Wall clock time and date at job start Tue Mar 31 2020 18:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36594 * 126.57951 * 2 1 4 4 C 1.47525 * 125.77091 * 0.03274 * 3 2 1 5 5 O 1.21593 * 120.00263 * 353.47838 * 4 3 2 6 6 N 1.34783 * 119.99815 * 173.47150 * 4 3 2 7 7 C 1.46925 * 120.62716 * 172.71045 * 6 4 3 8 8 C 1.53192 * 108.77081 * 126.41819 * 7 6 4 9 9 C 1.53040 * 109.31509 * 54.63560 * 8 7 6 10 10 C 1.52997 * 109.46232 * 178.62761 * 9 8 7 11 11 N 1.46496 * 109.46020 * 58.65214 * 9 8 7 12 12 C 1.36933 * 120.00161 * 180.02562 * 11 9 8 13 13 H 1.07993 * 120.00101 * 0.02562 * 12 11 9 14 14 C 1.38815 * 119.99967 * 180.02562 * 12 11 9 15 15 N 1.31621 * 120.00293 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 119.99834 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.46759 * 179.97438 * 16 14 12 18 18 H 1.48502 * 109.46709 * 299.99005 * 16 14 12 19 19 H 1.48488 * 109.47351 * 59.99436 * 16 14 12 20 20 C 1.53041 * 109.53592 * 298.63637 * 9 8 7 21 21 C 1.46924 * 120.63087 * 352.74461 * 6 4 3 22 22 N 1.34399 * 108.45688 * 179.77112 * 3 2 1 23 23 N 1.28757 * 109.52714 * 0.22505 * 22 3 2 24 24 N 1.34815 * 126.57920 * 180.16039 * 2 1 3 25 25 C 1.46497 * 126.59548 * 359.97194 * 24 2 1 26 26 C 1.52995 * 109.47090 * 120.27433 * 25 24 2 27 27 C 1.52998 * 109.47179 * 240.27401 * 25 24 2 28 28 H 1.08998 * 109.47123 * 90.02541 * 1 2 3 29 29 H 1.08997 * 109.47509 * 210.03051 * 1 2 3 30 30 H 1.09008 * 109.46969 * 330.02774 * 1 2 3 31 31 H 1.08997 * 109.58960 * 6.63407 * 7 6 4 32 32 H 1.09001 * 109.58800 * 246.20312 * 7 6 4 33 33 H 1.09003 * 109.49800 * 294.68478 * 8 7 6 34 34 H 1.08998 * 109.52451 * 174.60688 * 8 7 6 35 35 H 1.09002 * 109.47141 * 300.02827 * 10 9 8 36 36 H 1.09005 * 109.47319 * 60.02408 * 10 9 8 37 37 H 1.08998 * 109.47152 * 180.02562 * 10 9 8 38 38 H 0.97007 * 120.00261 * 0.02562 * 11 9 8 39 39 H 0.97006 * 119.99291 * 0.02562 * 15 14 12 40 40 H 1.09000 * 109.49843 * 181.31606 * 20 9 8 41 41 H 1.09005 * 109.49604 * 301.40981 * 20 9 8 42 42 H 1.08997 * 109.58937 * 353.36338 * 21 6 4 43 43 H 1.08988 * 109.59003 * 113.79572 * 21 6 4 44 44 H 1.09003 * 109.47000 * 0.27276 * 25 24 2 45 45 H 1.09000 * 109.47081 * 299.99838 * 26 25 24 46 46 H 1.08992 * 109.47512 * 59.99621 * 26 25 24 47 47 H 1.09001 * 109.47130 * 180.02562 * 26 25 24 48 48 H 1.09004 * 109.47083 * 59.99821 * 27 25 24 49 49 H 1.09001 * 109.47048 * 179.97438 * 27 25 24 50 50 H 1.09003 * 109.47052 * 299.99842 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8737 2.5027 0.0007 5 8 0.6924 2.7649 -0.1183 6 7 2.7746 3.4964 0.1333 7 6 2.3692 4.9000 -0.0230 8 6 2.8088 5.6813 1.2192 9 6 4.3103 5.4813 1.4380 10 6 4.7595 6.2877 2.6581 11 7 5.0412 5.9394 0.2540 12 6 6.4077 5.8576 0.2188 13 1 6.9465 5.4550 1.0637 14 6 7.1003 6.2922 -0.9030 15 7 6.4437 6.7824 -1.9330 16 14 8.9644 6.1800 -0.9512 17 1 9.4583 6.7044 -2.2498 18 1 9.5375 6.9840 0.1580 19 1 9.3790 4.7621 -0.8005 20 6 4.5999 3.9971 1.6733 21 6 4.1807 3.1967 0.4362 22 7 3.5983 0.6788 0.0051 23 7 3.6299 -0.6083 0.0035 24 7 2.3104 -1.0826 -0.0030 25 6 1.8864 -2.4849 -0.0064 26 6 2.4343 -3.1804 -1.2541 27 6 2.4239 -3.1832 1.2443 28 1 -0.3633 -0.0005 -1.0276 29 1 -0.3634 -0.8897 0.5143 30 1 -0.3633 0.8903 0.5134 31 1 1.2858 4.9581 -0.1267 32 1 2.8462 5.3218 -0.9077 33 1 2.2628 5.3178 2.0898 34 1 2.6001 6.7414 1.0756 35 1 4.5539 7.3450 2.4906 36 1 4.2157 5.9470 3.5392 37 1 5.8290 6.1457 2.8137 38 1 4.5573 6.3007 -0.5052 39 1 5.4757 6.8403 -1.9080 40 1 5.6661 3.8584 1.8522 41 1 4.0370 3.6494 2.5396 42 1 4.2924 2.1309 0.6355 43 1 4.8053 3.4795 -0.4109 44 1 0.7975 -2.5351 -0.0110 45 1 2.0514 -2.6829 -2.1451 46 1 3.5231 -3.1300 -1.2496 47 1 2.1184 -4.2236 -1.2568 48 1 2.0335 -2.6877 2.1333 49 1 2.1080 -4.2264 1.2420 50 1 3.5127 -3.1329 1.2489 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570383356.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:04 Heat of formation + Delta-G solvation = 57.482140 kcal Electronic energy + Delta-G solvation = -30616.807038 eV Core-core repulsion = 26680.971763 eV Total energy + Delta-G solvation = -3935.835276 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.43741 -41.13302 -39.25547 -37.44009 -36.21578 -34.43335 -33.99881 -32.66125 -31.55911 -30.57948 -29.46265 -28.53345 -28.28909 -25.82630 -25.26826 -24.85525 -24.15620 -23.05959 -21.32829 -21.07026 -19.90966 -18.92240 -18.37370 -17.46781 -17.29340 -17.17355 -16.77065 -16.00971 -15.91081 -15.50085 -15.45181 -15.28026 -15.05101 -14.88555 -14.53074 -14.22705 -14.16770 -14.00873 -13.96938 -13.65301 -13.27009 -13.25215 -13.20776 -12.93622 -12.80700 -12.69350 -12.62494 -12.54448 -12.46413 -12.21291 -12.13794 -12.02015 -11.84739 -11.55493 -11.41214 -11.15781 -11.00386 -10.93984 -10.65907 -10.26058 -9.62664 -8.97175 -8.25312 -5.17680 0.09483 0.54557 1.04031 1.58999 1.68720 1.83713 1.94987 2.13857 2.76425 3.08620 3.25191 3.48827 3.51483 3.63634 3.69017 3.79879 3.89602 3.95331 3.98266 4.08412 4.12402 4.20223 4.39292 4.43928 4.56915 4.59560 4.61076 4.62309 4.67311 4.70124 4.74301 4.80028 4.82285 4.88724 4.95493 5.00428 5.05658 5.09966 5.16193 5.17358 5.22263 5.28105 5.39554 5.50821 5.55856 5.65699 5.75621 6.34973 6.62004 6.81808 7.07840 7.21921 8.12945 8.25112 9.26657 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013969 B = 0.003356 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.021390 B = 8340.971961 C = 9367.766314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.134 3.866 3 C -0.132 4.132 4 C 0.599 3.401 5 O -0.562 6.562 6 N -0.588 5.588 7 C 0.120 3.880 8 C -0.119 4.119 9 C 0.192 3.808 10 C -0.141 4.141 11 N -0.735 5.735 12 C -0.298 4.298 13 H 0.065 0.935 14 C -0.109 4.109 15 N -0.983 5.983 16 Si 1.117 2.883 17 H -0.299 1.299 18 H -0.280 1.280 19 H -0.283 1.283 20 C -0.124 4.124 21 C 0.108 3.892 22 N -0.228 5.228 23 N -0.088 5.088 24 N -0.343 5.343 25 C 0.131 3.869 26 C -0.160 4.160 27 C -0.160 4.160 28 H 0.104 0.896 29 H 0.114 0.886 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.048 0.952 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.042 0.958 36 H 0.068 0.932 37 H 0.038 0.962 38 H 0.357 0.643 39 H 0.242 0.758 40 H 0.057 0.943 41 H 0.067 0.933 42 H 0.123 0.877 43 H 0.039 0.961 44 H 0.146 0.854 45 H 0.056 0.944 46 H 0.053 0.947 47 H 0.115 0.885 48 H 0.060 0.940 49 H 0.114 0.886 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.928 -22.284 8.042 28.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.005 4.005 3 C -0.271 4.271 4 C 0.387 3.613 5 O -0.442 6.442 6 N -0.318 5.318 7 C -0.002 4.002 8 C -0.158 4.158 9 C 0.102 3.898 10 C -0.200 4.200 11 N -0.377 5.377 12 C -0.430 4.430 13 H 0.083 0.917 14 C -0.299 4.299 15 N -0.633 5.633 16 Si 0.944 3.056 17 H -0.225 1.225 18 H -0.206 1.206 19 H -0.210 1.210 20 C -0.164 4.164 21 C -0.015 4.015 22 N -0.100 5.100 23 N -0.066 5.066 24 N -0.130 5.130 25 C 0.032 3.968 26 C -0.218 4.218 27 C -0.217 4.217 28 H 0.122 0.878 29 H 0.132 0.868 30 H 0.113 0.887 31 H 0.115 0.885 32 H 0.067 0.933 33 H 0.104 0.896 34 H 0.098 0.902 35 H 0.062 0.938 36 H 0.087 0.913 37 H 0.057 0.943 38 H 0.190 0.810 39 H 0.052 0.948 40 H 0.076 0.924 41 H 0.086 0.914 42 H 0.140 0.860 43 H 0.057 0.943 44 H 0.164 0.836 45 H 0.075 0.925 46 H 0.072 0.928 47 H 0.134 0.866 48 H 0.079 0.921 49 H 0.133 0.867 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.566 -22.404 7.267 27.180 hybrid contribution -1.683 0.585 0.285 1.805 sum -15.249 -21.818 7.551 27.670 Atomic orbital electron populations 1.20820 0.81998 1.06258 1.05711 1.22341 0.97512 0.85488 0.95164 1.21257 0.89585 0.95499 1.20783 1.17014 0.84926 0.83173 0.76208 1.90683 1.16192 1.83855 1.53440 1.47902 1.09760 1.06166 1.68011 1.21529 1.00901 0.79770 0.98048 1.22021 0.95114 1.00522 0.98103 1.19801 0.90577 0.91981 0.87402 1.22101 1.00629 0.99593 0.97723 1.42653 1.03252 1.75661 1.16128 1.20151 0.84656 1.36162 1.02057 0.91688 1.26827 1.09623 1.00413 0.93082 1.70986 1.07773 1.51778 1.32756 0.82731 0.71035 0.76450 0.75340 1.22499 1.20596 1.20985 1.22193 1.00713 0.96745 0.96789 1.22202 0.79400 1.02545 0.97393 1.74430 1.19657 1.04481 1.11437 1.81868 0.98429 1.03120 1.23224 1.51002 1.05038 1.08582 1.48376 1.22240 1.02574 0.72948 0.99013 1.22169 1.01902 1.02617 0.95107 1.22174 1.01996 1.02557 0.94996 0.87772 0.86794 0.88703 0.88508 0.93328 0.89567 0.90180 0.93841 0.91339 0.94327 0.80979 0.94773 0.92429 0.91395 0.85967 0.94289 0.83640 0.92466 0.92766 0.86640 0.92100 0.86716 0.92716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.27 9.34 71.24 0.67 -0.60 16 2 C 0.13 3.06 7.02 41.72 0.29 3.35 16 3 C -0.13 -4.18 6.70 40.82 0.27 -3.91 16 4 C 0.60 21.06 7.67 86.69 0.67 21.73 16 5 O -0.56 -19.92 14.23 -4.01 -0.06 -19.98 16 6 N -0.59 -21.77 2.97 -822.69 -2.44 -24.21 16 7 C 0.12 4.28 6.17 86.36 0.53 4.81 16 8 C -0.12 -3.97 4.96 30.67 0.15 -3.82 16 9 C 0.19 7.50 0.74 3.63 0.00 7.50 16 10 C -0.14 -5.13 8.44 71.98 0.61 -4.52 16 11 N -0.73 -36.03 4.13 -303.24 -1.25 -37.29 16 12 C -0.30 -16.44 8.68 84.03 0.73 -15.71 16 13 H 0.07 3.53 6.70 -2.91 -0.02 3.51 16 14 C -0.11 -6.38 5.50 84.86 0.47 -5.91 16 15 N -0.98 -62.65 13.70 21.65 0.30 -62.35 16 16 Si 1.12 53.82 29.92 68.60 2.05 55.87 16 17 H -0.30 -14.86 7.11 99.48 0.71 -14.15 16 18 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 19 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 20 C -0.12 -4.72 4.70 30.67 0.14 -4.57 16 21 C 0.11 4.30 5.83 86.36 0.50 4.80 16 22 N -0.23 -7.84 8.77 -50.00 -0.44 -8.28 16 23 N -0.09 -2.60 13.67 37.02 0.51 -2.09 16 24 N -0.34 -7.07 3.28 -313.40 -1.03 -8.10 16 25 C 0.13 1.32 3.68 44.99 0.17 1.48 16 26 C -0.16 -1.51 9.47 71.98 0.68 -0.83 16 27 C -0.16 -1.36 9.47 71.98 0.68 -0.68 16 28 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.11 0.65 7.20 -2.39 -0.02 0.63 16 30 H 0.09 1.74 6.58 -2.38 -0.02 1.73 16 31 H 0.10 3.21 7.00 -2.39 -0.02 3.20 16 32 H 0.05 1.96 6.94 -2.39 -0.02 1.94 16 33 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 34 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 35 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 37 H 0.04 1.52 7.27 -2.39 -0.02 1.50 16 38 H 0.36 18.71 5.30 -92.70 -0.49 18.22 16 39 H 0.24 15.37 6.77 -92.70 -0.63 14.74 16 40 H 0.06 2.36 7.31 -2.39 -0.02 2.35 16 41 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 42 H 0.12 4.75 4.10 -40.43 -0.17 4.58 16 43 H 0.04 1.88 7.74 -2.39 -0.02 1.86 16 44 H 0.15 0.43 6.79 -2.39 -0.02 0.41 16 45 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 46 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 47 H 0.12 0.33 8.14 -2.39 -0.02 0.31 16 48 H 0.06 0.58 8.14 -2.38 -0.02 0.57 16 49 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 50 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -76.12 387.77 4.64 -71.48 By element: Atomic # 1 Polarization: 31.38 SS G_CDS: 0.45 Total: 31.83 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: 6.56 Total: 3.13 kcal Atomic # 7 Polarization: -137.96 SS G_CDS: -4.36 Total: -142.32 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -0.06 Total: -19.98 kcal Atomic # 14 Polarization: 53.82 SS G_CDS: 2.05 Total: 55.87 kcal Total: -76.12 4.64 -71.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570383356.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.961 kcal (2) G-P(sol) polarization free energy of solvation -76.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds