Wall clock time and date at job start Tue Mar 31 2020 18:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36594 * 126.57951 * 2 1 4 4 C 1.47525 * 125.77091 * 0.03274 * 3 2 1 5 5 O 1.21593 * 120.00263 * 353.47838 * 4 3 2 6 6 N 1.34783 * 119.99815 * 173.47150 * 4 3 2 7 7 C 1.46925 * 120.62716 * 172.71045 * 6 4 3 8 8 C 1.53192 * 108.77081 * 126.41819 * 7 6 4 9 9 C 1.53040 * 109.31509 * 54.63560 * 8 7 6 10 10 C 1.52997 * 109.46232 * 178.62761 * 9 8 7 11 11 N 1.46496 * 109.46020 * 58.65214 * 9 8 7 12 12 C 1.36933 * 120.00161 * 180.02562 * 11 9 8 13 13 H 1.07993 * 120.00101 * 0.02562 * 12 11 9 14 14 C 1.38815 * 119.99967 * 180.02562 * 12 11 9 15 15 N 1.31621 * 120.00293 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 119.99834 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.46759 * 179.97438 * 16 14 12 18 18 H 1.48502 * 109.46709 * 299.99005 * 16 14 12 19 19 H 1.48488 * 109.47351 * 59.99436 * 16 14 12 20 20 C 1.53041 * 109.53592 * 298.63637 * 9 8 7 21 21 C 1.46924 * 120.63087 * 352.74461 * 6 4 3 22 22 N 1.34399 * 108.45688 * 179.77112 * 3 2 1 23 23 N 1.28757 * 109.52714 * 0.22505 * 22 3 2 24 24 N 1.34815 * 126.57920 * 180.16039 * 2 1 3 25 25 C 1.46497 * 126.59548 * 359.97194 * 24 2 1 26 26 C 1.52995 * 109.47090 * 120.27433 * 25 24 2 27 27 C 1.52998 * 109.47179 * 240.27401 * 25 24 2 28 28 H 1.08998 * 109.47123 * 90.02541 * 1 2 3 29 29 H 1.08997 * 109.47509 * 210.03051 * 1 2 3 30 30 H 1.09008 * 109.46969 * 330.02774 * 1 2 3 31 31 H 1.08997 * 109.58960 * 6.63407 * 7 6 4 32 32 H 1.09001 * 109.58800 * 246.20312 * 7 6 4 33 33 H 1.09003 * 109.49800 * 294.68478 * 8 7 6 34 34 H 1.08998 * 109.52451 * 174.60688 * 8 7 6 35 35 H 1.09002 * 109.47141 * 300.02827 * 10 9 8 36 36 H 1.09005 * 109.47319 * 60.02408 * 10 9 8 37 37 H 1.08998 * 109.47152 * 180.02562 * 10 9 8 38 38 H 0.97007 * 120.00261 * 0.02562 * 11 9 8 39 39 H 0.97006 * 119.99291 * 0.02562 * 15 14 12 40 40 H 1.09000 * 109.49843 * 181.31606 * 20 9 8 41 41 H 1.09005 * 109.49604 * 301.40981 * 20 9 8 42 42 H 1.08997 * 109.58937 * 353.36338 * 21 6 4 43 43 H 1.08988 * 109.59003 * 113.79572 * 21 6 4 44 44 H 1.09003 * 109.47000 * 0.27276 * 25 24 2 45 45 H 1.09000 * 109.47081 * 299.99838 * 26 25 24 46 46 H 1.08992 * 109.47512 * 59.99621 * 26 25 24 47 47 H 1.09001 * 109.47130 * 180.02562 * 26 25 24 48 48 H 1.09004 * 109.47083 * 59.99821 * 27 25 24 49 49 H 1.09001 * 109.47048 * 179.97438 * 27 25 24 50 50 H 1.09003 * 109.47052 * 299.99842 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8737 2.5027 0.0007 5 8 0.6924 2.7649 -0.1183 6 7 2.7746 3.4964 0.1333 7 6 2.3692 4.9000 -0.0230 8 6 2.8088 5.6813 1.2192 9 6 4.3103 5.4813 1.4380 10 6 4.7595 6.2877 2.6581 11 7 5.0412 5.9394 0.2540 12 6 6.4077 5.8576 0.2188 13 1 6.9465 5.4550 1.0637 14 6 7.1003 6.2922 -0.9030 15 7 6.4437 6.7824 -1.9330 16 14 8.9644 6.1800 -0.9512 17 1 9.4583 6.7044 -2.2498 18 1 9.5375 6.9840 0.1580 19 1 9.3790 4.7621 -0.8005 20 6 4.5999 3.9971 1.6733 21 6 4.1807 3.1967 0.4362 22 7 3.5983 0.6788 0.0051 23 7 3.6299 -0.6083 0.0035 24 7 2.3104 -1.0826 -0.0030 25 6 1.8864 -2.4849 -0.0064 26 6 2.4343 -3.1804 -1.2541 27 6 2.4239 -3.1832 1.2443 28 1 -0.3633 -0.0005 -1.0276 29 1 -0.3634 -0.8897 0.5143 30 1 -0.3633 0.8903 0.5134 31 1 1.2858 4.9581 -0.1267 32 1 2.8462 5.3218 -0.9077 33 1 2.2628 5.3178 2.0898 34 1 2.6001 6.7414 1.0756 35 1 4.5539 7.3450 2.4906 36 1 4.2157 5.9470 3.5392 37 1 5.8290 6.1457 2.8137 38 1 4.5573 6.3007 -0.5052 39 1 5.4757 6.8403 -1.9080 40 1 5.6661 3.8584 1.8522 41 1 4.0370 3.6494 2.5396 42 1 4.2924 2.1309 0.6355 43 1 4.8053 3.4795 -0.4109 44 1 0.7975 -2.5351 -0.0110 45 1 2.0514 -2.6829 -2.1451 46 1 3.5231 -3.1300 -1.2496 47 1 2.1184 -4.2236 -1.2568 48 1 2.0335 -2.6877 2.1333 49 1 2.1080 -4.2264 1.2420 50 1 3.5127 -3.1329 1.2489 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570383356.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:05 Heat of formation + Delta-G solvation = 79.056548 kcal Electronic energy + Delta-G solvation = -30615.871502 eV Core-core repulsion = 26680.971763 eV Total energy + Delta-G solvation = -3934.899739 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.38808 -39.69650 -37.73827 -36.69126 -34.58225 -33.13998 -32.52147 -31.42323 -30.32971 -28.73303 -28.15265 -27.83704 -27.33474 -24.27125 -24.04803 -23.31807 -22.68912 -21.76241 -20.45532 -19.70029 -18.37405 -17.36328 -16.89748 -16.36653 -16.27496 -15.80881 -15.09862 -14.85542 -14.62261 -14.40317 -13.99198 -13.74231 -13.62204 -13.54078 -13.45624 -13.29430 -13.25138 -12.84826 -12.74337 -12.70084 -12.47378 -12.31782 -12.02593 -11.92648 -11.53052 -11.50989 -11.31798 -11.14478 -11.10728 -10.68636 -10.61956 -10.39895 -10.29718 -10.00959 -9.90092 -9.78947 -9.42317 -9.15116 -8.99845 -8.81785 -8.12419 -6.93169 -5.99821 -2.99325 1.06793 1.77582 1.85731 3.30115 3.44306 3.57389 3.60823 3.77668 3.93164 4.08728 4.29728 4.40263 4.45954 4.64584 4.74377 4.87705 5.01339 5.05315 5.18113 5.19893 5.24789 5.31998 5.38673 5.44959 5.46469 5.53999 5.62502 5.66040 5.71420 5.72669 5.79037 5.89945 5.96947 6.11846 6.15770 6.28484 6.33730 6.36855 6.41501 6.57574 6.68951 6.69316 6.82152 6.99159 7.08025 7.15434 7.76135 7.91446 7.99256 8.41278 8.84946 9.31985 10.18590 10.34414 11.48266 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013969 B = 0.003356 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.021390 B = 8340.971961 C = 9367.766314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.117 3.883 3 C -0.096 4.096 4 C 0.599 3.401 5 O -0.555 6.555 6 N -0.582 5.582 7 C 0.117 3.883 8 C -0.130 4.130 9 C 0.202 3.798 10 C -0.148 4.148 11 N -0.727 5.727 12 C -0.318 4.318 13 H 0.064 0.936 14 C -0.045 4.045 15 N -0.947 5.947 16 Si 1.075 2.925 17 H -0.287 1.287 18 H -0.297 1.297 19 H -0.296 1.296 20 C -0.131 4.131 21 C 0.094 3.906 22 N -0.195 5.195 23 N -0.068 5.068 24 N -0.358 5.358 25 C 0.144 3.856 26 C -0.163 4.163 27 C -0.163 4.163 28 H 0.090 0.910 29 H 0.071 0.929 30 H 0.110 0.890 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.047 0.953 36 H 0.035 0.965 37 H 0.056 0.944 38 H 0.366 0.634 39 H 0.254 0.746 40 H 0.074 0.926 41 H 0.044 0.956 42 H 0.115 0.885 43 H 0.084 0.916 44 H 0.108 0.892 45 H 0.064 0.936 46 H 0.075 0.925 47 H 0.081 0.919 48 H 0.063 0.937 49 H 0.081 0.919 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.828 -19.718 6.309 24.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.021 4.021 3 C -0.235 4.235 4 C 0.385 3.615 5 O -0.434 6.434 6 N -0.312 5.312 7 C -0.005 4.005 8 C -0.168 4.168 9 C 0.110 3.890 10 C -0.208 4.208 11 N -0.371 5.371 12 C -0.449 4.449 13 H 0.082 0.918 14 C -0.243 4.243 15 N -0.593 5.593 16 Si 0.906 3.094 17 H -0.213 1.213 18 H -0.225 1.225 19 H -0.223 1.223 20 C -0.171 4.171 21 C -0.029 4.029 22 N -0.067 5.067 23 N -0.047 5.047 24 N -0.146 5.146 25 C 0.043 3.957 26 C -0.221 4.221 27 C -0.221 4.221 28 H 0.109 0.891 29 H 0.090 0.910 30 H 0.128 0.872 31 H 0.103 0.897 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.066 0.934 36 H 0.054 0.946 37 H 0.075 0.925 38 H 0.200 0.800 39 H 0.065 0.935 40 H 0.093 0.907 41 H 0.062 0.938 42 H 0.132 0.868 43 H 0.102 0.898 44 H 0.126 0.874 45 H 0.083 0.917 46 H 0.094 0.906 47 H 0.100 0.900 48 H 0.082 0.918 49 H 0.100 0.900 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -11.447 -19.790 5.477 23.509 hybrid contribution -2.194 -0.022 0.787 2.331 sum -13.642 -19.812 6.264 24.857 Atomic orbital electron populations 1.20657 0.84932 1.04923 1.04521 1.21851 0.96098 0.86376 0.97733 1.21249 0.88900 0.95442 1.17898 1.16780 0.85152 0.82563 0.76957 1.90703 1.16124 1.83452 1.53165 1.47910 1.10178 1.05756 1.67314 1.21590 1.00561 0.79757 0.98597 1.22095 0.97051 1.00011 0.97649 1.19487 0.89204 0.91703 0.88563 1.22197 1.01435 1.00034 0.97105 1.42492 1.03972 1.75697 1.14914 1.19910 0.83155 1.38977 1.02870 0.91774 1.25622 1.06193 0.99560 0.92906 1.70886 1.08394 1.48679 1.31295 0.83306 0.74863 0.75708 0.75500 1.21256 1.22496 1.22330 1.22275 1.01472 0.97268 0.96116 1.22477 0.79255 1.01968 0.99151 1.74554 1.18619 1.03380 1.10135 1.81978 0.96257 1.03871 1.22575 1.50624 1.06402 1.07065 1.50470 1.21615 1.00339 0.75480 0.98287 1.22154 1.03339 1.00745 0.95824 1.22164 1.03396 1.00750 0.95781 0.89138 0.91015 0.87193 0.89683 0.90881 0.91795 0.90937 0.93361 0.94634 0.92496 0.79995 0.93515 0.90724 0.93752 0.86823 0.89798 0.87425 0.91703 0.90585 0.89994 0.91756 0.89999 0.90584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.81 9.34 36.01 0.34 -0.47 16 2 C 0.12 1.44 7.02 -81.88 -0.57 0.87 16 3 C -0.10 -1.53 6.70 -83.55 -0.56 -2.09 16 4 C 0.60 10.57 7.67 -12.47 -0.10 10.47 16 5 O -0.56 -10.07 14.23 5.28 0.08 -10.00 16 6 N -0.58 -10.62 2.97 -174.01 -0.52 -11.14 16 7 C 0.12 2.07 6.17 -3.71 -0.02 2.05 16 8 C -0.13 -2.22 4.96 -26.61 -0.13 -2.35 16 9 C 0.20 3.97 0.74 -131.78 -0.10 3.87 16 10 C -0.15 -2.79 8.44 37.16 0.31 -2.48 16 11 N -0.73 -17.36 4.13 -47.20 -0.19 -17.56 16 12 C -0.32 -8.57 8.68 -15.06 -0.13 -8.70 16 13 H 0.06 1.72 6.70 -52.49 -0.35 1.37 16 14 C -0.05 -1.30 5.50 -17.43 -0.10 -1.40 16 15 N -0.95 -29.07 13.70 55.49 0.76 -28.31 16 16 Si 1.07 26.14 29.92 -169.99 -5.09 21.06 16 17 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 18 H -0.30 -6.94 7.11 56.52 0.40 -6.54 16 19 H -0.30 -6.93 7.11 56.52 0.40 -6.53 16 20 C -0.13 -2.49 4.70 -26.61 -0.13 -2.62 16 21 C 0.09 1.81 5.83 -3.71 -0.02 1.79 16 22 N -0.19 -3.28 8.77 32.85 0.29 -2.99 16 23 N -0.07 -1.01 13.67 60.35 0.82 -0.18 16 24 N -0.36 -4.02 3.28 -50.41 -0.17 -4.18 16 25 C 0.14 0.96 3.68 -67.94 -0.25 0.71 16 26 C -0.16 -0.98 9.47 37.16 0.35 -0.63 16 27 C -0.16 -0.94 9.47 37.16 0.35 -0.59 16 28 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.40 7.20 -51.93 -0.37 0.02 16 30 H 0.11 1.15 6.58 -51.92 -0.34 0.81 16 31 H 0.08 1.43 7.00 -51.93 -0.36 1.07 16 32 H 0.07 1.40 6.94 -51.93 -0.36 1.04 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 35 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 1.15 7.27 -51.93 -0.38 0.77 16 38 H 0.37 9.17 5.30 -40.82 -0.22 8.95 16 39 H 0.25 7.67 6.77 -40.82 -0.28 7.40 16 40 H 0.07 1.52 7.31 -51.93 -0.38 1.14 16 41 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.11 2.13 4.10 -81.33 -0.33 1.80 16 43 H 0.08 1.91 7.74 -51.94 -0.40 1.51 16 44 H 0.11 0.45 6.79 -51.93 -0.35 0.10 16 45 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 46 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 47 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 48 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 50 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 387.77 15.07 5.84 5.84 Total: -1.00 -33.31 387.77 -6.92 -40.23 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: -8.00 Total: 8.78 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: -0.75 Total: -1.55 kcal Atomic # 7 Polarization: -65.36 SS G_CDS: 1.00 Total: -64.36 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.08 Total: -10.00 kcal Atomic # 14 Polarization: 26.14 SS G_CDS: -5.09 Total: 21.06 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.31 -6.92 -40.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570383356.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.285 kcal (2) G-P(sol) polarization free energy of solvation -33.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds