 1.91297 1.14837 1.80396 1.43699 1.47565 1.06019 1.05495 1.74443 1.22586 0.80294 1.05814 0.96574 1.21795 1.00174 0.95750 0.99056 1.21522 0.96124 0.96460 1.01517 1.21893 0.95266 1.00781 0.98517 1.21473 0.96779 0.80882 0.96948 0.91463 1.20864 0.87806 0.96240 0.91718 1.42210 1.04239 1.81749 1.05472 1.19055 0.83278 1.36176 0.94105 0.91909 1.24554 0.96642 1.04370 0.96225 1.69648 1.32828 1.56473 1.00285 0.86387 0.86799 0.77605 0.76203 1.21822 1.22192 1.21820 1.73976 1.19236 1.03421 1.11910 1.81808 0.96727 1.04003 1.23440 1.50475 1.06274 1.06972 1.50957 1.21568 1.00504 0.75695 0.97959 1.22134 1.03020 1.00681 0.95976 1.22151 1.03029 1.00681 0.96171 0.89671 0.85419 0.91361 0.84331 0.92807 0.91526 0.92180 0.92016 0.92390 0.91055 0.91752 0.94030 0.97177 0.78726 0.94171 0.87404 0.91821 0.90840 0.90182 0.90179 0.91584 0.90838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.45 9.48 36.01 0.34 -1.11 16 2 C 0.12 1.90 7.02 -81.88 -0.57 1.33 16 3 C -0.08 -1.51 6.77 -83.55 -0.57 -2.08 16 4 C 0.56 11.25 7.42 -12.47 -0.09 11.16 16 5 O -0.44 -10.11 8.07 5.28 0.04 -10.07 16 6 N -0.60 -10.78 2.98 -166.70 -0.50 -11.28 16 7 C 0.07 1.09 6.28 -3.93 -0.02 1.06 16 8 C -0.13 -1.63 6.07 -26.83 -0.16 -1.79 16 9 C -0.12 -1.44 5.88 -26.69 -0.16 -1.59 16 10 C -0.13 -1.77 5.35 -26.61 -0.14 -1.91 16 11 C 0.14 2.55 2.91 -67.60 -0.20 2.35 16 12 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 13 C 0.16 3.49 4.90 -4.04 -0.02 3.47 16 14 N -0.69 -18.32 3.27 -59.91 -0.20 -18.52 16 15 C -0.19 -5.60 9.17 -15.06 -0.14 -5.73 16 16 H 0.06 1.79 7.83 -52.49 -0.41 1.38 16 17 C -0.02 -0.71 5.50 -17.43 -0.10 -0.81 16 18 N -0.94 -29.52 13.06 55.49 0.72 -28.80 16 19 Si 0.90 23.22 29.55 -169.99 -5.02 18.19 16 20 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 21 H -0.30 -7.74 7.11 56.52 0.40 -7.34 16 22 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 23 N -0.21 -3.61 8.63 32.85 0.28 -3.33 16 24 N -0.08 -1.27 13.67 60.35 0.82 -0.44 16 25 N -0.36 -4.83 3.28 -50.40 -0.17 -4.99 16 26 C 0.14 1.31 3.68 -67.93 -0.25 1.06 16 27 C -0.16 -1.18 9.46 37.16 0.35 -0.83 16 28 C -0.16 -1.33 9.47 37.16 0.35 -0.97 16 29 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.13 2.43 6.33 -51.93 -0.33 2.10 16 31 H 0.07 0.79 7.18 -51.93 -0.37 0.41 16 32 H 0.14 2.21 3.62 -130.47 -0.47 1.74 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.04 0.96 6.38 -51.93 -0.33 0.63 16 41 H 0.01 0.23 8.10 -51.93 -0.42 -0.19 16 42 H 0.38 10.84 7.61 -40.82 -0.31 10.53 16 43 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 44 H 0.11 0.81 6.79 -51.93 -0.35 0.46 16 45 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 50 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 387.44 15.07 5.84 5.84 Total: -1.00 -34.02 387.44 -8.02 -42.04 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -8.48 Total: 7.73 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: -1.38 Total: 3.61 kcal Atomic # 7 Polarization: -68.33 SS G_CDS: 0.98 Total: -67.35 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.04 Total: -10.07 kcal Atomic # 14 Polarization: 23.22 SS G_CDS: -5.02 Total: 18.19 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.02 -8.02 -42.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570091819.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.914 kcal (2) G-P(sol) polarization free energy of solvation -34.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds