Wall clock time and date at job start Tue Mar 31 2020 20:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36938 * 120.00258 * 2 1 4 4 H 1.07997 * 119.99892 * 199.65788 * 3 2 1 5 5 C 1.38814 * 119.99673 * 19.66048 * 3 2 1 6 6 N 1.31618 * 119.99992 * 16.11008 * 5 3 2 7 7 Si 1.86799 * 119.99738 * 196.10718 * 5 3 2 8 8 H 1.48501 * 109.47227 * 90.00137 * 7 5 3 9 9 H 1.48509 * 109.46849 * 210.00057 * 7 5 3 10 10 H 1.48500 * 109.47087 * 329.99697 * 7 5 3 11 11 C 1.46502 * 119.99789 * 180.02562 * 2 1 3 12 12 C 1.52996 * 109.47343 * 264.69847 * 11 2 1 13 13 H 1.09001 * 109.99535 * 303.50163 * 12 11 2 14 14 C 1.54318 * 109.88419 * 64.59900 * 12 11 2 15 15 C 1.55155 * 103.10545 * 141.52161 * 14 12 11 16 16 C 1.55126 * 101.48350 * 324.71831 * 15 14 12 17 17 N 1.47022 * 109.88057 * 182.40821 * 12 11 2 18 18 C 1.34773 * 125.64908 * 61.60782 * 17 12 11 19 19 O 1.21589 * 120.00258 * 5.18816 * 18 17 12 20 20 C 1.47522 * 119.99901 * 185.19309 * 18 17 12 21 21 C 1.36601 * 125.77190 * 179.71808 * 20 18 17 22 22 N 1.34812 * 106.83949 * 179.89584 * 21 20 18 23 23 C 1.46504 * 126.59534 * 180.12829 * 22 21 20 24 24 C 1.52997 * 109.46947 * 75.24439 * 23 22 21 25 25 C 1.52999 * 109.47280 * 195.24680 * 23 22 21 26 26 C 1.53001 * 109.46789 * 315.24652 * 23 22 21 27 27 N 1.40210 * 106.81124 * 0.35542 * 22 21 20 28 28 N 1.28755 * 108.36887 * 359.77182 * 27 22 21 29 29 H 1.09004 * 109.47394 * 274.16716 * 1 2 3 30 30 H 1.09005 * 109.47544 * 34.16530 * 1 2 3 31 31 H 1.09002 * 109.47653 * 154.16768 * 1 2 3 32 32 H 0.97008 * 120.00030 * 180.02562 * 6 5 3 33 33 H 1.09003 * 109.46823 * 144.69371 * 11 2 1 34 34 H 1.09001 * 109.47190 * 24.69858 * 11 2 1 35 35 H 1.09005 * 110.71952 * 259.97378 * 14 12 11 36 36 H 1.08998 * 110.71922 * 23.06611 * 14 12 11 37 37 H 1.09007 * 110.99986 * 82.65747 * 15 14 12 38 38 H 1.08997 * 111.00486 * 206.51389 * 15 14 12 39 39 H 1.08997 * 110.20955 * 277.95468 * 16 15 14 40 40 H 1.09001 * 110.51259 * 155.74747 * 16 15 14 41 41 H 1.08002 * 126.57844 * 0.02907 * 21 20 18 42 42 H 1.08993 * 109.47214 * 59.99959 * 24 23 22 43 43 H 1.09001 * 109.47100 * 180.02562 * 24 23 22 44 44 H 1.09005 * 109.47201 * 299.99809 * 24 23 22 45 45 H 1.08999 * 109.47121 * 59.99503 * 25 23 22 46 46 H 1.08999 * 109.47183 * 180.02562 * 25 23 22 47 47 H 1.09001 * 109.46989 * 300.00067 * 25 23 22 48 48 H 1.08998 * 109.47211 * 59.99960 * 26 23 22 49 49 H 1.09007 * 109.46762 * 180.02562 * 26 23 22 50 50 H 1.09001 * 109.47052 * 299.99552 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1825 1.2131 -0.3146 5 6 1.5163 2.3530 0.4045 6 7 0.3875 2.2896 1.0783 7 14 2.2662 4.0135 -0.0075 8 1 1.7464 4.4800 -1.3180 9 1 1.9043 4.9952 1.0464 10 1 3.7440 3.8854 -0.0782 11 6 2.1974 -1.2688 -0.0006 12 6 2.5678 -1.6445 1.4355 13 1 3.1432 -0.8405 1.8945 14 6 1.2877 -1.9083 2.2559 15 6 1.6853 -3.1115 3.1512 16 6 2.6127 -3.9116 2.1993 17 7 3.3533 -2.8873 1.4404 18 6 4.5515 -3.0616 0.8486 19 8 5.1149 -2.1187 0.3270 20 6 5.1795 -4.3964 0.8335 21 6 6.3824 -4.7065 0.2652 22 7 6.5858 -6.0226 0.4752 23 6 7.7472 -6.8061 0.0468 24 6 8.9394 -6.4868 0.9510 25 6 7.4196 -8.2976 0.1425 26 6 8.0954 -6.4522 -1.4004 27 7 5.4697 -6.4983 1.1779 28 7 4.6624 -5.5142 1.3716 29 1 -0.3634 0.0747 1.0250 30 1 -0.3634 0.8503 -0.5771 31 1 -0.3634 -0.9250 -0.4478 32 1 -0.0554 3.1052 1.3606 33 1 3.1054 -1.1638 -0.5945 34 1 1.5705 -2.0500 -0.4303 35 1 1.0348 -1.0408 2.8656 36 1 0.4576 -2.1727 1.6009 37 1 2.2289 -2.7778 4.0352 38 1 0.8092 -3.6967 3.4308 39 1 2.0184 -4.5278 1.5246 40 1 3.3024 -4.5327 2.7709 41 1 7.0444 -4.0273 -0.2512 42 1 8.6913 -6.7388 1.9820 43 1 9.8036 -7.0694 0.6320 44 1 9.1728 -5.4242 0.8828 45 1 6.5702 -8.5250 -0.5016 46 1 8.2839 -8.8805 -0.1758 47 1 7.1715 -8.5497 1.1735 48 1 8.3288 -5.3896 -1.4685 49 1 8.9593 -7.0355 -1.7192 50 1 7.2460 -6.6797 -2.0445 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570532803.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:35 Heat of formation + Delta-G solvation = 70.403135 kcal Electronic energy + Delta-G solvation = -29977.150026 eV Core-core repulsion = 26041.875047 eV Total energy + Delta-G solvation = -3935.274979 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.32687 -41.00129 -38.69087 -38.26010 -37.10566 -33.62330 -33.10322 -32.67684 -31.63226 -30.45837 -28.45514 -28.41801 -27.99242 -26.78579 -25.42089 -24.69842 -23.27885 -22.70253 -21.77680 -21.41243 -19.89789 -18.69596 -18.18888 -17.72207 -17.32626 -16.99986 -16.72164 -16.20907 -15.72712 -15.57960 -15.38019 -15.12727 -15.08133 -14.81429 -14.78000 -14.31685 -13.91860 -13.63928 -13.60827 -13.39513 -13.38296 -13.27816 -13.17810 -13.01829 -12.77868 -12.77633 -12.53095 -12.44717 -12.42479 -12.32924 -12.02303 -12.00013 -11.95535 -11.75527 -11.63147 -11.49202 -11.25440 -11.11498 -10.62040 -10.37592 -9.68517 -8.77760 -7.83434 -5.26657 0.13717 0.63100 1.02624 1.45232 1.45823 1.55475 1.93922 2.22204 2.52396 3.10442 3.23470 3.29675 3.59118 3.65331 3.67586 3.77258 3.82254 3.88093 3.97879 4.09036 4.17774 4.34611 4.44592 4.48910 4.53196 4.57001 4.60177 4.67644 4.72142 4.79539 4.80347 4.83526 4.83992 4.94509 5.01189 5.07370 5.08230 5.13401 5.18832 5.18973 5.27791 5.34933 5.41331 5.51436 5.55203 5.64179 5.74335 6.31571 6.53665 6.85476 7.12100 7.16859 7.86880 8.29011 9.20070 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.018225 B = 0.002770 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.991763 B =10105.376286 C =11088.980724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.609 5.609 3 C -0.261 4.261 4 H 0.055 0.945 5 C -0.046 4.046 6 N -0.929 5.929 7 Si 0.963 3.037 8 H -0.284 1.284 9 H -0.290 1.290 10 H -0.277 1.277 11 C 0.154 3.846 12 C 0.127 3.873 13 H 0.035 0.965 14 C -0.103 4.103 15 C -0.123 4.123 16 C 0.110 3.890 17 N -0.600 5.600 18 C 0.605 3.395 19 O -0.575 6.575 20 C -0.115 4.115 21 C 0.105 3.895 22 N -0.337 5.337 23 C 0.159 3.841 24 C -0.158 4.158 25 C -0.146 4.146 26 C -0.162 4.162 27 N -0.079 5.079 28 N -0.217 5.217 29 H 0.016 0.984 30 H 0.017 0.983 31 H 0.028 0.972 32 H 0.249 0.751 33 H 0.028 0.972 34 H 0.056 0.944 35 H 0.059 0.941 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.112 0.888 39 H 0.076 0.924 40 H 0.092 0.908 41 H 0.222 0.778 42 H 0.056 0.944 43 H 0.114 0.886 44 H 0.066 0.934 45 H 0.057 0.943 46 H 0.110 0.890 47 H 0.063 0.937 48 H 0.073 0.927 49 H 0.116 0.884 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.341 -24.888 -0.314 29.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.332 5.332 3 C -0.391 4.391 4 H 0.073 0.927 5 C -0.242 4.242 6 N -0.576 5.576 7 Si 0.792 3.208 8 H -0.211 1.211 9 H -0.216 1.216 10 H -0.203 1.203 11 C 0.027 3.973 12 C 0.022 3.978 13 H 0.053 0.947 14 C -0.141 4.141 15 C -0.160 4.160 16 C -0.012 4.012 17 N -0.332 5.332 18 C 0.393 3.607 19 O -0.454 6.454 20 C -0.254 4.254 21 C -0.053 4.053 22 N -0.123 5.123 23 C 0.078 3.922 24 C -0.216 4.216 25 C -0.203 4.203 26 C -0.220 4.220 27 N -0.059 5.059 28 N -0.090 5.090 29 H 0.034 0.966 30 H 0.036 0.964 31 H 0.047 0.953 32 H 0.059 0.941 33 H 0.046 0.954 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.131 0.869 39 H 0.094 0.906 40 H 0.111 0.889 41 H 0.238 0.762 42 H 0.075 0.925 43 H 0.133 0.867 44 H 0.086 0.914 45 H 0.076 0.924 46 H 0.129 0.871 47 H 0.082 0.918 48 H 0.092 0.908 49 H 0.134 0.866 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 14.969 -25.560 0.058 29.621 hybrid contribution 0.587 2.323 -0.505 2.448 sum 15.556 -23.237 -0.447 27.967 Atomic orbital electron populations 1.20628 0.81854 0.95945 0.98224 1.44082 1.02368 1.00943 1.85791 1.19368 0.96363 0.86234 1.37148 0.92672 1.25586 0.98656 1.01066 0.98852 1.70218 1.20042 1.27052 1.40292 0.85329 0.78026 0.80197 0.77290 1.21062 1.21597 1.20268 1.21063 0.95002 0.87388 0.93853 1.22241 0.91848 0.84695 0.99061 0.94654 1.22394 0.95314 0.98645 0.97778 1.22887 1.00229 0.95874 0.97057 1.22557 0.94754 0.89981 0.93878 1.48514 1.18170 1.14369 1.52116 1.16810 0.79815 0.85988 0.78075 1.90804 1.63690 1.42336 1.48567 1.21210 0.98090 0.94023 1.12109 1.23497 0.97153 0.87018 0.97675 1.51152 1.17157 1.06737 1.37275 1.21604 0.81061 0.92565 0.96963 1.22312 0.96570 1.03763 0.98978 1.22016 1.03891 0.90950 1.03483 1.22355 1.04160 1.04142 0.91348 1.81834 0.92181 1.17551 1.14308 1.74674 1.22294 0.97371 1.14702 0.96603 0.96384 0.95340 0.94137 0.95388 0.92596 0.92203 0.90640 0.90901 0.86934 0.90562 0.88950 0.76167 0.92462 0.86724 0.91448 0.92351 0.87119 0.91828 0.90823 0.86572 0.92133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.98 7.93 127.77 1.01 9.99 16 2 N -0.61 -32.55 2.77 -726.93 -2.01 -34.57 16 3 C -0.26 -15.46 9.67 84.03 0.81 -14.65 16 4 H 0.06 3.37 7.88 -2.91 -0.02 3.35 16 5 C -0.05 -2.70 5.03 84.86 0.43 -2.27 16 6 N -0.93 -55.70 10.70 21.65 0.23 -55.47 16 7 Si 0.96 47.52 29.58 68.60 2.03 49.55 16 8 H -0.28 -13.70 7.11 99.48 0.71 -12.99 16 9 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 10 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 11 C 0.15 7.19 5.12 86.38 0.44 7.63 16 12 C 0.13 5.37 3.08 45.34 0.14 5.51 16 13 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 14 C -0.10 -3.70 5.63 31.78 0.18 -3.52 16 15 C -0.12 -3.26 7.11 32.06 0.23 -3.03 16 16 C 0.11 3.12 5.95 86.93 0.52 3.64 16 17 N -0.60 -21.80 3.07 -791.38 -2.43 -24.22 16 18 C 0.61 22.64 7.58 86.69 0.66 23.30 16 19 O -0.57 -25.46 16.06 -4.00 -0.06 -25.53 16 20 C -0.11 -3.42 6.83 40.82 0.28 -3.14 16 21 C 0.10 2.33 10.43 83.85 0.87 3.21 16 22 N -0.34 -6.33 3.44 -306.89 -1.06 -7.39 16 23 C 0.16 1.60 1.25 3.60 0.00 1.60 16 24 C -0.16 -1.13 8.74 71.98 0.63 -0.50 16 25 C -0.15 -1.24 8.11 71.98 0.58 -0.66 16 26 C -0.16 -1.05 8.30 71.98 0.60 -0.45 16 27 N -0.08 -1.95 12.91 37.02 0.48 -1.47 16 28 N -0.22 -6.16 9.54 -49.99 -0.48 -6.63 16 29 H 0.02 0.84 7.34 -2.38 -0.02 0.82 16 30 H 0.02 0.97 7.13 -2.38 -0.02 0.95 16 31 H 0.03 1.22 7.80 -2.39 -0.02 1.20 16 32 H 0.25 14.47 8.31 -92.70 -0.77 13.70 16 33 H 0.03 1.43 6.89 -2.39 -0.02 1.41 16 34 H 0.06 2.37 7.74 -2.39 -0.02 2.35 16 35 H 0.06 2.44 8.14 -2.38 -0.02 2.42 16 36 H 0.07 2.64 7.24 -2.39 -0.02 2.63 16 37 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 38 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.09 2.50 6.47 -2.39 -0.02 2.49 16 41 H 0.22 3.79 7.62 -2.91 -0.02 3.77 16 42 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 43 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16 44 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 45 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 46 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 47 H 0.06 0.71 8.06 -2.39 -0.02 0.69 16 48 H 0.07 0.48 7.43 -2.39 -0.02 0.46 16 49 H 0.12 0.12 8.14 -2.38 -0.02 0.10 16 50 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 Total: -1.00 -76.33 397.78 5.00 -71.33 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: 0.91 Total: 7.74 kcal Atomic # 6 Polarization: 19.28 SS G_CDS: 7.38 Total: 26.66 kcal Atomic # 7 Polarization: -124.49 SS G_CDS: -5.26 Total: -129.75 kcal Atomic # 8 Polarization: -25.46 SS G_CDS: -0.06 Total: -25.53 kcal Atomic # 14 Polarization: 47.52 SS G_CDS: 2.03 Total: 49.55 kcal Total: -76.33 5.00 -71.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570532803.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.731 kcal (2) G-P(sol) polarization free energy of solvation -76.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds