Wall clock time and date at job start Tue Mar 31 2020 19:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30291 * 126.35143 * 2 1 4 4 N 1.28531 * 110.05517 * 179.97438 * 3 2 1 5 5 C 1.31221 * 109.85652 * 359.73966 * 4 3 2 6 6 N 1.38582 * 126.46989 * 180.26182 * 5 4 3 7 7 C 1.46895 * 110.99874 * 98.99705 * 6 5 4 8 8 C 1.46899 * 111.00024 * 335.04381 * 6 5 4 9 9 H 1.09004 * 109.47075 * 60.00239 * 8 6 5 10 10 C 1.53001 * 109.47441 * 300.00090 * 8 6 5 11 11 C 1.50702 * 109.47133 * 180.02562 * 8 6 5 12 12 H 1.07993 * 119.99872 * 359.97438 * 11 8 6 13 13 C 1.37879 * 119.99968 * 180.02562 * 11 8 6 14 14 N 1.31513 * 119.99860 * 359.97438 * 13 11 8 15 15 Si 1.86807 * 119.99851 * 179.97438 * 13 11 8 16 16 H 1.48499 * 109.46684 * 90.00073 * 15 13 11 17 17 H 1.48492 * 109.46971 * 209.99751 * 15 13 11 18 18 H 1.48497 * 109.47156 * 330.00371 * 15 13 11 19 19 N 1.36449 * 107.05490 * 0.40627 * 5 4 3 20 20 C 1.46499 * 127.13439 * 179.86754 * 19 5 4 21 21 C 1.53000 * 109.47488 * 263.91850 * 20 19 5 22 22 H 1.09000 * 110.08861 * 306.59780 * 21 20 19 23 23 C 1.56020 * 110.11331 * 185.00333 * 21 20 19 24 24 C 1.50705 * 102.78760 * 247.26337 * 23 21 20 25 25 H 1.08990 * 110.15327 * 81.63810 * 24 23 21 26 26 C 1.50430 * 125.56348 * 217.11269 * 24 23 21 27 27 O 1.45491 * 105.21427 * 143.11958 * 26 24 23 28 28 C 1.45979 * 109.05765 * 353.15680 * 27 26 24 29 29 C 1.50686 * 102.70623 * 334.69140 * 28 27 26 30 30 H 1.08994 * 109.94011 * 291.52938 * 29 28 27 31 31 N 1.44080 * 127.43111 * 154.25945 * 29 28 27 32 32 H 1.09000 * 109.46958 * 270.04226 * 1 2 3 33 33 H 1.09009 * 109.46896 * 30.03779 * 1 2 3 34 34 H 1.08995 * 109.47624 * 150.03982 * 1 2 3 35 35 H 1.09004 * 109.47411 * 61.54507 * 7 6 5 36 36 H 1.09008 * 109.47228 * 181.54028 * 7 6 5 37 37 H 1.08995 * 109.47827 * 301.53911 * 7 6 5 38 38 H 1.09004 * 109.47107 * 300.00129 * 10 8 6 39 39 H 1.09002 * 109.46643 * 59.99743 * 10 8 6 40 40 H 1.08994 * 109.47486 * 180.02562 * 10 8 6 41 41 H 0.97002 * 119.99583 * 179.97438 * 14 13 11 42 42 H 1.09001 * 109.47103 * 143.91445 * 20 19 5 43 43 H 1.08997 * 109.46931 * 23.92046 * 20 19 5 44 44 H 1.08999 * 110.74880 * 5.58826 * 23 21 20 45 45 H 1.08997 * 110.74944 * 128.93618 * 23 21 20 46 46 H 1.09000 * 110.30013 * 24.18240 * 26 24 23 47 47 H 1.09003 * 110.29746 * 262.04902 * 26 24 23 48 48 H 1.09000 * 110.76436 * 216.38990 * 28 27 26 49 49 H 1.08997 * 110.76410 * 92.99751 * 28 27 26 50 50 H 1.00904 * 110.99586 * 84.36935 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2793 1.0494 0.0000 4 7 3.5129 0.6887 0.0005 5 6 3.5944 -0.6210 0.0065 6 7 4.7578 -1.3739 0.0140 7 6 5.0783 -1.8340 1.3717 8 6 5.8775 -0.6186 -0.5638 9 1 6.0437 0.2875 0.0190 10 6 5.5464 -0.2416 -2.0092 11 6 7.1222 -1.4678 -0.5392 12 1 7.0853 -2.4683 -0.1344 13 6 8.3083 -0.9670 -1.0325 14 7 8.3533 0.2516 -1.5250 15 14 9.8513 -2.0194 -1.0014 16 1 9.9441 -2.7993 -2.2617 17 1 11.0444 -1.1449 -0.8715 18 1 9.7921 -2.9507 0.1538 19 7 2.3173 -1.1014 0.0007 20 6 1.9008 -2.5059 0.0013 21 6 1.6169 -2.9544 -1.4337 22 1 0.9075 -2.2743 -1.9051 23 6 1.0511 -4.4084 -1.4394 24 6 2.1535 -5.1927 -2.1033 25 1 2.9324 -5.4322 -1.3796 26 6 1.9592 -6.3424 -3.0539 27 8 3.0152 -6.2013 -4.0446 28 6 3.7160 -4.9409 -3.8182 29 6 2.6740 -4.1025 -3.1239 30 1 1.8690 -3.8604 -3.8177 31 7 2.8950 -2.9996 -2.2235 32 1 -0.3633 0.0008 1.0277 33 1 -0.3633 0.8897 -0.5145 34 1 -0.3634 -0.8903 -0.5132 35 1 4.2739 -2.4716 1.7387 36 1 6.0102 -2.3993 1.3534 37 1 5.1887 -0.9729 2.0308 38 1 5.3801 -1.1476 -2.5920 39 1 4.6460 0.3725 -2.0274 40 1 6.3773 0.3184 -2.4381 41 1 9.1878 0.6041 -1.8718 42 1 0.9980 -2.6169 0.6020 43 1 2.6959 -3.1205 0.4235 44 1 0.8845 -4.7619 -0.4219 45 1 0.1325 -4.4630 -2.0235 46 1 0.9815 -6.2770 -3.5315 47 1 2.0603 -7.2907 -2.5260 48 1 4.0098 -4.4867 -4.7645 49 1 4.5829 -5.0909 -3.1747 50 1 3.0359 -2.1399 -2.7326 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001579900328.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:40:53 Heat of formation + Delta-G solvation = 83.087803 kcal Electronic energy + Delta-G solvation = -31483.765440 eV Core-core repulsion = 27549.040509 eV Total energy + Delta-G solvation = -3934.724931 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.45904 -40.80256 -37.17396 -36.97938 -34.49613 -32.89669 -31.50504 -31.39039 -30.27799 -29.15223 -27.92336 -27.37756 -26.25706 -25.20143 -24.21514 -22.22923 -21.79398 -20.97372 -20.58807 -20.07547 -19.37905 -17.47461 -16.59242 -16.35546 -16.00963 -15.94318 -15.51356 -15.21492 -14.94046 -14.56829 -14.34075 -14.04946 -13.79858 -13.72198 -13.22056 -13.03943 -12.77105 -12.69412 -12.65790 -12.42408 -12.24202 -12.07413 -12.01776 -11.77801 -11.44103 -11.05625 -10.99355 -10.89504 -10.86724 -10.63773 -10.41549 -10.25265 -10.15714 -10.01223 -9.87531 -9.80065 -9.64596 -9.09726 -8.61321 -8.51766 -8.39145 -7.35357 -5.99365 -4.05485 2.25215 2.69562 3.31653 3.34710 3.38466 3.40211 3.44589 3.66931 4.06038 4.37084 4.43172 4.48726 4.57996 4.65969 4.77311 4.81591 4.96292 5.03948 5.06408 5.13524 5.20299 5.29451 5.32765 5.36422 5.42609 5.48812 5.50890 5.65235 5.70416 5.74200 5.80204 5.87003 5.96077 6.00710 6.18650 6.26511 6.40364 6.47602 6.59567 6.70252 6.98081 7.02241 7.16636 7.22653 7.29208 7.53586 7.77320 7.81895 8.05339 8.30815 8.55780 8.96951 9.39662 9.58613 11.07088 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.008616 B = 0.005362 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3249.070045 B = 5220.923343 C = 7654.786587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.138 3.862 3 N -0.289 5.289 4 N -0.323 5.323 5 C 0.396 3.604 6 N -0.448 5.448 7 C 0.044 3.956 8 C 0.232 3.768 9 H 0.020 0.980 10 C -0.127 4.127 11 C -0.508 4.508 12 H 0.064 0.936 13 C 0.063 3.937 14 N -0.886 5.886 15 Si 0.897 3.103 16 H -0.281 1.281 17 H -0.288 1.288 18 H -0.275 1.275 19 N -0.479 5.479 20 C 0.130 3.870 21 C 0.055 3.945 22 H 0.059 0.941 23 C -0.097 4.097 24 C -0.146 4.146 25 H 0.098 0.902 26 C 0.068 3.932 27 O -0.389 6.389 28 C 0.073 3.927 29 C 0.025 3.975 30 H 0.044 0.956 31 N -0.610 5.610 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.068 0.932 35 H 0.041 0.959 36 H 0.096 0.904 37 H 0.024 0.976 38 H 0.029 0.971 39 H 0.013 0.987 40 H 0.085 0.915 41 H 0.261 0.739 42 H 0.088 0.912 43 H 0.107 0.893 44 H 0.081 0.919 45 H 0.074 0.926 46 H 0.065 0.935 47 H 0.077 0.923 48 H 0.089 0.911 49 H 0.082 0.918 50 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.227 -11.005 0.659 21.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.129 4.129 3 N -0.129 5.129 4 N -0.166 5.166 5 C 0.041 3.959 6 N -0.173 5.173 7 C -0.103 4.103 8 C 0.128 3.872 9 H 0.038 0.962 10 C -0.185 4.185 11 C -0.547 4.547 12 H 0.082 0.918 13 C -0.139 4.139 14 N -0.524 5.524 15 Si 0.725 3.275 16 H -0.207 1.207 17 H -0.214 1.214 18 H -0.200 1.200 19 N -0.175 5.175 20 C 0.006 3.994 21 C -0.055 4.055 22 H 0.077 0.923 23 C -0.136 4.136 24 C -0.165 4.165 25 H 0.116 0.884 26 C -0.008 4.008 27 O -0.308 6.308 28 C -0.003 4.003 29 C -0.087 4.087 30 H 0.062 0.938 31 N -0.240 5.240 32 H 0.095 0.905 33 H 0.107 0.893 34 H 0.087 0.913 35 H 0.060 0.940 36 H 0.114 0.886 37 H 0.043 0.957 38 H 0.048 0.952 39 H 0.032 0.968 40 H 0.104 0.896 41 H 0.071 0.929 42 H 0.106 0.894 43 H 0.126 0.874 44 H 0.099 0.901 45 H 0.093 0.907 46 H 0.083 0.917 47 H 0.096 0.904 48 H 0.108 0.892 49 H 0.100 0.900 50 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -17.197 -10.328 0.616 20.070 hybrid contribution -0.078 -0.704 -0.194 0.734 sum -17.275 -11.032 0.423 20.501 Atomic orbital electron populations 1.20037 0.84736 1.03565 1.03123 1.24528 0.96105 0.83172 1.09080 1.73949 0.97175 1.24367 1.17456 1.74817 1.10605 1.08344 1.22844 1.23011 0.85448 0.88659 0.98794 1.59092 1.00918 1.37580 1.19759 1.22275 1.01884 0.99221 0.86967 1.19271 0.84100 0.91800 0.92078 0.96211 1.21752 0.99721 0.98897 0.98172 1.21047 0.92242 1.00446 1.40963 0.91773 1.24885 0.98786 0.95011 0.95236 1.69923 1.26633 1.15189 1.40657 0.86517 0.82545 0.80036 0.78372 1.20714 1.21350 1.19965 1.46238 1.06446 1.07429 1.57408 1.21807 1.01883 0.79252 0.96446 1.23495 0.90987 0.96346 0.94679 0.92270 1.21681 0.97299 0.92884 1.01735 1.22685 1.00294 0.94958 0.98538 0.88390 1.22204 0.91424 0.97719 0.89486 1.89337 1.48347 1.39498 1.53611 1.22404 0.94203 0.83016 1.00685 1.22975 0.97797 0.93348 0.94593 0.93766 1.62634 1.31586 1.06528 1.23302 0.90479 0.89315 0.91343 0.93983 0.88594 0.95685 0.95157 0.96816 0.89608 0.92885 0.89410 0.87440 0.90064 0.90696 0.91701 0.90435 0.89236 0.90012 0.83726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.54 10.20 36.00 0.37 -0.17 16 2 C 0.14 2.15 8.07 -154.02 -1.24 0.91 16 3 N -0.29 -5.86 12.18 32.99 0.40 -5.46 16 4 N -0.32 -7.37 10.29 30.31 0.31 -7.06 16 5 C 0.40 7.94 5.92 -318.87 -1.89 6.05 16 6 N -0.45 -9.39 4.61 -176.08 -0.81 -10.20 16 7 C 0.04 0.83 9.25 60.06 0.56 1.39 16 8 C 0.23 5.86 1.74 -68.86 -0.12 5.74 16 9 H 0.02 0.59 7.89 -51.93 -0.41 0.18 16 10 C -0.13 -3.21 8.81 37.16 0.33 -2.88 16 11 C -0.51 -13.42 7.86 -34.44 -0.27 -13.69 16 12 H 0.06 1.65 6.41 -52.49 -0.34 1.32 16 13 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 14 N -0.89 -25.28 11.32 55.43 0.63 -24.65 16 15 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 16 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 17 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 19 N -0.48 -7.41 2.80 -114.09 -0.32 -7.73 16 20 C 0.13 1.45 5.35 -4.04 -0.02 1.43 16 21 C 0.06 0.56 3.52 -64.18 -0.23 0.34 16 22 H 0.06 0.59 7.91 -51.93 -0.41 0.18 16 23 C -0.10 -0.74 6.40 -26.26 -0.17 -0.91 16 24 C -0.15 -1.40 3.07 -90.22 -0.28 -1.67 16 25 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 26 C 0.07 0.65 7.63 35.87 0.27 0.92 16 27 O -0.39 -4.95 11.59 -35.23 -0.41 -5.36 16 28 C 0.07 0.92 7.63 36.00 0.27 1.19 16 29 C 0.02 0.29 3.49 -67.54 -0.24 0.05 16 30 H 0.04 0.50 8.09 -51.93 -0.42 0.08 16 31 N -0.61 -8.05 7.16 -95.75 -0.69 -8.73 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.09 0.82 8.14 -51.92 -0.42 0.40 16 34 H 0.07 0.50 7.74 -51.93 -0.40 0.10 16 35 H 0.04 0.66 7.22 -51.93 -0.37 0.28 16 36 H 0.10 1.87 6.05 -51.92 -0.31 1.56 16 37 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.01 0.33 6.40 -51.93 -0.33 -0.01 16 40 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 41 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 42 H 0.09 0.70 8.08 -51.93 -0.42 0.28 16 43 H 0.11 1.33 7.15 -51.93 -0.37 0.96 16 44 H 0.08 0.49 7.76 -51.93 -0.40 0.09 16 45 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 49 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 50 H 0.35 5.27 8.90 -39.29 -0.35 4.92 16 LS Contribution 390.46 15.07 5.88 5.88 Total: -1.00 -32.29 390.46 -10.99 -43.28 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -8.22 Total: 3.76 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: -2.75 Total: 0.31 kcal Atomic # 7 Polarization: -63.35 SS G_CDS: -0.48 Total: -63.83 kcal Atomic # 8 Polarization: -4.95 SS G_CDS: -0.41 Total: -5.36 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.29 -10.99 -43.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001579900328.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.363 kcal (2) G-P(sol) polarization free energy of solvation -32.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds