Wall clock time and date at job start Tue Mar 31 2020 19:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46988 * 2 1 4 4 N 1.46500 * 109.44484 * 305.18484 * 3 2 1 5 5 C 1.36936 * 120.00241 * 296.07135 * 4 3 2 6 6 H 1.08004 * 119.99634 * 5.52135 * 5 4 3 7 7 C 1.38811 * 120.00076 * 185.52371 * 5 4 3 8 8 N 1.31618 * 120.00103 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00031 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47114 * 89.99671 * 9 7 5 11 11 H 1.48492 * 109.47115 * 209.99644 * 9 7 5 12 12 H 1.48505 * 109.46785 * 329.99646 * 9 7 5 13 13 C 1.53034 * 109.45903 * 185.22219 * 3 2 1 14 14 C 1.53197 * 109.31167 * 178.61027 * 13 3 2 15 15 N 1.46927 * 108.77359 * 54.63697 * 14 13 3 16 16 C 1.34775 * 120.63061 * 126.37217 * 15 14 13 17 17 O 1.21280 * 119.99902 * 359.97438 * 16 15 14 18 18 C 1.50696 * 119.99926 * 179.97438 * 16 15 14 19 19 C 1.53000 * 109.47150 * 179.97438 * 18 16 15 20 20 C 1.50703 * 109.46991 * 179.97438 * 19 18 16 21 21 C 1.35358 * 126.75039 * 124.71186 * 20 19 18 22 22 N 1.35302 * 106.17515 * 180.26160 * 21 20 19 23 23 C 1.46505 * 125.86878 * 179.97438 * 22 21 20 24 24 N 1.28721 * 108.26801 * 0.02562 * 22 21 20 25 25 N 1.28630 * 110.17144 * 359.97438 * 24 22 21 26 26 C 1.46924 * 118.73414 * 306.64018 * 15 14 13 27 27 C 1.52760 * 109.01190 * 53.31290 * 26 15 14 28 28 H 1.08998 * 109.47063 * 54.16724 * 1 2 3 29 29 H 1.09004 * 109.46714 * 174.15910 * 1 2 3 30 30 H 1.09002 * 109.47621 * 294.16147 * 1 2 3 31 31 H 1.09000 * 109.47095 * 239.99378 * 2 1 3 32 32 H 1.09003 * 109.46615 * 119.99571 * 2 1 3 33 33 H 0.97003 * 119.99958 * 116.07744 * 4 3 2 34 34 H 0.97003 * 120.00289 * 180.02562 * 8 7 5 35 35 H 1.08998 * 109.50140 * 58.66184 * 13 3 2 36 36 H 1.08997 * 109.49927 * 298.55966 * 13 3 2 37 37 H 1.08997 * 109.58782 * 294.84141 * 14 13 3 38 38 H 1.09006 * 109.58292 * 174.41810 * 14 13 3 39 39 H 1.09009 * 109.47133 * 59.99695 * 18 16 15 40 40 H 1.09000 * 109.47216 * 300.00124 * 18 16 15 41 41 H 1.08995 * 109.47073 * 60.00231 * 19 18 16 42 42 H 1.08992 * 109.47283 * 299.99934 * 19 18 16 43 43 H 1.08006 * 126.90832 * 0.26835 * 21 20 19 44 44 H 1.09001 * 109.46928 * 270.02091 * 23 22 21 45 45 H 1.09001 * 109.46900 * 30.01712 * 23 22 21 46 46 H 1.08993 * 109.47694 * 150.01646 * 23 22 21 47 47 H 1.09008 * 109.58303 * 173.14829 * 26 15 14 48 48 H 1.09005 * 109.58841 * 293.56756 * 26 15 14 49 49 H 1.09000 * 109.56509 * 185.54646 * 27 26 15 50 50 H 1.09002 * 109.35432 * 65.49715 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.4521 2.1676 -1.1290 5 6 1.7400 1.7863 -2.4123 6 1 2.3275 0.8983 -2.5928 7 6 1.2768 2.5413 -3.4812 8 7 0.5605 3.6233 -3.2612 9 14 1.6690 2.0207 -5.2318 10 1 0.6022 1.1158 -5.7300 11 1 1.7442 3.2227 -6.1006 12 1 2.9726 1.3098 -5.2565 13 6 3.5647 1.4442 -0.1313 14 6 4.0686 2.8905 -0.1659 15 7 3.5643 3.5954 1.0205 16 6 4.4103 4.2442 1.8450 17 8 5.6004 4.2494 1.6111 18 6 3.8776 4.9630 3.0576 19 6 5.0374 5.6103 3.8172 20 6 4.5045 6.3297 5.0295 21 6 4.8896 6.1466 6.3142 22 7 4.1432 6.9969 7.0562 23 6 4.2108 7.1524 8.5114 24 7 3.3626 7.6450 6.2641 25 7 3.5537 7.2704 5.0485 26 6 2.1209 3.5746 1.2941 27 6 1.6382 2.1254 1.3093 28 1 -0.3633 0.6016 -0.8331 29 1 -0.3633 -1.0224 -0.1046 30 1 -0.3634 0.4206 0.9376 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 0.8588 2.9180 -0.9676 34 1 0.2364 4.1506 -4.0081 35 1 3.8511 0.9371 -1.0527 36 1 4.0039 0.9263 0.7212 37 1 3.7031 3.3834 -1.0668 38 1 5.1586 2.8979 -0.1595 39 1 3.3699 4.2509 3.7083 40 1 3.1737 5.7336 2.7431 41 1 5.5453 6.3223 3.1668 42 1 5.7408 4.8395 4.1318 43 1 5.6414 5.4600 6.6744 44 1 3.5101 6.4636 8.9834 45 1 5.2222 6.9328 8.8536 46 1 3.9507 8.1762 8.7800 47 1 1.9262 4.0333 2.2636 48 1 1.5933 4.1245 0.5148 49 1 0.5534 2.1030 1.4134 50 1 2.0955 1.6010 2.1484 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570265458.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:45:43 Heat of formation + Delta-G solvation = 48.272067 kcal Electronic energy + Delta-G solvation = -29689.287255 eV Core-core repulsion = 25753.052601 eV Total energy + Delta-G solvation = -3936.234654 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -44.17515 -41.31249 -39.45530 -36.21401 -36.04468 -34.46696 -34.40005 -32.42357 -31.48306 -31.16670 -30.55122 -28.67179 -26.89747 -25.91003 -25.15583 -24.13656 -22.98006 -22.71770 -21.77692 -20.55826 -19.41445 -18.89775 -18.34782 -17.71719 -17.51947 -16.84120 -16.71811 -16.35361 -15.76738 -15.66233 -15.36349 -15.33271 -15.12344 -14.88749 -14.45858 -14.26303 -14.09175 -13.90761 -13.80450 -13.56847 -13.39005 -13.06388 -12.95990 -12.83480 -12.80595 -12.60419 -12.47403 -12.26809 -12.26617 -12.15168 -11.99439 -11.79042 -11.60895 -11.48589 -11.35160 -10.98764 -10.92383 -10.77122 -10.66020 -10.08823 -9.52841 -8.80325 -7.83111 -5.06495 0.69218 1.47515 1.49417 1.50883 1.55366 1.63108 1.70392 2.15714 2.62390 3.34922 3.51291 3.64294 3.80600 3.86765 3.94620 4.08489 4.10936 4.18662 4.23108 4.25131 4.34719 4.38404 4.43807 4.54737 4.58620 4.62193 4.68052 4.71538 4.77858 4.81045 4.83091 4.87878 4.95416 5.05346 5.11826 5.17182 5.17329 5.22505 5.28412 5.32911 5.42450 5.44521 5.58504 5.66479 5.73793 5.74336 5.78722 6.40301 6.58429 7.24063 7.47803 7.55079 8.25752 8.48618 9.40190 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.018085 B = 0.002484 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.907190 B =11269.680377 C =11626.601146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.120 4.120 3 C 0.193 3.807 4 N -0.714 5.714 5 C -0.201 4.201 6 H 0.070 0.930 7 C -0.074 4.074 8 N -0.967 5.967 9 Si 0.949 3.051 10 H -0.294 1.294 11 H -0.305 1.305 12 H -0.275 1.275 13 C -0.123 4.123 14 C 0.129 3.871 15 N -0.600 5.600 16 C 0.511 3.489 17 O -0.588 6.588 18 C -0.121 4.121 19 C -0.007 4.007 20 C -0.038 4.038 21 C -0.028 4.028 22 N -0.289 5.289 23 C 0.069 3.931 24 N -0.125 5.125 25 N -0.306 5.306 26 C 0.111 3.889 27 C -0.123 4.123 28 H 0.037 0.963 29 H 0.047 0.953 30 H 0.060 0.940 31 H 0.037 0.963 32 H 0.071 0.929 33 H 0.373 0.627 34 H 0.244 0.756 35 H 0.055 0.945 36 H 0.070 0.930 37 H 0.046 0.954 38 H 0.068 0.932 39 H 0.115 0.885 40 H 0.094 0.906 41 H 0.068 0.932 42 H 0.103 0.897 43 H 0.235 0.765 44 H 0.108 0.892 45 H 0.131 0.869 46 H 0.103 0.897 47 H 0.109 0.891 48 H 0.051 0.949 49 H 0.085 0.915 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.544 -0.115 27.731 28.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.159 4.159 3 C 0.103 3.897 4 N -0.354 5.354 5 C -0.333 4.333 6 H 0.087 0.913 7 C -0.266 4.266 8 N -0.619 5.619 9 Si 0.781 3.219 10 H -0.222 1.222 11 H -0.233 1.233 12 H -0.200 1.200 13 C -0.163 4.163 14 C 0.006 3.994 15 N -0.331 5.331 16 C 0.301 3.699 17 O -0.470 6.470 18 C -0.161 4.161 19 C -0.047 4.047 20 C -0.177 4.177 21 C -0.180 4.180 22 N -0.083 5.083 23 C -0.070 4.070 24 N -0.104 5.104 25 N -0.172 5.172 26 C -0.011 4.011 27 C -0.162 4.162 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.056 0.944 32 H 0.090 0.910 33 H 0.206 0.794 34 H 0.053 0.947 35 H 0.074 0.926 36 H 0.088 0.912 37 H 0.064 0.936 38 H 0.087 0.913 39 H 0.133 0.867 40 H 0.113 0.887 41 H 0.086 0.914 42 H 0.122 0.878 43 H 0.251 0.749 44 H 0.126 0.874 45 H 0.150 0.850 46 H 0.122 0.878 47 H 0.127 0.873 48 H 0.070 0.930 49 H 0.103 0.897 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 7.114 0.903 27.431 28.353 hybrid contribution 0.503 -0.438 -1.738 1.861 sum 7.617 0.465 25.694 26.803 Atomic orbital electron populations 1.21585 0.95890 1.00367 1.01420 1.21865 0.96439 0.97211 1.00435 1.19856 0.90660 0.91674 0.87503 1.42543 1.55265 1.36971 1.00629 1.19298 1.24729 1.04989 0.84306 0.91260 1.25244 1.02801 0.98196 1.00369 1.69772 1.43189 1.18870 1.30045 0.85482 0.77758 0.76204 0.82455 1.22161 1.23275 1.20019 1.22171 0.97984 0.94972 1.01187 1.21243 0.98127 0.93062 0.86946 1.48152 1.08220 1.51537 1.25215 1.21157 0.85771 0.78292 0.84690 1.90631 1.17291 1.63360 1.75677 1.21553 0.99900 1.00629 0.93988 1.19493 0.96111 0.98299 0.90772 1.22181 0.99173 0.99930 0.96388 1.24012 1.02700 1.00642 0.90648 1.47682 1.24204 1.25015 1.11369 1.22739 1.07530 1.06478 0.70217 1.78244 1.16607 1.19921 0.95656 1.75008 1.17045 1.13271 1.11880 1.21712 0.79091 0.98138 1.02149 1.22005 1.02109 0.94859 0.97177 0.94357 0.93426 0.92136 0.94374 0.91011 0.79425 0.94717 0.92582 0.91159 0.93575 0.91343 0.86683 0.88747 0.91369 0.87827 0.74914 0.87363 0.85028 0.87796 0.87311 0.93042 0.89671 0.89196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.26 9.41 71.98 0.68 -3.59 16 2 C -0.12 -3.80 4.78 30.60 0.15 -3.65 16 3 C 0.19 6.59 0.44 3.63 0.00 6.59 16 4 N -0.71 -31.73 3.00 -303.24 -0.91 -32.63 16 5 C -0.20 -10.28 8.59 84.03 0.72 -9.56 16 6 H 0.07 3.51 6.78 -2.91 -0.02 3.49 16 7 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 8 N -0.97 -57.68 13.07 21.65 0.28 -57.40 16 9 Si 0.95 46.32 29.55 68.60 2.03 48.35 16 10 H -0.29 -14.24 7.11 99.48 0.71 -13.54 16 11 H -0.31 -15.40 7.11 99.48 0.71 -14.69 16 12 H -0.27 -12.84 7.11 99.48 0.71 -12.14 16 13 C -0.12 -4.23 4.64 30.67 0.14 -4.09 16 14 C 0.13 4.86 6.18 86.36 0.53 5.39 16 15 N -0.60 -19.39 2.98 -819.71 -2.44 -21.83 16 16 C 0.51 15.80 7.70 87.66 0.67 16.48 16 17 O -0.59 -21.91 15.39 -3.03 -0.05 -21.95 16 18 C -0.12 -2.77 4.03 29.85 0.12 -2.64 16 19 C -0.01 -0.15 5.08 29.85 0.15 0.00 16 20 C -0.04 -0.78 6.50 41.60 0.27 -0.51 16 21 C -0.03 -0.37 11.54 83.49 0.96 0.60 16 22 N -0.29 -4.08 3.74 -369.22 -1.38 -5.46 16 23 C 0.07 0.16 11.39 127.77 1.46 1.62 16 24 N -0.13 -2.98 13.17 37.02 0.49 -2.49 16 25 N -0.31 -8.30 12.40 -48.60 -0.60 -8.91 16 26 C 0.11 3.19 6.05 86.22 0.52 3.71 16 27 C -0.12 -3.34 4.71 30.53 0.14 -3.19 16 28 H 0.04 1.50 7.26 -2.39 -0.02 1.49 16 29 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 30 H 0.06 1.63 6.83 -2.39 -0.02 1.62 16 31 H 0.04 1.35 7.56 -2.39 -0.02 1.33 16 32 H 0.07 1.85 8.14 -2.39 -0.02 1.84 16 33 H 0.37 18.22 6.61 -92.71 -0.61 17.61 16 34 H 0.24 14.50 8.31 -92.71 -0.77 13.73 16 35 H 0.06 2.11 7.22 -2.39 -0.02 2.09 16 36 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.05 2.11 7.62 -2.39 -0.02 2.09 16 38 H 0.07 2.63 7.01 -2.38 -0.02 2.62 16 39 H 0.12 2.06 7.68 -2.38 -0.02 2.05 16 40 H 0.09 2.33 7.95 -2.39 -0.02 2.31 16 41 H 0.07 1.71 8.10 -2.39 -0.02 1.69 16 42 H 0.10 1.82 8.08 -2.39 -0.02 1.80 16 43 H 0.23 0.71 8.06 -2.91 -0.02 0.69 16 44 H 0.11 -0.06 8.14 -2.39 -0.02 -0.08 16 45 H 0.13 -0.55 8.14 -2.39 -0.02 -0.57 16 46 H 0.10 0.21 8.14 -2.39 -0.02 0.19 16 47 H 0.11 2.37 5.94 -2.38 -0.01 2.35 16 48 H 0.05 1.80 7.02 -2.38 -0.02 1.79 16 49 H 0.08 2.21 6.64 -2.39 -0.02 2.19 16 50 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -76.25 392.81 4.74 -71.51 By element: Atomic # 1 Polarization: 27.00 SS G_CDS: 0.33 Total: 27.33 kcal Atomic # 6 Polarization: -3.51 SS G_CDS: 6.99 Total: 3.48 kcal Atomic # 7 Polarization: -124.16 SS G_CDS: -4.56 Total: -128.72 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: -0.05 Total: -21.95 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.35 kcal Total: -76.25 4.74 -71.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570265458.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.778 kcal (2) G-P(sol) polarization free energy of solvation -76.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds