Wall clock time and date at job start Tue Mar 31 2020 18:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36596 * 126.58117 * 2 1 4 4 C 1.47523 * 125.77085 * 359.97438 * 3 2 1 5 5 O 1.21595 * 120.00045 * 354.19878 * 4 3 2 6 6 N 1.34779 * 119.99976 * 174.19348 * 4 3 2 7 7 C 1.46923 * 120.62891 * 3.35232 * 6 4 3 8 8 C 1.52769 * 109.00903 * 233.58187 * 7 6 4 9 9 C 1.53037 * 109.38023 * 305.59224 * 8 7 6 10 10 C 1.53037 * 109.54041 * 61.23839 * 9 8 7 11 11 C 1.46917 * 120.62936 * 183.63130 * 6 4 3 12 12 H 1.09003 * 109.58920 * 246.15553 * 11 6 4 13 13 C 1.53002 * 109.58941 * 6.44154 * 11 6 4 14 14 N 1.46505 * 109.46964 * 287.76821 * 13 11 6 15 15 C 1.36937 * 119.99883 * 175.28570 * 14 13 11 16 16 H 1.08001 * 120.00130 * 0.02562 * 15 14 13 17 17 C 1.38809 * 119.99701 * 180.02562 * 15 14 13 18 18 N 1.31615 * 120.00276 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99897 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46804 * 59.99737 * 19 17 15 21 21 H 1.48493 * 109.47107 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47062 * 300.00132 * 19 17 15 23 23 N 1.34403 * 108.45595 * 179.97438 * 3 2 1 24 24 N 1.28760 * 109.52465 * 359.76026 * 23 3 2 25 25 N 1.34811 * 126.57791 * 179.97438 * 2 1 3 26 26 C 1.46503 * 126.59465 * 359.97438 * 25 2 1 27 27 C 1.53001 * 109.47265 * 240.00550 * 26 25 2 28 28 C 1.53005 * 109.46805 * 120.00961 * 26 25 2 29 29 H 1.08998 * 109.46568 * 270.03919 * 1 2 3 30 30 H 1.09004 * 109.47074 * 30.03039 * 1 2 3 31 31 H 1.08997 * 109.47349 * 150.03844 * 1 2 3 32 32 H 1.08996 * 109.59057 * 353.41564 * 7 6 4 33 33 H 1.09002 * 109.58631 * 113.84431 * 7 6 4 34 34 H 1.08997 * 109.56513 * 185.55004 * 8 7 6 35 35 H 1.09004 * 109.35702 * 65.50141 * 8 7 6 36 36 H 1.09001 * 109.46236 * 301.21570 * 9 8 7 37 37 H 1.09003 * 109.44394 * 181.25546 * 9 8 7 38 38 H 1.08998 * 109.49518 * 178.68197 * 10 9 8 39 39 H 1.09000 * 109.52277 * 58.60086 * 10 9 8 40 40 H 1.08998 * 109.47304 * 47.77189 * 13 11 6 41 41 H 1.08999 * 109.47260 * 167.77153 * 13 11 6 42 42 H 0.96996 * 119.99835 * 355.28926 * 14 13 11 43 43 H 0.97002 * 120.00515 * 180.02562 * 18 17 15 44 44 H 1.08996 * 109.47212 * 0.02562 * 26 25 2 45 45 H 1.08996 * 109.47103 * 60.00370 * 27 26 25 46 46 H 1.09005 * 109.47253 * 300.00291 * 27 26 25 47 47 H 1.08994 * 109.47126 * 180.02562 * 27 26 25 48 48 H 1.08997 * 109.47033 * 180.02562 * 28 26 25 49 49 H 1.09000 * 109.46559 * 300.00226 * 28 26 25 50 50 H 1.08996 * 109.47497 * 59.99854 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3211 1.0969 0.0000 4 6 1.8738 2.5027 -0.0005 5 8 0.6912 2.7644 -0.1075 6 7 2.7761 3.4969 0.1176 7 6 4.2139 3.2002 0.1741 8 6 4.8089 3.8562 1.4188 9 6 4.4746 5.3496 1.4148 10 6 2.9557 5.5342 1.4485 11 6 2.3401 4.8976 0.1985 12 1 2.6745 5.4362 -0.6882 13 6 0.8138 4.9554 0.2886 14 7 0.2344 4.6053 -1.0106 15 6 -1.1237 4.4950 -1.1472 16 1 -1.7676 4.6666 -0.2973 17 6 -1.6727 4.1628 -2.3781 18 7 -0.8879 3.9532 -3.4137 19 14 -3.5253 4.0130 -2.5647 20 1 -4.1634 5.3104 -2.2257 21 1 -3.8540 3.6518 -3.9670 22 1 -4.0313 2.9586 -1.6497 23 7 3.5984 0.6788 0.0006 24 7 3.6299 -0.6084 0.0060 25 7 2.3104 -1.0826 0.0005 26 6 1.8863 -2.4849 0.0016 27 6 2.4293 -3.1810 1.2512 28 6 2.4288 -3.1828 -1.2472 29 1 -0.3632 0.0007 1.0277 30 1 -0.3633 0.8897 -0.5143 31 1 -0.3634 -0.8903 -0.5132 32 1 4.3627 2.1216 0.2247 33 1 4.7042 3.5975 -0.7147 34 1 5.8910 3.7255 1.4185 35 1 4.3862 3.3911 2.3094 36 1 4.8763 5.8093 0.5118 37 1 4.9175 5.8230 2.2911 38 1 2.7190 6.5980 1.4693 39 1 2.5501 5.0538 2.3389 40 1 0.4674 4.2493 1.0432 41 1 0.5041 5.9633 0.5648 42 1 0.8127 4.4515 -1.7740 43 1 -1.2715 3.7213 -4.2740 44 1 0.7975 -2.5352 0.0016 45 1 2.0429 -2.6839 2.1409 46 1 3.5182 -3.1307 1.2510 47 1 2.1142 -4.2243 1.2519 48 1 2.1129 -4.2259 -1.2466 49 1 2.0419 -2.6868 -2.1374 50 1 3.5176 -3.1325 -1.2476 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570091819.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:13 Heat of formation + Delta-G solvation = 94.971629 kcal Electronic energy + Delta-G solvation = -31288.193860 eV Core-core repulsion = 27353.984251 eV Total energy + Delta-G solvation = -3934.209610 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.32608 -41.11505 -38.11989 -37.42805 -36.24729 -34.08618 -33.82487 -33.46895 -31.75071 -31.34514 -28.86424 -28.28206 -27.56718 -25.85951 -25.00805 -24.21621 -24.17052 -22.41984 -21.47168 -21.15570 -20.10941 -18.93027 -18.06312 -17.29147 -17.16337 -16.71559 -16.59496 -15.97744 -15.66529 -15.58184 -15.24768 -15.12270 -14.94099 -14.82794 -14.49460 -14.31760 -14.05060 -13.99448 -13.88407 -13.62858 -13.50656 -13.19701 -13.16058 -13.15463 -12.91099 -12.73219 -12.66699 -12.53915 -12.41225 -12.13145 -12.03054 -11.92807 -11.73952 -11.67762 -11.32320 -11.11742 -10.82114 -10.76505 -10.08724 -9.93124 -9.32967 -8.53375 -7.73877 -4.92744 0.17817 0.76953 1.07810 1.48400 1.52178 1.57738 2.17733 2.53444 2.68880 3.20938 3.31483 3.59127 3.59627 3.75619 3.81355 3.87891 3.91227 3.98334 4.10012 4.15634 4.20554 4.36313 4.40553 4.51441 4.56344 4.60449 4.63068 4.65968 4.67264 4.68775 4.74383 4.82647 4.93483 5.01502 5.07119 5.14137 5.14527 5.16168 5.16927 5.20258 5.25660 5.33664 5.51635 5.53958 5.61211 5.62338 5.99288 6.45145 6.65076 6.98293 7.50808 7.57857 8.29940 8.54887 9.51118 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.008366 B = 0.005391 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3346.152432 B = 5192.875404 C = 7949.882284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.120 3.880 3 C -0.114 4.114 4 C 0.553 3.447 5 O -0.479 6.479 6 N -0.599 5.599 7 C 0.066 3.934 8 C -0.122 4.122 9 C -0.113 4.113 10 C -0.117 4.117 11 C 0.145 3.855 12 H 0.056 0.944 13 C 0.166 3.834 14 N -0.701 5.701 15 C -0.190 4.190 16 H 0.062 0.938 17 C -0.085 4.085 18 N -0.978 5.978 19 Si 0.962 3.038 20 H -0.283 1.283 21 H -0.301 1.301 22 H -0.282 1.282 23 N -0.220 5.220 24 N -0.085 5.085 25 N -0.342 5.342 26 C 0.129 3.871 27 C -0.154 4.154 28 C -0.158 4.158 29 H 0.103 0.897 30 H 0.081 0.919 31 H 0.100 0.900 32 H 0.136 0.864 33 H 0.053 0.947 34 H 0.092 0.908 35 H 0.055 0.945 36 H 0.065 0.935 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.062 0.938 40 H 0.029 0.971 41 H 0.015 0.985 42 H 0.364 0.636 43 H 0.241 0.759 44 H 0.131 0.869 45 H 0.057 0.943 46 H 0.062 0.938 47 H 0.113 0.887 48 H 0.114 0.886 49 H 0.049 0.951 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.250 -13.231 12.427 21.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.018 4.018 3 C -0.254 4.254 4 C 0.338 3.662 5 O -0.350 6.350 6 N -0.334 5.334 7 C -0.057 4.057 8 C -0.160 4.160 9 C -0.150 4.150 10 C -0.156 4.156 11 C 0.042 3.958 12 H 0.074 0.926 13 C 0.039 3.961 14 N -0.341 5.341 15 C -0.323 4.323 16 H 0.080 0.920 17 C -0.275 4.275 18 N -0.632 5.632 19 Si 0.793 3.207 20 H -0.210 1.210 21 H -0.227 1.227 22 H -0.208 1.208 23 N -0.092 5.092 24 N -0.063 5.063 25 N -0.131 5.131 26 C 0.030 3.970 27 C -0.212 4.212 28 C -0.216 4.216 29 H 0.121 0.879 30 H 0.099 0.901 31 H 0.119 0.881 32 H 0.153 0.847 33 H 0.071 0.929 34 H 0.110 0.890 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.081 0.919 40 H 0.047 0.953 41 H 0.032 0.968 42 H 0.195 0.805 43 H 0.050 0.950 44 H 0.148 0.852 45 H 0.076 0.924 46 H 0.081 0.919 47 H 0.131 0.869 48 H 0.133 0.867 49 H 0.068 0.932 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 11.879 -13.554 12.451 21.905 hybrid contribution -1.732 0.229 -0.968 1.998 sum 10.146 -13.325 11.482 20.306 Atomic orbital electron populations 1.20687 0.83868 1.05406 1.05014 1.22065 0.96828 0.86330 0.96584 1.21560 0.89303 0.96033 1.18469 1.17384 0.86459 0.83114 0.79281 1.91266 1.16359 1.81328 1.46012 1.47729 1.07095 1.05166 1.73447 1.22751 0.78657 1.06079 0.98188 1.21754 1.01438 0.95770 0.97049 1.21511 0.94288 0.96221 1.03021 1.21846 0.96711 1.01099 0.95932 1.21419 0.94402 0.81324 0.98670 0.92566 1.20886 0.90396 0.95489 0.89282 1.42289 1.03361 1.81876 1.06608 1.19346 0.84555 1.34519 0.93917 0.91975 1.25264 1.00894 1.05304 0.96034 1.69832 1.34485 1.58492 1.00440 0.85347 0.81768 0.77840 0.75731 1.21015 1.22735 1.20832 1.73966 1.18812 1.04010 1.12396 1.81707 0.97949 1.03519 1.23114 1.50816 1.05079 1.08133 1.49042 1.22175 1.02062 0.73358 0.99430 1.22129 1.02206 1.02289 0.94530 1.22161 1.02251 1.02403 0.94807 0.87905 0.90064 0.88144 0.84744 0.92865 0.88962 0.92590 0.91637 0.89604 0.89593 0.91910 0.95310 0.96768 0.80465 0.94991 0.85170 0.92351 0.91923 0.86854 0.86702 0.93216 0.91891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.64 9.48 71.24 0.68 -1.97 16 2 C 0.12 3.79 7.02 41.72 0.29 4.09 16 3 C -0.11 -4.23 6.77 40.82 0.28 -3.95 16 4 C 0.55 23.28 7.42 86.69 0.64 23.92 16 5 O -0.48 -23.45 8.07 -4.02 -0.03 -23.48 16 6 N -0.60 -22.08 2.98 -799.59 -2.38 -24.46 16 7 C 0.07 2.01 6.28 86.22 0.54 2.55 16 8 C -0.12 -2.82 6.07 30.53 0.19 -2.63 16 9 C -0.11 -2.44 5.88 30.62 0.18 -2.26 16 10 C -0.12 -3.14 5.35 30.67 0.16 -2.98 16 11 C 0.15 5.27 2.91 44.98 0.13 5.40 16 12 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 13 C 0.17 7.41 4.90 86.38 0.42 7.83 16 14 N -0.70 -38.55 3.27 -343.44 -1.12 -39.67 16 15 C -0.19 -11.33 9.17 84.03 0.77 -10.56 16 16 H 0.06 3.62 7.83 -2.91 -0.02 3.60 16 17 C -0.08 -5.16 5.50 84.86 0.47 -4.69 16 18 N -0.98 -63.60 13.06 21.65 0.28 -63.32 16 19 Si 0.96 48.87 29.55 68.60 2.03 50.89 16 20 H -0.28 -13.91 7.11 99.48 0.71 -13.20 16 21 H -0.30 -15.40 7.11 99.48 0.71 -14.69 16 22 H -0.28 -13.72 7.11 99.48 0.71 -13.02 16 23 N -0.22 -7.51 8.63 -49.99 -0.43 -7.94 16 24 N -0.08 -2.58 13.67 37.02 0.51 -2.08 16 25 N -0.34 -8.90 3.28 -313.38 -1.03 -9.93 16 26 C 0.13 2.04 3.68 44.99 0.17 2.21 16 27 C -0.15 -1.83 9.46 71.98 0.68 -1.15 16 28 C -0.16 -2.23 9.47 71.98 0.68 -1.55 16 29 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 30 H 0.08 3.25 6.33 -2.38 -0.02 3.23 16 31 H 0.10 2.16 7.18 -2.39 -0.02 2.15 16 32 H 0.14 4.30 3.62 -104.02 -0.38 3.92 16 33 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 36 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.03 1.38 6.38 -2.39 -0.02 1.36 16 41 H 0.01 0.64 8.10 -2.39 -0.02 0.62 16 42 H 0.36 21.89 7.61 -92.71 -0.71 21.18 16 43 H 0.24 15.35 8.31 -92.71 -0.77 14.58 16 44 H 0.13 1.52 6.79 -2.39 -0.02 1.50 16 45 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 47 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 48 H 0.11 0.83 8.14 -2.39 -0.02 0.82 16 49 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 50 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -77.68 387.44 3.97 -73.71 By element: Atomic # 1 Polarization: 32.14 SS G_CDS: -0.13 Total: 32.01 kcal Atomic # 6 Polarization: 7.98 SS G_CDS: 6.28 Total: 14.26 kcal Atomic # 7 Polarization: -143.22 SS G_CDS: -4.17 Total: -147.39 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: -0.03 Total: -23.48 kcal Atomic # 14 Polarization: 48.87 SS G_CDS: 2.03 Total: 50.89 kcal Total: -77.68 3.97 -73.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570091819.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.681 kcal (2) G-P(sol) polarization free energy of solvation -77.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds