Wall clock time and date at job start Tue Mar 31 2020 20:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50697 * 119.99714 * 2 1 4 4 C 1.52997 * 109.47482 * 124.99674 * 3 2 1 5 5 N 1.46495 * 109.47726 * 179.97438 * 4 3 2 6 6 C 1.34811 * 126.59602 * 124.97453 * 5 4 3 7 7 C 1.36601 * 106.83811 * 180.02562 * 6 5 4 8 8 C 1.47525 * 125.76840 * 179.97438 * 7 6 5 9 9 O 1.21594 * 120.00231 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99823 * 179.97438 * 8 7 6 11 11 C 1.46494 * 119.99907 * 179.97438 * 10 8 7 12 12 H 1.09003 * 109.47108 * 35.00584 * 11 10 8 13 13 C 1.53001 * 109.47213 * 155.00319 * 11 10 8 14 14 N 1.46504 * 109.47431 * 305.00490 * 13 11 10 15 15 C 1.36933 * 120.00363 * 179.97438 * 14 13 11 16 16 H 1.07996 * 119.99716 * 359.97438 * 15 14 13 17 17 C 1.38811 * 119.99802 * 180.02562 * 15 14 13 18 18 N 1.31616 * 120.00485 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99561 * 180.02562 * 17 15 14 20 20 H 1.48490 * 109.47475 * 359.97438 * 19 17 15 21 21 H 1.48506 * 109.47019 * 120.00079 * 19 17 15 22 22 H 1.48500 * 109.47030 * 239.99431 * 19 17 15 23 23 C 1.52994 * 109.47480 * 275.00673 * 11 10 8 24 24 C 1.52998 * 109.47361 * 59.99962 * 23 11 10 25 25 C 1.53002 * 109.47477 * 180.02562 * 23 11 10 26 26 C 1.53004 * 109.47102 * 299.99776 * 23 11 10 27 27 N 1.34399 * 108.45907 * 0.02562 * 7 6 5 28 28 N 1.28756 * 109.52433 * 359.97438 * 27 7 6 29 29 H 1.07996 * 119.99862 * 0.02562 * 1 2 3 30 30 H 1.07999 * 119.99847 * 179.97438 * 1 2 3 31 31 H 1.07996 * 119.99862 * 179.97438 * 2 1 3 32 32 H 1.09002 * 109.47396 * 4.99504 * 3 2 1 33 33 H 1.08999 * 109.46909 * 244.99456 * 3 2 1 34 34 H 1.09002 * 109.46944 * 59.99553 * 4 3 2 35 35 H 1.08998 * 109.47319 * 300.00093 * 4 3 2 36 36 H 1.07993 * 126.58106 * 0.02562 * 6 5 4 37 37 H 0.96998 * 120.00042 * 0.02562 * 10 8 7 38 38 H 1.09002 * 109.46861 * 65.00283 * 13 11 10 39 39 H 1.08995 * 109.47532 * 185.00220 * 13 11 10 40 40 H 0.97009 * 119.99410 * 359.97438 * 14 13 11 41 41 H 0.96997 * 120.00758 * 179.97438 * 18 17 15 42 42 H 1.09003 * 109.47051 * 60.00197 * 24 23 11 43 43 H 1.09002 * 109.47351 * 179.97438 * 24 23 11 44 44 H 1.08994 * 109.46825 * 300.00065 * 24 23 11 45 45 H 1.09003 * 109.47295 * 59.99836 * 25 23 11 46 46 H 1.09001 * 109.47657 * 179.97438 * 25 23 11 47 47 H 1.08996 * 109.47253 * 300.00217 * 25 23 11 48 48 H 1.09004 * 109.46666 * 60.00242 * 26 23 11 49 49 H 1.09002 * 109.46972 * 180.02562 * 26 23 11 50 50 H 1.09000 * 109.47377 * 300.00286 * 26 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3333 1.1816 5 7 3.7678 2.6017 1.1813 6 6 3.8489 3.4833 2.1980 7 6 4.6285 4.5175 1.7637 8 6 4.9887 5.7142 2.5477 9 8 4.5820 5.8399 3.6867 10 7 5.7694 6.6676 2.0017 11 6 6.1266 7.8562 2.7800 12 1 6.2502 7.5810 3.8275 13 6 7.4372 8.4394 2.2479 14 7 8.4722 7.4026 2.2566 15 6 9.7370 7.6941 1.8202 16 1 9.9714 8.6881 1.4692 17 6 10.7175 6.7115 1.8280 18 7 10.4317 5.4998 2.2552 19 14 12.4431 7.1094 1.2333 20 1 12.5049 8.5310 0.8088 21 1 13.4118 6.8786 2.3350 22 1 12.7842 6.2344 0.0829 23 6 5.0157 8.9006 2.6549 24 6 3.7051 8.3175 3.1871 25 6 5.3890 10.1423 3.4673 26 6 4.8421 9.2870 1.1847 27 7 5.0110 4.2610 0.5011 28 7 4.5191 3.1328 0.1232 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3585 2.1317 0.0895 33 1 2.6213 1.4026 -0.9313 34 1 3.7399 0.5067 1.0921 35 1 2.4772 1.2358 2.1130 36 1 3.3863 3.3899 3.1693 37 1 6.0941 6.5671 1.0933 38 1 7.2887 8.7960 1.2286 39 1 7.7492 9.2696 2.8815 40 1 8.2615 6.5096 2.5715 41 1 11.1167 4.8131 2.2603 42 1 3.8287 8.0423 4.2346 43 1 2.9137 9.0618 3.0984 44 1 3.4393 7.4332 2.6080 45 1 6.3226 10.5576 3.0877 46 1 4.5977 10.8866 3.3778 47 1 5.5130 9.8674 4.5147 48 1 4.5762 8.4026 0.6056 49 1 4.0509 10.0315 1.0956 50 1 5.7758 9.7024 0.8055 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571634160.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:40 Heat of formation + Delta-G solvation = 82.361354 kcal Electronic energy + Delta-G solvation = -29436.720503 eV Core-core repulsion = 25501.964071 eV Total energy + Delta-G solvation = -3934.756432 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.15712 -39.78203 -37.27817 -36.67669 -34.35925 -34.01538 -33.03640 -31.12617 -30.83826 -29.55579 -27.66660 -27.04482 -26.63835 -24.85699 -24.04411 -23.05939 -21.86275 -21.35967 -20.39379 -20.14790 -18.51749 -17.96801 -16.99619 -16.29861 -16.20476 -15.87959 -15.64527 -15.35705 -14.73042 -14.63170 -14.40291 -13.94343 -13.82697 -13.64073 -13.43269 -13.24991 -13.05093 -13.02843 -12.61996 -12.18338 -12.10545 -11.90636 -11.87096 -11.72310 -11.63087 -11.30183 -11.16352 -11.13847 -11.02179 -10.77620 -10.65651 -10.46169 -10.43163 -10.14329 -9.87896 -9.85450 -9.72641 -9.67536 -9.21362 -8.82867 -8.47920 -6.86520 -5.70355 -2.99566 1.14766 1.67858 1.89766 2.01990 3.46740 3.49676 3.52622 3.55006 3.61931 4.08839 4.22898 4.32482 4.48849 4.62536 4.71233 4.80175 4.81352 4.99915 5.01933 5.10788 5.13853 5.25245 5.32222 5.45017 5.51209 5.61486 5.65061 5.75746 5.85592 5.89977 5.96830 6.00206 6.09410 6.11841 6.16422 6.19912 6.20243 6.23788 6.31153 6.38759 6.52983 6.54466 6.58835 6.70707 6.81654 7.04170 7.75251 7.84477 8.11539 8.47114 8.57698 9.59009 10.16130 10.51138 11.51995 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.009771 B = 0.003114 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2865.009440 B = 8989.996158 C =11226.545967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.157 4.157 3 C -0.107 4.107 4 C 0.127 3.873 5 N -0.366 5.366 6 C 0.088 3.912 7 C -0.093 4.093 8 C 0.604 3.396 9 O -0.545 6.545 10 N -0.690 5.690 11 C 0.149 3.851 12 H 0.088 0.912 13 C 0.142 3.858 14 N -0.731 5.731 15 C -0.239 4.239 16 H 0.071 0.929 17 C -0.013 4.013 18 N -0.929 5.929 19 Si 0.906 3.094 20 H -0.281 1.281 21 H -0.293 1.293 22 H -0.292 1.292 23 C -0.076 4.076 24 C -0.129 4.129 25 C -0.140 4.140 26 C -0.143 4.143 27 N -0.195 5.195 28 N -0.066 5.066 29 H 0.097 0.903 30 H 0.101 0.899 31 H 0.115 0.885 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.100 0.900 35 H 0.105 0.895 36 H 0.202 0.798 37 H 0.412 0.588 38 H 0.029 0.971 39 H 0.036 0.964 40 H 0.386 0.614 41 H 0.253 0.747 42 H 0.062 0.938 43 H 0.041 0.959 44 H 0.051 0.949 45 H 0.062 0.938 46 H 0.052 0.948 47 H 0.055 0.945 48 H 0.053 0.947 49 H 0.048 0.952 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.247 -6.068 -1.306 23.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.175 4.175 3 C -0.145 4.145 4 C 0.006 3.994 5 N -0.151 5.151 6 C -0.069 4.069 7 C -0.233 4.233 8 C 0.388 3.612 9 O -0.422 6.422 10 N -0.339 5.339 11 C 0.044 3.956 12 H 0.106 0.894 13 C 0.014 3.986 14 N -0.375 5.375 15 C -0.370 4.370 16 H 0.089 0.911 17 C -0.209 4.209 18 N -0.578 5.578 19 Si 0.737 3.263 20 H -0.206 1.206 21 H -0.220 1.220 22 H -0.219 1.219 23 C -0.078 4.078 24 C -0.187 4.187 25 C -0.198 4.198 26 C -0.200 4.200 27 N -0.069 5.069 28 N -0.046 5.046 29 H 0.116 0.884 30 H 0.119 0.881 31 H 0.133 0.867 32 H 0.094 0.906 33 H 0.110 0.890 34 H 0.118 0.882 35 H 0.123 0.877 36 H 0.219 0.781 37 H 0.248 0.752 38 H 0.047 0.953 39 H 0.054 0.946 40 H 0.220 0.780 41 H 0.063 0.937 42 H 0.081 0.919 43 H 0.060 0.940 44 H 0.070 0.930 45 H 0.081 0.919 46 H 0.071 0.929 47 H 0.075 0.925 48 H 0.072 0.928 49 H 0.067 0.933 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -21.902 -6.117 -1.995 22.827 hybrid contribution 0.733 -0.378 0.343 0.893 sum -21.169 -6.495 -1.652 22.204 Atomic orbital electron populations 1.23948 0.95882 1.02235 0.99859 1.22762 0.96007 0.97744 1.01018 1.21028 0.98001 0.96626 0.98802 1.21976 0.94415 0.81699 1.01300 1.50518 1.36042 1.17372 1.11143 1.23327 0.98864 0.89431 0.95233 1.21593 1.07663 1.00428 0.93571 1.16653 0.78627 0.80737 0.85147 1.90775 1.55471 1.78538 1.17430 1.45725 1.49584 1.19905 1.18671 1.21330 0.93712 0.83712 0.96825 0.89359 1.21100 0.86637 0.92744 0.98142 1.42364 1.07086 1.10077 1.78022 1.19237 0.86822 0.96047 1.34882 0.91132 1.24740 0.98217 0.95783 1.02153 1.69681 1.33068 1.02157 1.52878 0.86138 0.84935 0.77313 0.77914 1.20582 1.21979 1.21942 1.20899 0.95628 0.95283 0.95959 1.21884 0.95392 0.99602 1.01784 1.21883 1.01486 0.96504 0.99920 1.21926 1.01693 1.00993 0.95382 1.74701 1.14283 1.07401 1.10497 1.81979 1.09121 1.05140 1.08402 0.88420 0.88062 0.86692 0.90604 0.88962 0.88209 0.87693 0.78096 0.75237 0.95314 0.94645 0.78020 0.93657 0.91936 0.94039 0.92988 0.91872 0.92938 0.92548 0.92755 0.93260 0.91850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.89 14.32 29.01 0.42 -0.47 16 2 C -0.16 -0.80 9.52 -36.03 -0.34 -1.14 16 3 C -0.11 -0.67 5.86 -27.89 -0.16 -0.84 16 4 C 0.13 0.83 6.52 -4.05 -0.03 0.80 16 5 N -0.37 -4.06 3.69 -61.07 -0.23 -4.28 16 6 C 0.09 1.05 11.27 -16.83 -0.19 0.86 16 7 C -0.09 -1.47 6.99 -83.55 -0.58 -2.05 16 8 C 0.60 10.43 6.17 -12.47 -0.08 10.35 16 9 O -0.54 -9.95 13.99 5.28 0.07 -9.88 16 10 N -0.69 -12.04 3.64 -54.85 -0.20 -12.24 16 11 C 0.15 2.58 1.69 -67.94 -0.11 2.46 16 12 H 0.09 1.70 7.58 -51.93 -0.39 1.31 16 13 C 0.14 2.81 5.10 -4.04 -0.02 2.79 16 14 N -0.73 -18.58 5.43 -59.91 -0.33 -18.90 16 15 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 16 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 17 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 18 N -0.93 -28.72 13.06 55.49 0.72 -28.00 16 19 Si 0.91 22.81 29.55 -169.99 -5.02 17.78 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 22 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 23 C -0.08 -1.08 0.62 -154.51 -0.10 -1.18 16 24 C -0.13 -1.82 7.00 37.16 0.26 -1.56 16 25 C -0.14 -1.81 8.12 37.16 0.30 -1.51 16 26 C -0.14 -1.90 7.97 37.16 0.30 -1.60 16 27 N -0.20 -3.30 12.04 32.85 0.40 -2.91 16 28 N -0.07 -0.99 13.65 60.35 0.82 -0.17 16 29 H 0.10 0.46 7.84 -52.49 -0.41 0.05 16 30 H 0.10 0.39 8.06 -52.49 -0.42 -0.03 16 31 H 0.12 0.47 8.06 -52.49 -0.42 0.05 16 32 H 0.08 0.51 7.79 -51.93 -0.40 0.10 16 33 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.10 0.41 8.08 -51.93 -0.42 -0.01 16 36 H 0.20 1.73 8.06 -52.49 -0.42 1.31 16 37 H 0.41 7.50 8.29 -40.82 -0.34 7.16 16 38 H 0.03 0.57 6.17 -51.93 -0.32 0.25 16 39 H 0.04 0.71 6.71 -51.93 -0.35 0.36 16 40 H 0.39 10.58 7.33 -40.82 -0.30 10.28 16 41 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 42 H 0.06 0.95 7.53 -51.93 -0.39 0.56 16 43 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.05 0.78 5.78 -51.93 -0.30 0.48 16 45 H 0.06 0.83 6.54 -51.93 -0.34 0.49 16 46 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.05 0.75 7.60 -51.93 -0.39 0.35 16 49 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 50 H 0.06 0.86 6.32 -51.93 -0.33 0.54 16 LS Contribution 405.74 15.07 6.11 6.11 Total: -1.00 -33.90 405.74 -6.27 -40.17 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: -8.04 Total: 12.71 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: -0.59 Total: -0.40 kcal Atomic # 7 Polarization: -67.69 SS G_CDS: 1.19 Total: -66.50 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.07 Total: -9.88 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.02 Total: 17.78 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.90 -6.27 -40.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571634160.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.533 kcal (2) G-P(sol) polarization free energy of solvation -33.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds