Wall clock time and date at job start Tue Mar 31 2020 20:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36938 * 120.00258 * 2 1 4 4 H 1.07997 * 119.99892 * 199.65788 * 3 2 1 5 5 C 1.38814 * 119.99673 * 19.66048 * 3 2 1 6 6 N 1.31618 * 119.99992 * 16.11008 * 5 3 2 7 7 Si 1.86799 * 119.99738 * 196.10718 * 5 3 2 8 8 H 1.48501 * 109.47227 * 90.00137 * 7 5 3 9 9 H 1.48509 * 109.46849 * 210.00057 * 7 5 3 10 10 H 1.48500 * 109.47087 * 329.99697 * 7 5 3 11 11 C 1.46502 * 119.99789 * 180.02562 * 2 1 3 12 12 C 1.52996 * 109.47343 * 264.69847 * 11 2 1 13 13 H 1.09001 * 109.99535 * 303.50163 * 12 11 2 14 14 C 1.54318 * 109.88419 * 64.59900 * 12 11 2 15 15 C 1.55155 * 103.10545 * 141.52161 * 14 12 11 16 16 C 1.55126 * 101.48350 * 324.71831 * 15 14 12 17 17 N 1.47022 * 109.88057 * 182.40821 * 12 11 2 18 18 C 1.34773 * 125.64908 * 61.60782 * 17 12 11 19 19 O 1.21589 * 120.00258 * 5.18816 * 18 17 12 20 20 C 1.47522 * 119.99901 * 185.19309 * 18 17 12 21 21 C 1.36601 * 125.77190 * 179.71808 * 20 18 17 22 22 N 1.34812 * 106.83949 * 179.89584 * 21 20 18 23 23 C 1.46504 * 126.59534 * 180.12829 * 22 21 20 24 24 C 1.52997 * 109.46947 * 75.24439 * 23 22 21 25 25 C 1.52999 * 109.47280 * 195.24680 * 23 22 21 26 26 C 1.53001 * 109.46789 * 315.24652 * 23 22 21 27 27 N 1.40210 * 106.81124 * 0.35542 * 22 21 20 28 28 N 1.28755 * 108.36887 * 359.77182 * 27 22 21 29 29 H 1.09004 * 109.47394 * 274.16716 * 1 2 3 30 30 H 1.09005 * 109.47544 * 34.16530 * 1 2 3 31 31 H 1.09002 * 109.47653 * 154.16768 * 1 2 3 32 32 H 0.97008 * 120.00030 * 180.02562 * 6 5 3 33 33 H 1.09003 * 109.46823 * 144.69371 * 11 2 1 34 34 H 1.09001 * 109.47190 * 24.69858 * 11 2 1 35 35 H 1.09005 * 110.71952 * 259.97378 * 14 12 11 36 36 H 1.08998 * 110.71922 * 23.06611 * 14 12 11 37 37 H 1.09007 * 110.99986 * 82.65747 * 15 14 12 38 38 H 1.08997 * 111.00486 * 206.51389 * 15 14 12 39 39 H 1.08997 * 110.20955 * 277.95468 * 16 15 14 40 40 H 1.09001 * 110.51259 * 155.74747 * 16 15 14 41 41 H 1.08002 * 126.57844 * 0.02907 * 21 20 18 42 42 H 1.08993 * 109.47214 * 59.99959 * 24 23 22 43 43 H 1.09001 * 109.47100 * 180.02562 * 24 23 22 44 44 H 1.09005 * 109.47201 * 299.99809 * 24 23 22 45 45 H 1.08999 * 109.47121 * 59.99503 * 25 23 22 46 46 H 1.08999 * 109.47183 * 180.02562 * 25 23 22 47 47 H 1.09001 * 109.46989 * 300.00067 * 25 23 22 48 48 H 1.08998 * 109.47211 * 59.99960 * 26 23 22 49 49 H 1.09007 * 109.46762 * 180.02562 * 26 23 22 50 50 H 1.09001 * 109.47052 * 299.99552 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1825 1.2131 -0.3146 5 6 1.5163 2.3530 0.4045 6 7 0.3875 2.2896 1.0783 7 14 2.2662 4.0135 -0.0075 8 1 1.7464 4.4800 -1.3180 9 1 1.9043 4.9952 1.0464 10 1 3.7440 3.8854 -0.0782 11 6 2.1974 -1.2688 -0.0006 12 6 2.5678 -1.6445 1.4355 13 1 3.1432 -0.8405 1.8945 14 6 1.2877 -1.9083 2.2559 15 6 1.6853 -3.1115 3.1512 16 6 2.6127 -3.9116 2.1993 17 7 3.3533 -2.8873 1.4404 18 6 4.5515 -3.0616 0.8486 19 8 5.1149 -2.1187 0.3270 20 6 5.1795 -4.3964 0.8335 21 6 6.3824 -4.7065 0.2652 22 7 6.5858 -6.0226 0.4752 23 6 7.7472 -6.8061 0.0468 24 6 8.9394 -6.4868 0.9510 25 6 7.4196 -8.2976 0.1425 26 6 8.0954 -6.4522 -1.4004 27 7 5.4697 -6.4983 1.1779 28 7 4.6624 -5.5142 1.3716 29 1 -0.3634 0.0747 1.0250 30 1 -0.3634 0.8503 -0.5771 31 1 -0.3634 -0.9250 -0.4478 32 1 -0.0554 3.1052 1.3606 33 1 3.1054 -1.1638 -0.5945 34 1 1.5705 -2.0500 -0.4303 35 1 1.0348 -1.0408 2.8656 36 1 0.4576 -2.1727 1.6009 37 1 2.2289 -2.7778 4.0352 38 1 0.8092 -3.6967 3.4308 39 1 2.0184 -4.5278 1.5246 40 1 3.3024 -4.5327 2.7709 41 1 7.0444 -4.0273 -0.2512 42 1 8.6913 -6.7388 1.9820 43 1 9.8036 -7.0694 0.6320 44 1 9.1728 -5.4242 0.8828 45 1 6.5702 -8.5250 -0.5016 46 1 8.2839 -8.8805 -0.1758 47 1 7.1715 -8.5497 1.1735 48 1 8.3288 -5.3896 -1.4685 49 1 8.9593 -7.0355 -1.7192 50 1 7.2460 -6.6797 -2.0445 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570532803.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:37 Heat of formation + Delta-G solvation = 91.580726 kcal Electronic energy + Delta-G solvation = -29976.231697 eV Core-core repulsion = 26041.875047 eV Total energy + Delta-G solvation = -3934.356650 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -42.34535 -39.55857 -37.72993 -37.04613 -35.17507 -32.30127 -31.66700 -31.18348 -30.45715 -28.81045 -28.05858 -27.97187 -25.94517 -25.01790 -24.20991 -23.67808 -21.89714 -20.96945 -20.70227 -20.16714 -18.61507 -17.29566 -16.56988 -16.41192 -16.15971 -15.89916 -15.17721 -14.76342 -14.63694 -14.57953 -14.37786 -13.76746 -13.50297 -13.28393 -13.18920 -13.05226 -12.98034 -12.83383 -12.78107 -12.52604 -12.37012 -12.24762 -11.93521 -11.77510 -11.68875 -11.57396 -11.27831 -11.26161 -10.78337 -10.61803 -10.52529 -10.44382 -10.40200 -10.20350 -9.99912 -9.85108 -9.65610 -9.58131 -9.29597 -8.46221 -8.14738 -6.66762 -5.63384 -3.03882 1.08483 1.80514 1.81296 3.29737 3.47412 3.53216 3.55712 3.56265 3.83562 4.09361 4.17439 4.21588 4.57551 4.63219 4.80706 4.87939 4.94018 5.02515 5.03989 5.05628 5.09035 5.19788 5.25305 5.31802 5.38632 5.42827 5.51595 5.55917 5.60472 5.74946 5.76085 5.86801 5.99306 6.11099 6.12982 6.29451 6.29942 6.47130 6.56032 6.66208 6.79767 6.82234 6.98683 7.17051 7.46180 7.78016 7.86798 7.95408 7.98846 8.47566 8.54174 9.34937 9.98242 10.45894 11.42498 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.018225 B = 0.002770 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.991763 B =10105.376286 C =11088.980724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.595 5.595 3 C -0.246 4.246 4 H 0.071 0.929 5 C -0.001 4.001 6 N -0.909 5.909 7 Si 0.902 3.098 8 H -0.289 1.289 9 H -0.293 1.293 10 H -0.279 1.279 11 C 0.148 3.852 12 C 0.117 3.883 13 H 0.079 0.921 14 C -0.110 4.110 15 C -0.138 4.138 16 C 0.107 3.893 17 N -0.596 5.596 18 C 0.609 3.391 19 O -0.534 6.534 20 C -0.089 4.089 21 C 0.089 3.911 22 N -0.353 5.353 23 C 0.170 3.830 24 C -0.161 4.161 25 C -0.148 4.148 26 C -0.164 4.164 27 N -0.071 5.071 28 N -0.205 5.205 29 H 0.030 0.970 30 H 0.044 0.956 31 H -0.005 1.005 32 H 0.250 0.750 33 H 0.053 0.947 34 H 0.037 0.963 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.065 0.935 40 H 0.083 0.917 41 H 0.200 0.800 42 H 0.068 0.932 43 H 0.084 0.916 44 H 0.068 0.932 45 H 0.069 0.931 46 H 0.079 0.921 47 H 0.074 0.926 48 H 0.071 0.929 49 H 0.086 0.914 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.966 -22.600 -0.090 26.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.318 5.318 3 C -0.376 4.376 4 H 0.089 0.911 5 C -0.199 4.199 6 N -0.555 5.555 7 Si 0.732 3.268 8 H -0.217 1.217 9 H -0.219 1.219 10 H -0.205 1.205 11 C 0.019 3.981 12 C 0.013 3.987 13 H 0.097 0.903 14 C -0.148 4.148 15 C -0.176 4.176 16 C -0.017 4.017 17 N -0.329 5.329 18 C 0.394 3.606 19 O -0.410 6.410 20 C -0.228 4.228 21 C -0.067 4.067 22 N -0.140 5.140 23 C 0.088 3.912 24 C -0.219 4.219 25 C -0.205 4.205 26 C -0.222 4.222 27 N -0.051 5.051 28 N -0.078 5.078 29 H 0.048 0.952 30 H 0.063 0.937 31 H 0.014 0.986 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.056 0.944 35 H 0.102 0.898 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.096 0.904 39 H 0.083 0.917 40 H 0.101 0.899 41 H 0.217 0.783 42 H 0.088 0.912 43 H 0.103 0.897 44 H 0.087 0.913 45 H 0.088 0.912 46 H 0.098 0.902 47 H 0.093 0.907 48 H 0.090 0.910 49 H 0.105 0.895 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 13.584 -23.199 0.272 26.885 hybrid contribution 0.886 1.741 -0.524 2.023 sum 14.469 -21.458 -0.253 25.881 Atomic orbital electron populations 1.20841 0.82494 0.95527 0.99300 1.43958 1.01823 1.00548 1.85472 1.19290 0.96670 0.84673 1.36923 0.91119 1.24909 0.97981 0.98166 0.98817 1.70091 1.19158 1.26498 1.39763 0.86275 0.78772 0.84201 0.77517 1.21665 1.21936 1.20478 1.21125 0.96094 0.88195 0.92662 1.22715 0.90862 0.84418 1.00752 0.90277 1.22541 0.96768 0.97802 0.97679 1.22886 0.99137 0.97616 0.97983 1.22410 0.94733 0.90647 0.93862 1.48489 1.18031 1.14661 1.51734 1.16348 0.80064 0.85070 0.79104 1.90839 1.62635 1.40655 1.46894 1.21582 0.96595 0.95232 1.09398 1.23223 0.98164 0.86242 0.99101 1.50775 1.17128 1.07065 1.39005 1.21061 0.82092 0.92513 0.95584 1.22286 0.96376 1.03279 0.99987 1.21984 1.02918 0.91274 1.04369 1.22307 1.03436 1.03421 0.93019 1.81917 0.91428 1.17839 1.13877 1.74725 1.21491 0.97437 1.14168 0.95211 0.93744 0.98610 0.93944 0.92893 0.94416 0.89817 0.91028 0.91225 0.90379 0.91681 0.89883 0.78333 0.91248 0.89717 0.91301 0.91226 0.90237 0.90663 0.91024 0.89474 0.91097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.06 7.93 59.84 0.47 4.54 16 2 N -0.60 -15.49 2.77 -181.12 -0.50 -15.99 16 3 C -0.25 -7.04 9.67 -15.06 -0.15 -7.19 16 4 H 0.07 2.06 7.88 -52.49 -0.41 1.65 16 5 C 0.00 -0.03 5.03 -17.43 -0.09 -0.12 16 6 N -0.91 -26.72 10.70 55.49 0.59 -26.12 16 7 Si 0.90 22.69 29.58 -169.99 -5.03 17.66 16 8 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 9 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 10 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 11 C 0.15 3.34 5.12 -4.04 -0.02 3.32 16 12 C 0.12 2.39 3.08 -66.96 -0.21 2.18 16 13 H 0.08 1.88 8.14 -51.93 -0.42 1.46 16 14 C -0.11 -1.97 5.63 -24.90 -0.14 -2.11 16 15 C -0.14 -1.95 7.11 -24.47 -0.17 -2.13 16 16 C 0.11 1.58 5.95 -2.41 -0.01 1.57 16 17 N -0.60 -10.70 3.07 -164.11 -0.50 -11.20 16 18 C 0.61 11.12 7.58 -12.48 -0.09 11.02 16 19 O -0.53 -11.34 16.06 5.29 0.08 -11.25 16 20 C -0.09 -1.33 6.83 -83.55 -0.57 -1.90 16 21 C 0.09 1.04 10.43 -16.83 -0.18 0.87 16 22 N -0.35 -3.59 3.44 -48.35 -0.17 -3.75 16 23 C 0.17 1.07 1.25 -131.82 -0.16 0.90 16 24 C -0.16 -0.80 8.74 37.16 0.32 -0.48 16 25 C -0.15 -0.81 8.11 37.16 0.30 -0.51 16 26 C -0.16 -0.77 8.30 37.16 0.31 -0.46 16 27 N -0.07 -0.92 12.91 60.35 0.78 -0.14 16 28 N -0.20 -2.99 9.54 32.85 0.31 -2.68 16 29 H 0.03 0.77 7.34 -51.93 -0.38 0.39 16 30 H 0.04 1.20 7.13 -51.93 -0.37 0.83 16 31 H 0.00 -0.10 7.80 -51.93 -0.41 -0.51 16 32 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 33 H 0.05 1.29 6.89 -51.93 -0.36 0.94 16 34 H 0.04 0.80 7.74 -51.93 -0.40 0.40 16 35 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 36 H 0.07 1.29 7.24 -51.93 -0.38 0.91 16 37 H 0.07 0.97 8.14 -51.92 -0.42 0.54 16 38 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.08 1.19 6.47 -51.93 -0.34 0.85 16 41 H 0.20 1.84 7.62 -52.49 -0.40 1.44 16 42 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 44 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 45 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 47 H 0.07 0.49 8.06 -51.93 -0.42 0.07 16 48 H 0.07 0.33 7.43 -51.93 -0.39 -0.06 16 49 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 50 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 397.78 15.07 5.99 5.99 Total: -1.00 -33.74 397.78 -7.27 -41.02 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -8.45 Total: -3.04 kcal Atomic # 6 Polarization: 9.89 SS G_CDS: -0.39 Total: 9.50 kcal Atomic # 7 Polarization: -60.40 SS G_CDS: 0.52 Total: -59.88 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.08 Total: -11.25 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.03 Total: 17.66 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.74 -7.27 -41.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570532803.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.598 kcal (2) G-P(sol) polarization free energy of solvation -33.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds