Wall clock time and date at job start Tue Mar 31 2020 20:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36935 * 120.00476 * 2 1 4 4 H 1.08000 * 120.00481 * 183.57026 * 3 2 1 5 5 C 1.38818 * 119.99568 * 3.56123 * 3 2 1 6 6 N 1.31616 * 119.99841 * 352.50691 * 5 3 2 7 7 Si 1.86799 * 119.99773 * 172.77830 * 5 3 2 8 8 H 1.48502 * 109.47370 * 0.02562 * 7 5 3 9 9 H 1.48500 * 109.47198 * 120.00452 * 7 5 3 10 10 H 1.48501 * 109.47094 * 240.00365 * 7 5 3 11 11 C 1.46506 * 119.99943 * 179.97438 * 2 1 3 12 12 C 1.53004 * 109.46944 * 267.35243 * 11 2 1 13 13 H 1.08989 * 109.87678 * 54.26357 * 12 11 2 14 14 C 1.54330 * 109.87814 * 293.24458 * 12 11 2 15 15 C 1.55154 * 102.94085 * 218.38902 * 14 12 11 16 16 C 1.54911 * 101.58095 * 35.51082 * 15 14 12 17 17 N 1.47021 * 109.88301 * 175.44380 * 12 11 2 18 18 C 1.34773 * 125.64742 * 298.33595 * 17 12 11 19 19 O 1.21594 * 119.99955 * 4.61508 * 18 17 12 20 20 C 1.47524 * 120.00218 * 184.61721 * 18 17 12 21 21 C 1.36596 * 125.76748 * 179.71315 * 20 18 17 22 22 N 1.34824 * 106.83690 * 179.90010 * 21 20 18 23 23 C 1.46497 * 126.59463 * 180.13187 * 22 21 20 24 24 C 1.53002 * 109.46860 * 75.29592 * 23 22 21 25 25 C 1.53006 * 109.46879 * 195.28990 * 23 22 21 26 26 C 1.52990 * 109.47077 * 315.29167 * 23 22 21 27 27 N 1.40210 * 106.80686 * 0.35458 * 22 21 20 28 28 N 1.28763 * 108.37097 * 359.77480 * 27 22 21 29 29 H 1.09001 * 109.46654 * 62.11338 * 1 2 3 30 30 H 1.09006 * 109.47175 * 182.11177 * 1 2 3 31 31 H 1.08995 * 109.47262 * 302.11330 * 1 2 3 32 32 H 0.97006 * 119.99799 * 179.97438 * 6 5 3 33 33 H 1.09000 * 109.47015 * 27.34660 * 11 2 1 34 34 H 1.09003 * 109.47170 * 147.34954 * 11 2 1 35 35 H 1.09001 * 110.72196 * 336.75740 * 14 12 11 36 36 H 1.09004 * 110.71422 * 100.03076 * 14 12 11 37 37 H 1.09007 * 111.00123 * 153.57759 * 15 14 12 38 38 H 1.08996 * 111.00905 * 277.43096 * 15 14 12 39 39 H 1.08996 * 110.36856 * 81.82385 * 16 15 14 40 40 H 1.09001 * 110.36099 * 204.15162 * 16 15 14 41 41 H 1.07994 * 126.58644 * 0.04064 * 21 20 18 42 42 H 1.08991 * 109.47627 * 60.00218 * 24 23 22 43 43 H 1.09005 * 109.46867 * 179.97438 * 24 23 22 44 44 H 1.09003 * 109.47079 * 299.99318 * 24 23 22 45 45 H 1.09001 * 109.46530 * 60.00213 * 25 23 22 46 46 H 1.09005 * 109.46885 * 180.02562 * 25 23 22 47 47 H 1.09001 * 109.47371 * 300.00262 * 25 23 22 48 48 H 1.09003 * 109.47376 * 60.00367 * 26 23 22 49 49 H 1.09005 * 109.47064 * 179.97438 * 26 23 22 50 50 H 1.09003 * 109.47370 * 299.99708 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.2282 1.1867 -0.0582 5 6 1.4577 2.3869 0.0747 6 7 0.1438 2.3952 -0.0032 7 14 2.3916 3.9918 0.2781 8 1 3.8492 3.7130 0.3324 9 1 2.1011 4.8829 -0.8738 10 1 1.9669 4.6555 1.5368 11 6 2.1975 -1.2688 0.0006 12 6 2.5102 -1.6765 1.4418 13 1 1.5919 -1.6972 2.0285 14 6 3.5087 -0.6781 2.0646 15 6 4.4296 -1.5925 2.9149 16 6 4.4984 -2.8671 2.0371 17 7 3.1487 -3.0007 1.4595 18 6 2.5921 -4.1470 1.0206 19 8 1.5008 -4.1267 0.4846 20 6 3.3067 -5.4263 1.1905 21 6 2.8525 -6.6530 0.7969 22 7 3.8032 -7.5478 1.1334 23 6 3.7606 -8.9944 0.9060 24 6 4.0235 -9.2862 -0.5727 25 6 4.8323 -9.6764 1.7588 26 6 2.3816 -9.5313 1.2945 27 7 4.8381 -6.8283 1.7474 28 7 4.5121 -5.5827 1.7639 29 1 -0.3633 0.4807 -0.9084 30 1 -0.3634 -1.0270 0.0379 31 1 -0.3633 0.5463 0.8704 32 1 -0.3398 3.2345 0.0494 33 1 1.5886 -2.0400 -0.4712 34 1 3.1285 -1.1511 -0.5539 35 1 4.0805 -0.1695 1.2884 36 1 2.9899 0.0420 2.6974 37 1 5.4175 -1.1479 3.0360 38 1 3.9789 -1.8090 3.8834 39 1 5.2389 -2.7439 1.2468 40 1 4.7368 -3.7368 2.6494 41 1 1.9133 -6.8651 0.3079 42 1 5.0059 -8.9037 -0.8495 43 1 3.9923 -10.3626 -0.7418 44 1 3.2600 -8.8003 -1.1803 45 1 4.6449 -9.4685 2.8123 46 1 4.8009 -10.7528 1.5893 47 1 5.8147 -9.2939 1.4821 48 1 1.6181 -9.0454 0.6870 49 1 2.3498 -10.6076 1.1249 50 1 2.1943 -9.3234 2.3480 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570532804.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:44 Heat of formation + Delta-G solvation = 99.956944 kcal Electronic energy + Delta-G solvation = -29930.342769 eV Core-core repulsion = 25996.349339 eV Total energy + Delta-G solvation = -3933.993430 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 2.19 seconds Orbital eigenvalues (eV) -42.38629 -39.61838 -37.75835 -37.08780 -35.20558 -32.33922 -31.69685 -31.22296 -30.46650 -28.77331 -28.08336 -27.99647 -25.81497 -25.10203 -24.22418 -23.70173 -21.88528 -21.07706 -20.72350 -20.06357 -18.65924 -17.30236 -16.83206 -16.35786 -16.25890 -15.89064 -15.07689 -14.86310 -14.68939 -14.59371 -14.41137 -13.85724 -13.54751 -13.32588 -13.17723 -13.01295 -12.86956 -12.82948 -12.68013 -12.53672 -12.39686 -12.27155 -11.97640 -11.91448 -11.68885 -11.60455 -11.33189 -11.05602 -10.83220 -10.69155 -10.51762 -10.44978 -10.35871 -10.16384 -10.01524 -9.83497 -9.60427 -9.46940 -9.33382 -8.48380 -8.20412 -6.76903 -5.53653 -2.94799 1.04808 1.75828 1.77587 3.24760 3.44109 3.49764 3.50467 3.52336 3.80756 4.06793 4.13779 4.18883 4.54342 4.59670 4.77429 4.85399 4.90853 5.00916 5.03096 5.03446 5.06051 5.17605 5.22200 5.30552 5.39059 5.40624 5.53156 5.53902 5.57416 5.72437 5.80962 5.83873 5.97832 6.13985 6.16316 6.26452 6.27752 6.48591 6.55230 6.71962 6.77897 6.94694 7.00854 7.11964 7.78954 7.81742 7.84050 7.93713 8.06752 8.44563 8.50114 9.38090 10.02116 10.46754 11.45846 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.025399 B = 0.002556 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.134339 B =10953.091584 C =11640.885253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.170 3.830 2 N -0.607 5.607 3 C -0.237 4.237 4 H 0.075 0.925 5 C -0.008 4.008 6 N -0.917 5.917 7 Si 0.903 3.097 8 H -0.280 1.280 9 H -0.293 1.293 10 H -0.291 1.291 11 C 0.148 3.852 12 C 0.116 3.884 13 H 0.070 0.930 14 C -0.107 4.107 15 C -0.140 4.140 16 C 0.099 3.901 17 N -0.595 5.595 18 C 0.610 3.390 19 O -0.537 6.537 20 C -0.089 4.089 21 C 0.090 3.910 22 N -0.353 5.353 23 C 0.170 3.830 24 C -0.161 4.161 25 C -0.148 4.148 26 C -0.163 4.163 27 N -0.070 5.070 28 N -0.205 5.205 29 H 0.037 0.963 30 H -0.006 1.006 31 H 0.044 0.956 32 H 0.247 0.753 33 H 0.056 0.944 34 H 0.040 0.960 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.093 0.907 41 H 0.200 0.800 42 H 0.069 0.931 43 H 0.084 0.916 44 H 0.068 0.932 45 H 0.068 0.932 46 H 0.079 0.921 47 H 0.075 0.925 48 H 0.071 0.929 49 H 0.087 0.913 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.562 -26.436 3.926 28.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.330 5.330 3 C -0.366 4.366 4 H 0.093 0.907 5 C -0.204 4.204 6 N -0.566 5.566 7 Si 0.734 3.266 8 H -0.205 1.205 9 H -0.220 1.220 10 H -0.218 1.218 11 C 0.019 3.981 12 C 0.012 3.988 13 H 0.088 0.912 14 C -0.145 4.145 15 C -0.178 4.178 16 C -0.025 4.025 17 N -0.327 5.327 18 C 0.395 3.605 19 O -0.414 6.414 20 C -0.228 4.228 21 C -0.067 4.067 22 N -0.139 5.139 23 C 0.087 3.913 24 C -0.220 4.220 25 C -0.206 4.206 26 C -0.222 4.222 27 N -0.050 5.050 28 N -0.079 5.079 29 H 0.056 0.944 30 H 0.012 0.988 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.074 0.926 34 H 0.058 0.942 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.111 0.889 41 H 0.217 0.783 42 H 0.088 0.912 43 H 0.103 0.897 44 H 0.087 0.913 45 H 0.087 0.913 46 H 0.098 0.902 47 H 0.094 0.906 48 H 0.090 0.910 49 H 0.106 0.894 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 9.200 -26.452 4.253 28.327 hybrid contribution -0.492 0.921 -0.316 1.091 sum 8.707 -25.531 3.937 27.260 Atomic orbital electron populations 1.21045 0.81518 0.93195 1.01680 1.44022 1.02468 1.00381 1.86148 1.19351 0.90844 0.83596 1.42788 0.90742 1.24853 0.95639 0.97690 1.02201 1.70264 1.05137 1.24352 1.56807 0.86179 0.78861 0.84227 0.77349 1.20517 1.22002 1.21808 1.21062 0.96143 0.88671 0.92206 1.22738 0.95546 0.79070 1.01486 0.91224 1.22572 0.96375 0.96485 0.99099 1.22871 1.00685 0.95745 0.98491 1.22531 0.83790 0.99228 0.96908 1.48462 1.16875 1.07382 1.59987 1.16359 0.84276 0.80901 0.78947 1.90816 1.20524 1.85980 1.44085 1.21553 0.95129 0.95368 1.10743 1.23219 0.96179 0.88609 0.98687 1.50782 1.13958 1.08586 1.40586 1.21068 0.98681 0.73873 0.97642 1.22290 1.03533 1.03458 0.92675 1.21988 0.98194 1.00421 0.99956 1.22303 0.93987 1.02704 1.03160 1.81928 1.09090 0.97138 1.16800 1.74690 1.11279 1.09457 1.12447 0.94409 0.98761 0.93738 0.94159 0.92605 0.94195 0.90189 0.90022 0.90402 0.91334 0.91750 0.88885 0.78313 0.91213 0.89698 0.91272 0.91251 0.90213 0.90634 0.91035 0.89446 0.91134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.54 8.99 59.85 0.54 5.08 16 2 N -0.61 -15.89 2.90 -181.11 -0.52 -16.42 16 3 C -0.24 -6.48 8.63 -15.06 -0.13 -6.61 16 4 H 0.07 1.97 6.90 -52.49 -0.36 1.61 16 5 C -0.01 -0.23 5.44 -17.43 -0.09 -0.32 16 6 N -0.92 -27.22 9.46 55.49 0.52 -26.70 16 7 Si 0.90 22.15 29.56 -169.99 -5.02 17.12 16 8 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 9 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 10 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 11 C 0.15 3.34 5.17 -4.04 -0.02 3.32 16 12 C 0.12 2.29 3.15 -66.95 -0.21 2.08 16 13 H 0.07 1.51 8.14 -51.94 -0.42 1.09 16 14 C -0.11 -1.92 5.46 -24.89 -0.14 -2.05 16 15 C -0.14 -1.96 7.08 -24.58 -0.17 -2.14 16 16 C 0.10 1.45 6.29 -2.53 -0.02 1.43 16 17 N -0.59 -10.36 3.06 -164.24 -0.50 -10.86 16 18 C 0.61 10.71 7.66 -12.48 -0.10 10.62 16 19 O -0.54 -10.84 15.67 5.28 0.08 -10.76 16 20 C -0.09 -1.28 6.84 -83.55 -0.57 -1.85 16 21 C 0.09 1.00 10.43 -16.83 -0.18 0.82 16 22 N -0.35 -3.45 3.44 -48.36 -0.17 -3.61 16 23 C 0.17 1.01 1.25 -131.82 -0.16 0.84 16 24 C -0.16 -0.77 8.74 37.16 0.32 -0.44 16 25 C -0.15 -0.77 8.11 37.16 0.30 -0.47 16 26 C -0.16 -0.69 8.30 37.15 0.31 -0.39 16 27 N -0.07 -0.88 12.91 60.35 0.78 -0.10 16 28 N -0.21 -2.92 9.31 32.85 0.31 -2.62 16 29 H 0.04 1.08 7.18 -51.93 -0.37 0.71 16 30 H -0.01 -0.16 7.78 -51.93 -0.40 -0.56 16 31 H 0.04 1.26 6.90 -51.93 -0.36 0.90 16 32 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 33 H 0.06 1.32 6.32 -51.93 -0.33 0.99 16 34 H 0.04 0.90 7.95 -51.93 -0.41 0.48 16 35 H 0.08 1.52 6.57 -51.93 -0.34 1.17 16 36 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 37 H 0.08 0.94 8.14 -51.92 -0.42 0.52 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.09 1.31 5.86 -51.93 -0.30 1.01 16 41 H 0.20 1.72 7.62 -52.49 -0.40 1.32 16 42 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 44 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 47 H 0.07 0.47 8.06 -51.93 -0.42 0.05 16 48 H 0.07 0.29 7.43 -51.93 -0.39 -0.09 16 49 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 50 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 393.78 15.07 5.93 5.93 Total: -1.00 -33.44 393.78 -7.21 -40.65 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -8.30 Total: -2.55 kcal Atomic # 6 Polarization: 10.23 SS G_CDS: -0.32 Total: 9.92 kcal Atomic # 7 Polarization: -60.73 SS G_CDS: 0.42 Total: -60.31 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.08 Total: -10.76 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.44 -7.21 -40.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570532804.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.605 kcal (2) G-P(sol) polarization free energy of solvation -33.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.19 seconds