Wall clock time and date at job start Tue Mar 31 2020 19:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46988 * 2 1 4 4 N 1.46500 * 109.44484 * 305.18484 * 3 2 1 5 5 C 1.36936 * 120.00241 * 296.07135 * 4 3 2 6 6 H 1.08004 * 119.99634 * 5.52135 * 5 4 3 7 7 C 1.38811 * 120.00076 * 185.52371 * 5 4 3 8 8 N 1.31618 * 120.00103 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00031 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47114 * 89.99671 * 9 7 5 11 11 H 1.48492 * 109.47115 * 209.99644 * 9 7 5 12 12 H 1.48505 * 109.46785 * 329.99646 * 9 7 5 13 13 C 1.53034 * 109.45903 * 185.22219 * 3 2 1 14 14 C 1.53197 * 109.31167 * 178.61027 * 13 3 2 15 15 N 1.46927 * 108.77359 * 54.63697 * 14 13 3 16 16 C 1.34775 * 120.63061 * 126.37217 * 15 14 13 17 17 O 1.21280 * 119.99902 * 359.97438 * 16 15 14 18 18 C 1.50696 * 119.99926 * 179.97438 * 16 15 14 19 19 C 1.53000 * 109.47150 * 179.97438 * 18 16 15 20 20 C 1.50703 * 109.46991 * 179.97438 * 19 18 16 21 21 C 1.35358 * 126.75039 * 124.71186 * 20 19 18 22 22 N 1.35302 * 106.17515 * 180.26160 * 21 20 19 23 23 C 1.46505 * 125.86878 * 179.97438 * 22 21 20 24 24 N 1.28721 * 108.26801 * 0.02562 * 22 21 20 25 25 N 1.28630 * 110.17144 * 359.97438 * 24 22 21 26 26 C 1.46924 * 118.73414 * 306.64018 * 15 14 13 27 27 C 1.52760 * 109.01190 * 53.31290 * 26 15 14 28 28 H 1.08998 * 109.47063 * 54.16724 * 1 2 3 29 29 H 1.09004 * 109.46714 * 174.15910 * 1 2 3 30 30 H 1.09002 * 109.47621 * 294.16147 * 1 2 3 31 31 H 1.09000 * 109.47095 * 239.99378 * 2 1 3 32 32 H 1.09003 * 109.46615 * 119.99571 * 2 1 3 33 33 H 0.97003 * 119.99958 * 116.07744 * 4 3 2 34 34 H 0.97003 * 120.00289 * 180.02562 * 8 7 5 35 35 H 1.08998 * 109.50140 * 58.66184 * 13 3 2 36 36 H 1.08997 * 109.49927 * 298.55966 * 13 3 2 37 37 H 1.08997 * 109.58782 * 294.84141 * 14 13 3 38 38 H 1.09006 * 109.58292 * 174.41810 * 14 13 3 39 39 H 1.09009 * 109.47133 * 59.99695 * 18 16 15 40 40 H 1.09000 * 109.47216 * 300.00124 * 18 16 15 41 41 H 1.08995 * 109.47073 * 60.00231 * 19 18 16 42 42 H 1.08992 * 109.47283 * 299.99934 * 19 18 16 43 43 H 1.08006 * 126.90832 * 0.26835 * 21 20 19 44 44 H 1.09001 * 109.46928 * 270.02091 * 23 22 21 45 45 H 1.09001 * 109.46900 * 30.01712 * 23 22 21 46 46 H 1.08993 * 109.47694 * 150.01646 * 23 22 21 47 47 H 1.09008 * 109.58303 * 173.14829 * 26 15 14 48 48 H 1.09005 * 109.58841 * 293.56756 * 26 15 14 49 49 H 1.09000 * 109.56509 * 185.54646 * 27 26 15 50 50 H 1.09002 * 109.35432 * 65.49715 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.4521 2.1676 -1.1290 5 6 1.7400 1.7863 -2.4123 6 1 2.3275 0.8983 -2.5928 7 6 1.2768 2.5413 -3.4812 8 7 0.5605 3.6233 -3.2612 9 14 1.6690 2.0207 -5.2318 10 1 0.6022 1.1158 -5.7300 11 1 1.7442 3.2227 -6.1006 12 1 2.9726 1.3098 -5.2565 13 6 3.5647 1.4442 -0.1313 14 6 4.0686 2.8905 -0.1659 15 7 3.5643 3.5954 1.0205 16 6 4.4103 4.2442 1.8450 17 8 5.6004 4.2494 1.6111 18 6 3.8776 4.9630 3.0576 19 6 5.0374 5.6103 3.8172 20 6 4.5045 6.3297 5.0295 21 6 4.8896 6.1466 6.3142 22 7 4.1432 6.9969 7.0562 23 6 4.2108 7.1524 8.5114 24 7 3.3626 7.6450 6.2641 25 7 3.5537 7.2704 5.0485 26 6 2.1209 3.5746 1.2941 27 6 1.6382 2.1254 1.3093 28 1 -0.3633 0.6016 -0.8331 29 1 -0.3633 -1.0224 -0.1046 30 1 -0.3634 0.4206 0.9376 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 0.8588 2.9180 -0.9676 34 1 0.2364 4.1506 -4.0081 35 1 3.8511 0.9371 -1.0527 36 1 4.0039 0.9263 0.7212 37 1 3.7031 3.3834 -1.0668 38 1 5.1586 2.8979 -0.1595 39 1 3.3699 4.2509 3.7083 40 1 3.1737 5.7336 2.7431 41 1 5.5453 6.3223 3.1668 42 1 5.7408 4.8395 4.1318 43 1 5.6414 5.4600 6.6744 44 1 3.5101 6.4636 8.9834 45 1 5.2222 6.9328 8.8536 46 1 3.9507 8.1762 8.7800 47 1 1.9262 4.0333 2.2636 48 1 1.5933 4.1245 0.5148 49 1 0.5534 2.1030 1.4134 50 1 2.0955 1.6010 2.1484 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570265458.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:45:44 Heat of formation + Delta-G solvation = 69.695337 kcal Electronic energy + Delta-G solvation = -29688.358273 eV Core-core repulsion = 25753.052601 eV Total energy + Delta-G solvation = -3935.305672 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.46806 -39.96208 -38.04148 -35.38775 -34.67853 -33.62803 -32.56315 -31.15242 -30.13414 -29.98333 -28.98950 -28.20542 -25.70165 -24.37302 -23.61784 -22.76336 -22.32711 -21.53898 -20.80613 -19.20390 -17.97124 -17.51421 -17.01714 -16.88240 -16.67986 -15.64105 -15.44203 -15.01006 -14.59586 -14.32858 -14.01657 -13.95170 -13.81115 -13.71682 -13.56348 -13.36662 -13.01422 -12.77207 -12.54795 -12.43284 -12.18847 -11.82692 -11.74951 -11.59794 -11.39505 -11.22366 -11.09112 -10.85465 -10.81398 -10.69798 -10.54633 -10.33313 -10.28834 -10.20514 -9.91746 -9.66399 -9.51230 -9.36245 -9.23789 -8.88043 -8.09365 -6.91117 -5.75042 -3.03038 1.33353 2.07157 2.32777 2.98072 3.43417 3.44540 3.50743 3.51934 4.01305 4.25307 4.50059 4.55721 4.60738 4.77015 4.78949 4.94469 5.11285 5.16015 5.22506 5.35882 5.42061 5.48297 5.57367 5.61641 5.68842 5.74472 5.87186 5.92072 5.99020 6.01418 6.02353 6.11626 6.14152 6.20028 6.23620 6.27647 6.35644 6.47064 6.56881 6.66353 6.73791 6.85786 6.94318 6.98261 7.15272 7.19214 7.75115 7.88306 8.29620 8.43731 8.54015 9.55377 10.11668 10.47489 11.47250 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.018085 B = 0.002484 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.907190 B =11269.680377 C =11626.601146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.124 4.124 3 C 0.202 3.798 4 N -0.712 5.712 5 C -0.228 4.228 6 H 0.069 0.931 7 C -0.011 4.011 8 N -0.931 5.931 9 Si 0.899 3.101 10 H -0.292 1.292 11 H -0.293 1.293 12 H -0.283 1.283 13 C -0.131 4.131 14 C 0.121 3.879 15 N -0.597 5.597 16 C 0.512 3.488 17 O -0.558 6.558 18 C -0.133 4.133 19 C -0.016 4.016 20 C -0.013 4.013 21 C -0.051 4.051 22 N -0.298 5.298 23 C 0.082 3.918 24 N -0.088 5.088 25 N -0.261 5.261 26 C 0.109 3.891 27 C -0.131 4.131 28 H 0.077 0.923 29 H 0.033 0.967 30 H 0.038 0.962 31 H 0.058 0.942 32 H 0.039 0.961 33 H 0.383 0.617 34 H 0.254 0.746 35 H 0.074 0.926 36 H 0.045 0.955 37 H 0.088 0.912 38 H 0.075 0.925 39 H 0.089 0.911 40 H 0.100 0.900 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.191 0.809 44 H 0.091 0.909 45 H 0.098 0.902 46 H 0.100 0.900 47 H 0.074 0.926 48 H 0.081 0.919 49 H 0.076 0.924 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.671 1.626 23.814 24.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.164 4.164 3 C 0.110 3.890 4 N -0.353 5.353 5 C -0.359 4.359 6 H 0.087 0.913 7 C -0.207 4.207 8 N -0.580 5.580 9 Si 0.731 3.269 10 H -0.220 1.220 11 H -0.220 1.220 12 H -0.209 1.209 13 C -0.171 4.171 14 C -0.001 4.001 15 N -0.329 5.329 16 C 0.300 3.700 17 O -0.437 6.437 18 C -0.173 4.173 19 C -0.055 4.055 20 C -0.151 4.151 21 C -0.201 4.201 22 N -0.092 5.092 23 C -0.059 4.059 24 N -0.068 5.068 25 N -0.128 5.128 26 C -0.014 4.014 27 C -0.169 4.169 28 H 0.096 0.904 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.077 0.923 32 H 0.058 0.942 33 H 0.218 0.782 34 H 0.064 0.936 35 H 0.092 0.908 36 H 0.064 0.936 37 H 0.106 0.894 38 H 0.093 0.907 39 H 0.107 0.893 40 H 0.118 0.882 41 H 0.108 0.892 42 H 0.106 0.894 43 H 0.208 0.792 44 H 0.109 0.891 45 H 0.116 0.884 46 H 0.119 0.881 47 H 0.092 0.908 48 H 0.099 0.901 49 H 0.094 0.906 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.244 2.665 23.460 24.422 hybrid contribution 0.679 -0.936 -0.683 1.343 sum 6.923 1.729 22.776 23.868 Atomic orbital electron populations 1.21670 0.96151 1.00080 1.01962 1.21923 0.96317 0.98281 0.99883 1.19543 0.90945 0.91063 0.87425 1.42435 1.55450 1.37087 1.00369 1.19071 1.27612 1.06305 0.82959 0.91330 1.24680 1.01154 0.97358 0.97515 1.69641 1.40796 1.17399 1.30128 0.86308 0.77813 0.77186 0.85596 1.21987 1.21972 1.20878 1.22256 0.98045 0.95789 1.01046 1.21567 0.98648 0.92503 0.87346 1.48102 1.07416 1.51559 1.25842 1.20508 0.86289 0.79053 0.84125 1.90648 1.15824 1.62462 1.74786 1.21592 0.99538 1.00750 0.95411 1.19615 0.96510 0.98474 0.90926 1.22115 0.98456 0.99375 0.95194 1.23414 1.03408 1.01474 0.91847 1.47240 1.25739 1.26380 1.09794 1.22248 1.04873 1.05594 0.73216 1.78332 1.14695 1.18249 0.95477 1.75081 1.15336 1.11786 1.10644 1.21666 0.80445 0.97848 1.01409 1.22037 1.01320 0.95317 0.98273 0.90445 0.94832 0.94271 0.92321 0.94207 0.78227 0.93632 0.90792 0.93617 0.89411 0.90695 0.89262 0.88166 0.89238 0.89429 0.79235 0.89086 0.88353 0.88094 0.90768 0.90072 0.90559 0.92107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.41 37.16 0.35 -2.03 16 2 C -0.12 -2.12 4.78 -26.73 -0.13 -2.24 16 3 C 0.20 3.59 0.44 -131.78 -0.06 3.53 16 4 N -0.71 -15.61 3.00 -47.20 -0.14 -15.76 16 5 C -0.23 -5.73 8.59 -15.06 -0.13 -5.86 16 6 H 0.07 1.72 6.78 -52.48 -0.36 1.36 16 7 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 8 N -0.93 -26.72 13.07 55.49 0.73 -25.99 16 9 Si 0.90 21.88 29.55 -169.99 -5.02 16.86 16 10 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 11 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 C -0.13 -2.33 4.64 -26.61 -0.12 -2.45 16 14 C 0.12 2.25 6.18 -3.71 -0.02 2.23 16 15 N -0.60 -9.89 2.98 -173.02 -0.52 -10.41 16 16 C 0.51 8.20 7.70 -10.99 -0.08 8.11 16 17 O -0.56 -10.51 15.39 5.56 0.09 -10.42 16 18 C -0.13 -1.64 4.03 -27.88 -0.11 -1.75 16 19 C -0.02 -0.18 5.08 -27.88 -0.14 -0.32 16 20 C -0.01 -0.15 6.50 -82.78 -0.54 -0.69 16 21 C -0.05 -0.42 11.54 -17.05 -0.20 -0.62 16 22 N -0.30 -2.50 3.74 -68.05 -0.25 -2.76 16 23 C 0.08 0.24 11.39 59.85 0.68 0.92 16 24 N -0.09 -1.09 13.17 60.35 0.79 -0.30 16 25 N -0.26 -3.62 12.40 33.29 0.41 -3.20 16 26 C 0.11 1.65 6.05 -3.93 -0.02 1.62 16 27 C -0.13 -1.96 4.71 -26.84 -0.13 -2.09 16 28 H 0.08 1.55 7.26 -51.93 -0.38 1.18 16 29 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.04 0.59 6.83 -51.93 -0.35 0.23 16 31 H 0.06 1.09 7.56 -51.93 -0.39 0.70 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.38 9.12 6.61 -40.82 -0.27 8.85 16 34 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 35 H 0.07 1.40 7.22 -51.93 -0.37 1.03 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.09 1.91 7.62 -51.93 -0.40 1.52 16 38 H 0.07 1.42 7.01 -51.93 -0.36 1.05 16 39 H 0.09 0.97 7.68 -51.92 -0.40 0.57 16 40 H 0.10 1.28 7.95 -51.93 -0.41 0.87 16 41 H 0.09 1.12 8.10 -51.93 -0.42 0.70 16 42 H 0.09 0.89 8.08 -51.93 -0.42 0.47 16 43 H 0.19 0.81 8.06 -52.48 -0.42 0.39 16 44 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 45 H 0.10 0.03 8.14 -51.93 -0.42 -0.39 16 46 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 47 H 0.07 0.91 5.94 -51.92 -0.31 0.61 16 48 H 0.08 1.41 7.02 -51.93 -0.36 1.04 16 49 H 0.08 1.11 6.64 -51.93 -0.34 0.77 16 50 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 392.81 15.07 5.92 5.92 Total: -1.00 -32.98 392.81 -6.82 -39.79 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -8.07 Total: 8.30 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: -0.75 Total: -2.04 kcal Atomic # 7 Polarization: -59.43 SS G_CDS: 1.02 Total: -58.41 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.09 Total: -10.42 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.98 -6.82 -39.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570265458.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.489 kcal (2) G-P(sol) polarization free energy of solvation -32.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds