Wall clock time and date at job start Tue Mar 31 2020 20:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36935 * 120.00476 * 2 1 4 4 H 1.08000 * 120.00481 * 183.57026 * 3 2 1 5 5 C 1.38818 * 119.99568 * 3.56123 * 3 2 1 6 6 N 1.31616 * 119.99841 * 352.50691 * 5 3 2 7 7 Si 1.86799 * 119.99773 * 172.77830 * 5 3 2 8 8 H 1.48502 * 109.47370 * 0.02562 * 7 5 3 9 9 H 1.48500 * 109.47198 * 120.00452 * 7 5 3 10 10 H 1.48501 * 109.47094 * 240.00365 * 7 5 3 11 11 C 1.46506 * 119.99943 * 179.97438 * 2 1 3 12 12 C 1.53004 * 109.46944 * 267.35243 * 11 2 1 13 13 H 1.08989 * 109.87678 * 54.26357 * 12 11 2 14 14 C 1.54330 * 109.87814 * 293.24458 * 12 11 2 15 15 C 1.55154 * 102.94085 * 218.38902 * 14 12 11 16 16 C 1.54911 * 101.58095 * 35.51082 * 15 14 12 17 17 N 1.47021 * 109.88301 * 175.44380 * 12 11 2 18 18 C 1.34773 * 125.64742 * 298.33595 * 17 12 11 19 19 O 1.21594 * 119.99955 * 4.61508 * 18 17 12 20 20 C 1.47524 * 120.00218 * 184.61721 * 18 17 12 21 21 C 1.36596 * 125.76748 * 179.71315 * 20 18 17 22 22 N 1.34824 * 106.83690 * 179.90010 * 21 20 18 23 23 C 1.46497 * 126.59463 * 180.13187 * 22 21 20 24 24 C 1.53002 * 109.46860 * 75.29592 * 23 22 21 25 25 C 1.53006 * 109.46879 * 195.28990 * 23 22 21 26 26 C 1.52990 * 109.47077 * 315.29167 * 23 22 21 27 27 N 1.40210 * 106.80686 * 0.35458 * 22 21 20 28 28 N 1.28763 * 108.37097 * 359.77480 * 27 22 21 29 29 H 1.09001 * 109.46654 * 62.11338 * 1 2 3 30 30 H 1.09006 * 109.47175 * 182.11177 * 1 2 3 31 31 H 1.08995 * 109.47262 * 302.11330 * 1 2 3 32 32 H 0.97006 * 119.99799 * 179.97438 * 6 5 3 33 33 H 1.09000 * 109.47015 * 27.34660 * 11 2 1 34 34 H 1.09003 * 109.47170 * 147.34954 * 11 2 1 35 35 H 1.09001 * 110.72196 * 336.75740 * 14 12 11 36 36 H 1.09004 * 110.71422 * 100.03076 * 14 12 11 37 37 H 1.09007 * 111.00123 * 153.57759 * 15 14 12 38 38 H 1.08996 * 111.00905 * 277.43096 * 15 14 12 39 39 H 1.08996 * 110.36856 * 81.82385 * 16 15 14 40 40 H 1.09001 * 110.36099 * 204.15162 * 16 15 14 41 41 H 1.07994 * 126.58644 * 0.04064 * 21 20 18 42 42 H 1.08991 * 109.47627 * 60.00218 * 24 23 22 43 43 H 1.09005 * 109.46867 * 179.97438 * 24 23 22 44 44 H 1.09003 * 109.47079 * 299.99318 * 24 23 22 45 45 H 1.09001 * 109.46530 * 60.00213 * 25 23 22 46 46 H 1.09005 * 109.46885 * 180.02562 * 25 23 22 47 47 H 1.09001 * 109.47371 * 300.00262 * 25 23 22 48 48 H 1.09003 * 109.47376 * 60.00367 * 26 23 22 49 49 H 1.09005 * 109.47064 * 179.97438 * 26 23 22 50 50 H 1.09003 * 109.47370 * 299.99708 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.2282 1.1867 -0.0582 5 6 1.4577 2.3869 0.0747 6 7 0.1438 2.3952 -0.0032 7 14 2.3916 3.9918 0.2781 8 1 3.8492 3.7130 0.3324 9 1 2.1011 4.8829 -0.8738 10 1 1.9669 4.6555 1.5368 11 6 2.1975 -1.2688 0.0006 12 6 2.5102 -1.6765 1.4418 13 1 1.5919 -1.6972 2.0285 14 6 3.5087 -0.6781 2.0646 15 6 4.4296 -1.5925 2.9149 16 6 4.4984 -2.8671 2.0371 17 7 3.1487 -3.0007 1.4595 18 6 2.5921 -4.1470 1.0206 19 8 1.5008 -4.1267 0.4846 20 6 3.3067 -5.4263 1.1905 21 6 2.8525 -6.6530 0.7969 22 7 3.8032 -7.5478 1.1334 23 6 3.7606 -8.9944 0.9060 24 6 4.0235 -9.2862 -0.5727 25 6 4.8323 -9.6764 1.7588 26 6 2.3816 -9.5313 1.2945 27 7 4.8381 -6.8283 1.7474 28 7 4.5121 -5.5827 1.7639 29 1 -0.3633 0.4807 -0.9084 30 1 -0.3634 -1.0270 0.0379 31 1 -0.3633 0.5463 0.8704 32 1 -0.3398 3.2345 0.0494 33 1 1.5886 -2.0400 -0.4712 34 1 3.1285 -1.1511 -0.5539 35 1 4.0805 -0.1695 1.2884 36 1 2.9899 0.0420 2.6974 37 1 5.4175 -1.1479 3.0360 38 1 3.9789 -1.8090 3.8834 39 1 5.2389 -2.7439 1.2468 40 1 4.7368 -3.7368 2.6494 41 1 1.9133 -6.8651 0.3079 42 1 5.0059 -8.9037 -0.8495 43 1 3.9923 -10.3626 -0.7418 44 1 3.2600 -8.8003 -1.1803 45 1 4.6449 -9.4685 2.8123 46 1 4.8009 -10.7528 1.5893 47 1 5.8147 -9.2939 1.4821 48 1 1.6181 -9.0454 0.6870 49 1 2.3498 -10.6076 1.1249 50 1 2.1943 -9.3234 2.3480 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570532804.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:42 Heat of formation + Delta-G solvation = 79.218100 kcal Electronic energy + Delta-G solvation = -29931.242073 eV Core-core repulsion = 25996.349339 eV Total energy + Delta-G solvation = -3934.892734 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 2.05 seconds Orbital eigenvalues (eV) -43.32760 -41.01508 -38.68292 -38.25961 -37.14445 -33.59143 -33.10161 -32.67635 -31.60264 -30.42168 -28.45538 -28.41399 -27.98920 -26.76002 -25.40819 -24.70591 -23.23324 -22.78045 -21.70323 -21.37925 -19.89407 -18.85998 -18.17655 -17.67322 -17.29803 -17.01189 -16.72816 -16.14637 -15.74554 -15.50586 -15.38262 -15.14269 -15.04818 -14.86691 -14.51718 -14.25257 -14.03624 -13.66638 -13.61690 -13.45338 -13.37834 -13.23829 -13.15523 -12.81377 -12.77696 -12.76277 -12.66521 -12.49626 -12.44447 -12.28947 -12.00533 -11.97581 -11.86810 -11.69373 -11.49627 -11.41587 -11.25507 -11.05360 -10.61920 -10.37491 -9.71915 -8.87373 -7.69918 -5.14004 0.14425 0.62551 1.03098 1.49899 1.50325 1.60803 1.93261 2.21935 2.55640 3.10672 3.23876 3.39135 3.59149 3.65602 3.68831 3.77653 3.87405 3.88785 3.98023 4.11351 4.18395 4.32728 4.44952 4.51388 4.54676 4.57560 4.60718 4.68036 4.71874 4.80055 4.80869 4.82063 4.88442 4.93974 5.05329 5.07978 5.11470 5.14828 5.19502 5.21883 5.28300 5.43091 5.49124 5.55262 5.55681 5.66471 5.83474 6.31869 6.52476 6.84968 7.11758 7.20076 7.90406 8.33354 9.29939 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.025399 B = 0.002556 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.134339 B =10953.091584 C =11640.885253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.190 3.810 2 N -0.621 5.621 3 C -0.236 4.236 4 H 0.085 0.915 5 C -0.067 4.067 6 N -0.951 5.951 7 Si 0.971 3.029 8 H -0.261 1.261 9 H -0.298 1.298 10 H -0.293 1.293 11 C 0.155 3.845 12 C 0.127 3.873 13 H 0.045 0.955 14 C -0.104 4.104 15 C -0.124 4.124 16 C 0.102 3.898 17 N -0.599 5.599 18 C 0.607 3.393 19 O -0.572 6.572 20 C -0.115 4.115 21 C 0.106 3.894 22 N -0.337 5.337 23 C 0.159 3.841 24 C -0.159 4.159 25 C -0.146 4.146 26 C -0.161 4.161 27 N -0.080 5.080 28 N -0.219 5.219 29 H 0.012 0.988 30 H 0.007 0.993 31 H 0.022 0.978 32 H 0.242 0.758 33 H 0.041 0.959 34 H 0.041 0.959 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.107 0.893 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.103 0.897 41 H 0.224 0.776 42 H 0.055 0.945 43 H 0.114 0.886 44 H 0.067 0.933 45 H 0.058 0.942 46 H 0.110 0.890 47 H 0.062 0.938 48 H 0.074 0.926 49 H 0.115 0.885 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.541 -28.710 4.403 30.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.345 5.345 3 C -0.366 4.366 4 H 0.103 0.897 5 C -0.259 4.259 6 N -0.601 5.601 7 Si 0.800 3.200 8 H -0.185 1.185 9 H -0.226 1.226 10 H -0.220 1.220 11 C 0.027 3.973 12 C 0.021 3.979 13 H 0.063 0.937 14 C -0.142 4.142 15 C -0.162 4.162 16 C -0.020 4.020 17 N -0.330 5.330 18 C 0.394 3.606 19 O -0.452 6.452 20 C -0.255 4.255 21 C -0.052 4.052 22 N -0.123 5.123 23 C 0.078 3.922 24 C -0.217 4.217 25 C -0.204 4.204 26 C -0.219 4.219 27 N -0.060 5.060 28 N -0.092 5.092 29 H 0.030 0.970 30 H 0.025 0.975 31 H 0.041 0.959 32 H 0.052 0.948 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.125 0.875 38 H 0.096 0.904 39 H 0.088 0.912 40 H 0.121 0.879 41 H 0.240 0.760 42 H 0.074 0.926 43 H 0.133 0.867 44 H 0.086 0.914 45 H 0.077 0.923 46 H 0.129 0.871 47 H 0.081 0.919 48 H 0.093 0.907 49 H 0.134 0.866 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 11.249 -28.790 4.749 31.272 hybrid contribution -1.106 1.411 -0.521 1.866 sum 10.143 -27.379 4.229 29.502 Atomic orbital electron populations 1.20683 0.82290 0.93145 0.99357 1.44205 1.02316 1.01485 1.86453 1.19672 0.91356 0.83987 1.41570 0.89708 1.25668 0.96522 1.01017 1.02687 1.70458 1.06655 1.24707 1.58285 0.85117 0.78573 0.79792 0.76546 1.18524 1.22577 1.22026 1.21040 0.95326 0.86826 0.94077 1.22271 0.95644 0.81170 0.98811 0.93706 1.22441 0.96365 0.96233 0.99163 1.22856 1.01248 0.94183 0.97892 1.22659 0.82244 0.99955 0.97189 1.48487 1.17815 1.06475 1.60255 1.16788 0.83995 0.81807 0.77962 1.90784 1.22091 1.86674 1.45618 1.21227 0.95964 0.94903 1.13363 1.23520 0.96750 0.87738 0.97235 1.51157 1.12581 1.09869 1.38720 1.21600 1.00227 0.71527 0.98826 1.22317 1.02644 1.05363 0.91349 1.22019 0.97111 1.02193 0.99044 1.22349 0.92598 1.04448 1.02550 1.81848 1.10036 0.96808 1.17268 1.74632 1.11263 1.10380 1.12967 0.96951 0.97464 0.95899 0.94761 0.94048 0.94051 0.91089 0.91452 0.87491 0.90427 0.91169 0.87896 0.75990 0.92569 0.86748 0.91376 0.92311 0.87148 0.91919 0.90727 0.86616 0.92071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 10.56 8.99 127.77 1.15 11.71 16 2 N -0.62 -33.29 2.90 -726.91 -2.11 -35.40 16 3 C -0.24 -13.06 8.63 84.04 0.73 -12.34 16 4 H 0.09 4.43 6.90 -2.91 -0.02 4.41 16 5 C -0.07 -3.81 5.44 84.86 0.46 -3.35 16 6 N -0.95 -57.99 9.46 21.65 0.20 -57.79 16 7 Si 0.97 45.82 29.56 68.60 2.03 47.85 16 8 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 9 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 10 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 11 C 0.15 7.14 5.17 86.38 0.45 7.58 16 12 C 0.13 5.07 3.15 45.34 0.14 5.21 16 13 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 14 C -0.10 -3.66 5.46 31.78 0.17 -3.48 16 15 C -0.12 -3.22 7.08 31.99 0.23 -2.99 16 16 C 0.10 2.83 6.29 86.86 0.55 3.38 16 17 N -0.60 -20.82 3.06 -791.79 -2.43 -23.24 16 18 C 0.61 21.48 7.66 86.69 0.66 22.15 16 19 O -0.57 -23.61 15.67 -4.01 -0.06 -23.67 16 20 C -0.12 -3.27 6.84 40.82 0.28 -2.99 16 21 C 0.11 2.22 10.43 83.85 0.87 3.09 16 22 N -0.34 -6.03 3.44 -306.91 -1.06 -7.09 16 23 C 0.16 1.48 1.25 3.60 0.00 1.49 16 24 C -0.16 -1.06 8.74 71.98 0.63 -0.43 16 25 C -0.15 -1.17 8.11 71.98 0.58 -0.58 16 26 C -0.16 -0.88 8.30 71.98 0.60 -0.28 16 27 N -0.08 -1.92 12.91 37.02 0.48 -1.44 16 28 N -0.22 -6.04 9.31 -50.00 -0.47 -6.51 16 29 H 0.01 0.72 7.18 -2.39 -0.02 0.71 16 30 H 0.01 0.35 7.78 -2.38 -0.02 0.34 16 31 H 0.02 1.35 6.90 -2.39 -0.02 1.33 16 32 H 0.24 14.40 8.31 -92.70 -0.77 13.62 16 33 H 0.04 2.01 6.32 -2.39 -0.02 2.00 16 34 H 0.04 1.87 7.95 -2.39 -0.02 1.86 16 35 H 0.07 2.62 6.57 -2.39 -0.02 2.61 16 36 H 0.07 2.56 8.14 -2.38 -0.02 2.54 16 37 H 0.11 2.22 8.14 -2.38 -0.02 2.20 16 38 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.10 2.74 5.86 -2.39 -0.01 2.73 16 41 H 0.22 3.45 7.62 -2.91 -0.02 3.43 16 42 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 43 H 0.11 0.12 8.14 -2.38 -0.02 0.10 16 44 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 45 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 46 H 0.11 0.21 8.14 -2.38 -0.02 0.19 16 47 H 0.06 0.68 8.06 -2.39 -0.02 0.66 16 48 H 0.07 0.39 7.43 -2.39 -0.02 0.37 16 49 H 0.12 0.02 8.14 -2.38 -0.02 0.00 16 50 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 Total: -1.00 -74.65 393.78 5.02 -69.63 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: 0.92 Total: 9.51 kcal Atomic # 6 Polarization: 20.65 SS G_CDS: 7.50 Total: 28.16 kcal Atomic # 7 Polarization: -126.09 SS G_CDS: -5.37 Total: -131.47 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: -0.06 Total: -23.67 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -74.65 5.02 -69.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570532804.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.844 kcal (2) G-P(sol) polarization free energy of solvation -74.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.05 seconds