Wall clock time and date at job start Tue Mar 31 2020 20:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50697 * 119.99714 * 2 1 4 4 C 1.52997 * 109.47482 * 124.99674 * 3 2 1 5 5 N 1.46495 * 109.47726 * 179.97438 * 4 3 2 6 6 C 1.34811 * 126.59602 * 124.97453 * 5 4 3 7 7 C 1.36601 * 106.83811 * 180.02562 * 6 5 4 8 8 C 1.47525 * 125.76840 * 179.97438 * 7 6 5 9 9 O 1.21594 * 120.00231 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99823 * 179.97438 * 8 7 6 11 11 C 1.46494 * 119.99907 * 179.97438 * 10 8 7 12 12 H 1.09003 * 109.47108 * 35.00584 * 11 10 8 13 13 C 1.53001 * 109.47213 * 155.00319 * 11 10 8 14 14 N 1.46504 * 109.47431 * 305.00490 * 13 11 10 15 15 C 1.36933 * 120.00363 * 179.97438 * 14 13 11 16 16 H 1.07996 * 119.99716 * 359.97438 * 15 14 13 17 17 C 1.38811 * 119.99802 * 180.02562 * 15 14 13 18 18 N 1.31616 * 120.00485 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99561 * 180.02562 * 17 15 14 20 20 H 1.48490 * 109.47475 * 359.97438 * 19 17 15 21 21 H 1.48506 * 109.47019 * 120.00079 * 19 17 15 22 22 H 1.48500 * 109.47030 * 239.99431 * 19 17 15 23 23 C 1.52994 * 109.47480 * 275.00673 * 11 10 8 24 24 C 1.52998 * 109.47361 * 59.99962 * 23 11 10 25 25 C 1.53002 * 109.47477 * 180.02562 * 23 11 10 26 26 C 1.53004 * 109.47102 * 299.99776 * 23 11 10 27 27 N 1.34399 * 108.45907 * 0.02562 * 7 6 5 28 28 N 1.28756 * 109.52433 * 359.97438 * 27 7 6 29 29 H 1.07996 * 119.99862 * 0.02562 * 1 2 3 30 30 H 1.07999 * 119.99847 * 179.97438 * 1 2 3 31 31 H 1.07996 * 119.99862 * 179.97438 * 2 1 3 32 32 H 1.09002 * 109.47396 * 4.99504 * 3 2 1 33 33 H 1.08999 * 109.46909 * 244.99456 * 3 2 1 34 34 H 1.09002 * 109.46944 * 59.99553 * 4 3 2 35 35 H 1.08998 * 109.47319 * 300.00093 * 4 3 2 36 36 H 1.07993 * 126.58106 * 0.02562 * 6 5 4 37 37 H 0.96998 * 120.00042 * 0.02562 * 10 8 7 38 38 H 1.09002 * 109.46861 * 65.00283 * 13 11 10 39 39 H 1.08995 * 109.47532 * 185.00220 * 13 11 10 40 40 H 0.97009 * 119.99410 * 359.97438 * 14 13 11 41 41 H 0.96997 * 120.00758 * 179.97438 * 18 17 15 42 42 H 1.09003 * 109.47051 * 60.00197 * 24 23 11 43 43 H 1.09002 * 109.47351 * 179.97438 * 24 23 11 44 44 H 1.08994 * 109.46825 * 300.00065 * 24 23 11 45 45 H 1.09003 * 109.47295 * 59.99836 * 25 23 11 46 46 H 1.09001 * 109.47657 * 179.97438 * 25 23 11 47 47 H 1.08996 * 109.47253 * 300.00217 * 25 23 11 48 48 H 1.09004 * 109.46666 * 60.00242 * 26 23 11 49 49 H 1.09002 * 109.46972 * 180.02562 * 26 23 11 50 50 H 1.09000 * 109.47377 * 300.00286 * 26 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3333 1.1816 5 7 3.7678 2.6017 1.1813 6 6 3.8489 3.4833 2.1980 7 6 4.6285 4.5175 1.7637 8 6 4.9887 5.7142 2.5477 9 8 4.5820 5.8399 3.6867 10 7 5.7694 6.6676 2.0017 11 6 6.1266 7.8562 2.7800 12 1 6.2502 7.5810 3.8275 13 6 7.4372 8.4394 2.2479 14 7 8.4722 7.4026 2.2566 15 6 9.7370 7.6941 1.8202 16 1 9.9714 8.6881 1.4692 17 6 10.7175 6.7115 1.8280 18 7 10.4317 5.4998 2.2552 19 14 12.4431 7.1094 1.2333 20 1 12.5049 8.5310 0.8088 21 1 13.4118 6.8786 2.3350 22 1 12.7842 6.2344 0.0829 23 6 5.0157 8.9006 2.6549 24 6 3.7051 8.3175 3.1871 25 6 5.3890 10.1423 3.4673 26 6 4.8421 9.2870 1.1847 27 7 5.0110 4.2610 0.5011 28 7 4.5191 3.1328 0.1232 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3585 2.1317 0.0895 33 1 2.6213 1.4026 -0.9313 34 1 3.7399 0.5067 1.0921 35 1 2.4772 1.2358 2.1130 36 1 3.3863 3.3899 3.1693 37 1 6.0941 6.5671 1.0933 38 1 7.2887 8.7960 1.2286 39 1 7.7492 9.2696 2.8815 40 1 8.2615 6.5096 2.5715 41 1 11.1167 4.8131 2.2603 42 1 3.8287 8.0423 4.2346 43 1 2.9137 9.0618 3.0984 44 1 3.4393 7.4332 2.6080 45 1 6.3226 10.5576 3.0877 46 1 4.5977 10.8866 3.3778 47 1 5.5130 9.8674 4.5147 48 1 4.5762 8.4026 0.6056 49 1 4.0509 10.0315 1.0956 50 1 5.7758 9.7024 0.8055 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571634160.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:39 Heat of formation + Delta-G solvation = 59.432064 kcal Electronic energy + Delta-G solvation = -29437.714792 eV Core-core repulsion = 25501.964071 eV Total energy + Delta-G solvation = -3935.750721 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.21736 -41.11052 -38.58744 -37.31000 -36.17309 -34.88587 -34.37772 -32.96808 -31.99243 -30.33791 -29.25132 -28.12904 -27.80572 -25.87520 -25.52981 -24.48548 -22.95267 -22.77520 -21.38783 -20.75491 -19.83374 -19.36168 -18.65895 -17.27922 -17.23290 -17.20359 -16.76328 -16.34117 -16.22256 -15.71084 -15.49931 -15.32854 -15.12395 -14.96704 -14.80500 -14.46746 -14.17301 -13.95081 -13.70248 -13.61113 -13.12843 -13.02640 -13.00408 -12.90942 -12.75130 -12.65562 -12.48798 -12.33651 -12.14141 -12.12919 -12.02500 -11.99801 -11.73838 -11.60693 -11.31505 -11.26346 -11.10077 -10.89624 -10.36798 -10.26288 -9.83195 -8.96941 -7.92155 -5.21226 0.16743 0.67400 1.06223 1.41760 1.47423 1.48445 1.58415 2.20245 2.34661 2.57080 3.23370 3.38541 3.42568 3.68113 3.76857 3.81192 3.90066 3.97958 4.04823 4.08763 4.22967 4.27711 4.36055 4.37199 4.40706 4.47560 4.64005 4.68919 4.83399 4.86471 4.88764 4.92681 4.98150 5.00234 5.07235 5.10314 5.12291 5.18479 5.28061 5.34647 5.46511 5.47153 5.52339 5.59341 5.66751 5.72394 5.82824 6.28283 6.51315 6.94054 7.22535 7.35164 8.10024 8.33257 9.31262 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.009771 B = 0.003114 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2865.009440 B = 8989.996158 C =11226.545967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.160 4.160 3 C -0.101 4.101 4 C 0.117 3.883 5 N -0.349 5.349 6 C 0.109 3.891 7 C -0.125 4.125 8 C 0.604 3.396 9 O -0.560 6.560 10 N -0.693 5.693 11 C 0.157 3.843 12 H 0.065 0.935 13 C 0.143 3.857 14 N -0.743 5.743 15 C -0.238 4.238 16 H 0.080 0.920 17 C -0.077 4.077 18 N -0.969 5.969 19 Si 0.973 3.027 20 H -0.263 1.263 21 H -0.295 1.295 22 H -0.296 1.296 23 C -0.070 4.070 24 C -0.121 4.121 25 C -0.138 4.138 26 C -0.138 4.138 27 N -0.229 5.229 28 N -0.090 5.090 29 H 0.096 0.904 30 H 0.113 0.887 31 H 0.127 0.873 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.113 0.887 35 H 0.141 0.859 36 H 0.239 0.761 37 H 0.406 0.594 38 H 0.039 0.961 39 H 0.043 0.957 40 H 0.372 0.628 41 H 0.248 0.752 42 H 0.048 0.952 43 H 0.063 0.937 44 H 0.038 0.962 45 H 0.059 0.941 46 H 0.076 0.924 47 H 0.052 0.948 48 H 0.044 0.956 49 H 0.071 0.929 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.814 -5.759 -1.188 24.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.179 4.179 3 C -0.139 4.139 4 C -0.002 4.002 5 N -0.133 5.133 6 C -0.049 4.049 7 C -0.265 4.265 8 C 0.389 3.611 9 O -0.439 6.439 10 N -0.341 5.341 11 C 0.053 3.947 12 H 0.083 0.917 13 C 0.017 3.983 14 N -0.386 5.386 15 C -0.370 4.370 16 H 0.098 0.902 17 C -0.270 4.270 18 N -0.620 5.620 19 Si 0.802 3.198 20 H -0.187 1.187 21 H -0.223 1.223 22 H -0.224 1.224 23 C -0.072 4.072 24 C -0.178 4.178 25 C -0.196 4.196 26 C -0.195 4.195 27 N -0.102 5.102 28 N -0.070 5.070 29 H 0.115 0.885 30 H 0.131 0.869 31 H 0.145 0.855 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.131 0.869 35 H 0.159 0.841 36 H 0.255 0.745 37 H 0.241 0.759 38 H 0.057 0.943 39 H 0.061 0.939 40 H 0.204 0.796 41 H 0.057 0.943 42 H 0.067 0.933 43 H 0.082 0.918 44 H 0.057 0.943 45 H 0.078 0.922 46 H 0.094 0.906 47 H 0.071 0.929 48 H 0.063 0.937 49 H 0.090 0.910 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -23.501 -5.779 -1.904 24.276 hybrid contribution 1.083 -0.521 0.323 1.245 sum -22.418 -6.301 -1.581 23.340 Atomic orbital electron populations 1.24100 0.95911 1.02811 0.99076 1.22750 0.96062 0.97393 1.01645 1.20938 0.97689 0.97367 0.97876 1.22496 0.94692 0.79847 1.03155 1.50822 1.34619 1.18044 1.09847 1.23822 0.96968 0.87948 0.96184 1.21608 1.09877 1.01243 0.93788 1.16859 0.78161 0.81002 0.85090 1.90749 1.56163 1.79000 1.17979 1.45730 1.49786 1.20286 1.18307 1.21207 0.93783 0.84606 0.95144 0.91718 1.21244 0.86566 0.91679 0.98808 1.42554 1.07619 1.10620 1.77771 1.19666 0.87836 0.96196 1.33296 0.90224 1.25569 1.02209 0.95803 1.03370 1.69852 1.33990 1.03162 1.55006 0.85077 0.80075 0.77765 0.76865 1.18726 1.22284 1.22383 1.20863 0.94430 0.94783 0.97083 1.21778 0.95788 0.99681 1.00534 1.21875 1.02183 0.96200 0.99315 1.21883 1.02242 1.01177 0.94237 1.74666 1.15542 1.08539 1.11431 1.81873 1.10201 1.04996 1.09923 0.88526 0.86908 0.85535 0.91075 0.90785 0.86934 0.84141 0.74514 0.75856 0.94315 0.93925 0.79595 0.94310 0.93302 0.91762 0.94289 0.92211 0.90557 0.92930 0.93650 0.90994 0.92301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.42 14.32 67.78 0.97 -0.45 16 2 C -0.16 -1.32 9.52 25.64 0.24 -1.08 16 3 C -0.10 -1.14 5.86 29.85 0.17 -0.97 16 4 C 0.12 1.27 6.52 86.38 0.56 1.83 16 5 N -0.35 -7.34 3.69 -347.12 -1.28 -8.62 16 6 C 0.11 2.47 11.27 83.85 0.95 3.42 16 7 C -0.13 -3.99 6.99 40.82 0.29 -3.71 16 8 C 0.60 21.34 6.17 86.69 0.53 21.88 16 9 O -0.56 -20.72 13.99 -4.01 -0.06 -20.77 16 10 N -0.69 -24.97 3.64 -445.72 -1.62 -26.59 16 11 C 0.16 5.52 1.69 44.99 0.08 5.60 16 12 H 0.06 2.58 7.58 -2.39 -0.02 2.56 16 13 C 0.14 5.72 5.10 86.38 0.44 6.16 16 14 N -0.74 -38.48 5.43 -343.45 -1.87 -40.35 16 15 C -0.24 -13.46 9.99 84.03 0.84 -12.62 16 16 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 17 C -0.08 -4.56 5.50 84.86 0.47 -4.09 16 18 N -0.97 -61.39 13.06 21.65 0.28 -61.10 16 19 Si 0.97 47.34 29.55 68.60 2.03 49.37 16 20 H -0.26 -11.89 7.11 99.48 0.71 -11.19 16 21 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 22 H -0.30 -14.51 7.11 99.48 0.71 -13.81 16 23 C -0.07 -1.92 0.62 -52.18 -0.03 -1.95 16 24 C -0.12 -3.26 7.00 71.98 0.50 -2.76 16 25 C -0.14 -3.32 8.12 71.98 0.58 -2.73 16 26 C -0.14 -3.47 7.97 71.98 0.57 -2.90 16 27 N -0.23 -8.00 12.04 -49.99 -0.60 -8.60 16 28 N -0.09 -2.72 13.65 37.02 0.51 -2.21 16 29 H 0.10 0.77 7.84 -2.91 -0.02 0.74 16 30 H 0.11 0.63 8.06 -2.91 -0.02 0.60 16 31 H 0.13 0.76 8.06 -2.91 -0.02 0.73 16 32 H 0.07 0.87 7.79 -2.39 -0.02 0.85 16 33 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.14 0.59 8.08 -2.39 -0.02 0.57 16 36 H 0.24 3.44 8.06 -2.91 -0.02 3.41 16 37 H 0.41 15.48 8.29 -92.71 -0.77 14.71 16 38 H 0.04 1.50 6.17 -2.39 -0.01 1.49 16 39 H 0.04 1.67 6.71 -2.39 -0.02 1.65 16 40 H 0.37 21.14 7.33 -92.70 -0.68 20.46 16 41 H 0.25 15.28 8.31 -92.71 -0.77 14.51 16 42 H 0.05 1.45 7.53 -2.39 -0.02 1.43 16 43 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.04 1.15 5.78 -2.39 -0.01 1.14 16 45 H 0.06 1.47 6.54 -2.39 -0.02 1.45 16 46 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 47 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 48 H 0.04 1.22 7.60 -2.38 -0.02 1.20 16 49 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 50 H 0.06 1.52 6.32 -2.39 -0.02 1.51 16 Total: -1.00 -75.00 405.74 4.06 -70.94 By element: Atomic # 1 Polarization: 42.81 SS G_CDS: -0.50 Total: 42.31 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: 7.17 Total: 5.63 kcal Atomic # 7 Polarization: -142.89 SS G_CDS: -4.58 Total: -147.47 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: -0.06 Total: -20.77 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 2.03 Total: 49.37 kcal Total: -75.00 4.06 -70.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571634160.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.370 kcal (2) G-P(sol) polarization free energy of solvation -74.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds