Wall clock time and date at job start Tue Mar 31 2020 19:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30291 * 126.35143 * 2 1 4 4 N 1.28531 * 110.05517 * 179.97438 * 3 2 1 5 5 C 1.31221 * 109.85652 * 359.73966 * 4 3 2 6 6 N 1.38582 * 126.46989 * 180.26182 * 5 4 3 7 7 C 1.46895 * 110.99874 * 98.99705 * 6 5 4 8 8 C 1.46899 * 111.00024 * 335.04381 * 6 5 4 9 9 H 1.09004 * 109.47075 * 60.00239 * 8 6 5 10 10 C 1.53001 * 109.47441 * 300.00090 * 8 6 5 11 11 C 1.50702 * 109.47133 * 180.02562 * 8 6 5 12 12 H 1.07993 * 119.99872 * 359.97438 * 11 8 6 13 13 C 1.37879 * 119.99968 * 180.02562 * 11 8 6 14 14 N 1.31513 * 119.99860 * 359.97438 * 13 11 8 15 15 Si 1.86807 * 119.99851 * 179.97438 * 13 11 8 16 16 H 1.48499 * 109.46684 * 90.00073 * 15 13 11 17 17 H 1.48492 * 109.46971 * 209.99751 * 15 13 11 18 18 H 1.48497 * 109.47156 * 330.00371 * 15 13 11 19 19 N 1.36449 * 107.05490 * 0.40627 * 5 4 3 20 20 C 1.46499 * 127.13439 * 179.86754 * 19 5 4 21 21 C 1.53000 * 109.47488 * 263.91850 * 20 19 5 22 22 H 1.09000 * 110.08861 * 306.59780 * 21 20 19 23 23 C 1.56020 * 110.11331 * 185.00333 * 21 20 19 24 24 C 1.50705 * 102.78760 * 247.26337 * 23 21 20 25 25 H 1.08990 * 110.15327 * 81.63810 * 24 23 21 26 26 C 1.50430 * 125.56348 * 217.11269 * 24 23 21 27 27 O 1.45491 * 105.21427 * 143.11958 * 26 24 23 28 28 C 1.45979 * 109.05765 * 353.15680 * 27 26 24 29 29 C 1.50686 * 102.70623 * 334.69140 * 28 27 26 30 30 H 1.08994 * 109.94011 * 291.52938 * 29 28 27 31 31 N 1.44080 * 127.43111 * 154.25945 * 29 28 27 32 32 H 1.09000 * 109.46958 * 270.04226 * 1 2 3 33 33 H 1.09009 * 109.46896 * 30.03779 * 1 2 3 34 34 H 1.08995 * 109.47624 * 150.03982 * 1 2 3 35 35 H 1.09004 * 109.47411 * 61.54507 * 7 6 5 36 36 H 1.09008 * 109.47228 * 181.54028 * 7 6 5 37 37 H 1.08995 * 109.47827 * 301.53911 * 7 6 5 38 38 H 1.09004 * 109.47107 * 300.00129 * 10 8 6 39 39 H 1.09002 * 109.46643 * 59.99743 * 10 8 6 40 40 H 1.08994 * 109.47486 * 180.02562 * 10 8 6 41 41 H 0.97002 * 119.99583 * 179.97438 * 14 13 11 42 42 H 1.09001 * 109.47103 * 143.91445 * 20 19 5 43 43 H 1.08997 * 109.46931 * 23.92046 * 20 19 5 44 44 H 1.08999 * 110.74880 * 5.58826 * 23 21 20 45 45 H 1.08997 * 110.74944 * 128.93618 * 23 21 20 46 46 H 1.09000 * 110.30013 * 24.18240 * 26 24 23 47 47 H 1.09003 * 110.29746 * 262.04902 * 26 24 23 48 48 H 1.09000 * 110.76436 * 216.38990 * 28 27 26 49 49 H 1.08997 * 110.76410 * 92.99751 * 28 27 26 50 50 H 1.00904 * 110.99586 * 84.36935 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2793 1.0494 0.0000 4 7 3.5129 0.6887 0.0005 5 6 3.5944 -0.6210 0.0065 6 7 4.7578 -1.3739 0.0140 7 6 5.0783 -1.8340 1.3717 8 6 5.8775 -0.6186 -0.5638 9 1 6.0437 0.2875 0.0190 10 6 5.5464 -0.2416 -2.0092 11 6 7.1222 -1.4678 -0.5392 12 1 7.0853 -2.4683 -0.1344 13 6 8.3083 -0.9670 -1.0325 14 7 8.3533 0.2516 -1.5250 15 14 9.8513 -2.0194 -1.0014 16 1 9.9441 -2.7993 -2.2617 17 1 11.0444 -1.1449 -0.8715 18 1 9.7921 -2.9507 0.1538 19 7 2.3173 -1.1014 0.0007 20 6 1.9008 -2.5059 0.0013 21 6 1.6169 -2.9544 -1.4337 22 1 0.9075 -2.2743 -1.9051 23 6 1.0511 -4.4084 -1.4394 24 6 2.1535 -5.1927 -2.1033 25 1 2.9324 -5.4322 -1.3796 26 6 1.9592 -6.3424 -3.0539 27 8 3.0152 -6.2013 -4.0446 28 6 3.7160 -4.9409 -3.8182 29 6 2.6740 -4.1025 -3.1239 30 1 1.8690 -3.8604 -3.8177 31 7 2.8950 -2.9996 -2.2235 32 1 -0.3633 0.0008 1.0277 33 1 -0.3633 0.8897 -0.5145 34 1 -0.3634 -0.8903 -0.5132 35 1 4.2739 -2.4716 1.7387 36 1 6.0102 -2.3993 1.3534 37 1 5.1887 -0.9729 2.0308 38 1 5.3801 -1.1476 -2.5920 39 1 4.6460 0.3725 -2.0274 40 1 6.3773 0.3184 -2.4381 41 1 9.1878 0.6041 -1.8718 42 1 0.9980 -2.6169 0.6020 43 1 2.6959 -3.1205 0.4235 44 1 0.8845 -4.7619 -0.4219 45 1 0.1325 -4.4630 -2.0235 46 1 0.9815 -6.2770 -3.5315 47 1 2.0603 -7.2907 -2.5260 48 1 4.0098 -4.4867 -4.7645 49 1 4.5829 -5.0909 -3.1747 50 1 3.0359 -2.1399 -2.7326 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001579900328.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:40:52 Heat of formation + Delta-G solvation = 60.702066 kcal Electronic energy + Delta-G solvation = -31484.736158 eV Core-core repulsion = 27549.040509 eV Total energy + Delta-G solvation = -3935.695649 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.83103 -41.64724 -38.72315 -38.08121 -35.68504 -34.84682 -32.58465 -32.30204 -31.39451 -30.98154 -28.91586 -28.63001 -27.13891 -27.10076 -25.90390 -23.52944 -23.13527 -21.92141 -21.49150 -21.13076 -20.93802 -18.55214 -18.22078 -17.53228 -17.47423 -17.11252 -16.73971 -16.38775 -16.29238 -15.89591 -15.49803 -15.36411 -15.04630 -14.78106 -14.55384 -14.23828 -14.06303 -13.88617 -13.49965 -13.43048 -13.35389 -13.20844 -12.96341 -12.89740 -12.85744 -12.69944 -12.65303 -12.43313 -12.17470 -12.06362 -12.03080 -11.99178 -11.74959 -11.37996 -11.20834 -10.99859 -10.92409 -10.62358 -10.52352 -10.11960 -9.53239 -9.02700 -8.08989 -6.22309 0.95150 1.43511 1.45779 1.48847 1.56464 1.99949 2.43620 2.51493 2.82594 3.09741 3.21536 3.25479 3.60933 3.70466 3.76927 3.87538 3.95296 4.09290 4.19058 4.22369 4.28855 4.32260 4.41760 4.50188 4.51217 4.59805 4.72093 4.75458 4.76543 4.80009 4.87206 4.89305 4.90185 4.92234 5.01562 5.02614 5.09765 5.12377 5.17437 5.23189 5.27920 5.51516 5.58633 5.68859 5.72243 5.84208 6.04138 6.12460 6.17686 6.24331 6.75865 6.88573 7.45802 7.97615 8.97792 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.008616 B = 0.005362 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3249.070045 B = 5220.923343 C = 7654.786587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.168 3.832 3 N -0.343 5.343 4 N -0.378 5.378 5 C 0.379 3.621 6 N -0.439 5.439 7 C 0.046 3.954 8 C 0.246 3.754 9 H -0.032 1.032 10 C -0.103 4.103 11 C -0.515 4.515 12 H 0.071 0.929 13 C 0.012 3.988 14 N -0.921 5.921 15 Si 0.964 3.036 16 H -0.277 1.277 17 H -0.289 1.289 18 H -0.262 1.262 19 N -0.468 5.468 20 C 0.122 3.878 21 C 0.057 3.943 22 H 0.068 0.932 23 C -0.083 4.083 24 C -0.131 4.131 25 H 0.080 0.920 26 C 0.064 3.936 27 O -0.409 6.409 28 C 0.072 3.928 29 C 0.019 3.981 30 H 0.051 0.949 31 N -0.634 5.634 32 H 0.103 0.897 33 H 0.093 0.907 34 H 0.104 0.896 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.006 0.994 38 H 0.033 0.967 39 H 0.008 0.992 40 H 0.055 0.945 41 H 0.261 0.739 42 H 0.136 0.864 43 H 0.097 0.903 44 H 0.107 0.893 45 H 0.099 0.901 46 H 0.085 0.915 47 H 0.091 0.909 48 H 0.086 0.914 49 H 0.061 0.939 50 H 0.327 0.673 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.517 -13.897 1.497 25.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.101 4.101 3 N -0.182 5.182 4 N -0.221 5.221 5 C 0.022 3.978 6 N -0.164 5.164 7 C -0.101 4.101 8 C 0.140 3.860 9 H -0.015 1.015 10 C -0.161 4.161 11 C -0.553 4.553 12 H 0.089 0.911 13 C -0.187 4.187 14 N -0.560 5.560 15 Si 0.790 3.210 16 H -0.203 1.203 17 H -0.215 1.215 18 H -0.186 1.186 19 N -0.162 5.162 20 C 0.000 4.000 21 C -0.053 4.053 22 H 0.086 0.914 23 C -0.121 4.121 24 C -0.150 4.150 25 H 0.098 0.902 26 C -0.011 4.011 27 O -0.329 6.329 28 C -0.005 4.005 29 C -0.093 4.093 30 H 0.069 0.931 31 N -0.263 5.263 32 H 0.121 0.879 33 H 0.112 0.888 34 H 0.123 0.877 35 H 0.099 0.901 36 H 0.106 0.894 37 H 0.025 0.975 38 H 0.052 0.948 39 H 0.027 0.973 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.154 0.846 43 H 0.115 0.885 44 H 0.125 0.875 45 H 0.117 0.883 46 H 0.103 0.897 47 H 0.109 0.891 48 H 0.104 0.896 49 H 0.080 0.920 50 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -20.532 -13.261 1.475 24.487 hybrid contribution 0.811 0.191 -0.434 0.939 sum -19.721 -13.070 1.041 23.682 Atomic orbital electron populations 1.20392 0.79976 1.05632 1.05402 1.25684 0.98192 0.81930 1.04294 1.73846 0.96850 1.26703 1.20843 1.74669 1.12658 1.10375 1.24438 1.22782 0.86530 0.88297 1.00234 1.58991 1.00145 1.36579 1.20638 1.22308 1.03066 0.98837 0.85881 1.18831 0.85800 0.90130 0.91250 1.01465 1.21446 0.98066 0.98293 0.98330 1.21322 0.92836 1.00654 1.40506 0.91093 1.25737 1.02009 0.96068 0.94865 1.70088 1.27298 1.16993 1.41655 0.85463 0.78412 0.78409 0.78765 1.20259 1.21457 1.18598 1.46391 1.04484 1.09269 1.56087 1.22292 1.03455 0.76304 0.97973 1.23595 0.89875 0.98480 0.93389 0.91372 1.21695 0.96986 0.90006 1.03449 1.22631 1.00684 0.94140 0.97558 0.90157 1.22425 0.91332 0.98275 0.89108 1.89309 1.49324 1.39356 1.54919 1.22299 0.94175 0.83656 1.00339 1.22920 0.97446 0.93596 0.95324 0.93091 1.62645 1.34012 1.05866 1.23797 0.87877 0.88820 0.87717 0.90082 0.89393 0.97543 0.94768 0.97303 0.92591 0.93030 0.84633 0.88462 0.87499 0.88250 0.89732 0.89083 0.89601 0.92041 0.85817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.81 10.20 71.24 0.73 -0.08 16 2 C 0.17 4.87 8.07 137.64 1.11 5.98 16 3 N -0.34 -14.06 12.18 -49.54 -0.60 -14.66 16 4 N -0.38 -18.00 10.29 -58.00 -0.60 -18.60 16 5 C 0.38 15.40 5.92 260.11 1.54 16.94 16 6 N -0.44 -18.83 4.61 -710.99 -3.28 -22.11 16 7 C 0.05 1.77 9.25 127.69 1.18 2.95 16 8 C 0.25 13.07 1.74 44.17 0.08 13.15 16 9 H -0.03 -2.03 7.89 -2.39 -0.02 -2.05 16 10 C -0.10 -5.50 8.81 71.98 0.63 -4.87 16 11 C -0.51 -28.01 7.86 25.60 0.20 -27.81 16 12 H 0.07 3.69 6.41 -2.91 -0.02 3.68 16 13 C 0.01 0.67 5.30 84.66 0.45 1.12 16 14 N -0.92 -54.88 11.32 21.45 0.24 -54.63 16 15 Si 0.96 43.74 29.54 68.60 2.03 45.76 16 16 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 17 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 18 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 19 N -0.47 -13.55 2.80 -514.86 -1.44 -14.99 16 20 C 0.12 2.22 5.35 86.38 0.46 2.69 16 21 C 0.06 0.94 3.52 45.29 0.16 1.10 16 22 H 0.07 1.05 7.91 -2.39 -0.02 1.03 16 23 C -0.08 -0.84 6.40 30.90 0.20 -0.64 16 24 C -0.13 -2.13 3.07 -10.53 -0.03 -2.16 16 25 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 26 C 0.06 1.04 7.63 71.15 0.54 1.58 16 27 O -0.41 -10.01 11.59 -148.98 -1.73 -11.74 16 28 C 0.07 1.81 7.63 71.23 0.54 2.36 16 29 C 0.02 0.41 3.49 46.53 0.16 0.57 16 30 H 0.05 1.05 8.09 -2.39 -0.02 1.03 16 31 N -0.63 -16.06 7.16 -456.85 -3.27 -19.33 16 32 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 34 H 0.10 0.84 7.74 -2.39 -0.02 0.82 16 35 H 0.08 2.41 7.22 -2.39 -0.02 2.40 16 36 H 0.09 3.46 6.05 -2.38 -0.01 3.44 16 37 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 38 H 0.03 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.01 0.43 6.40 -2.39 -0.02 0.42 16 40 H 0.06 3.31 6.07 -2.39 -0.01 3.29 16 41 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 42 H 0.14 1.25 8.08 -2.39 -0.02 1.23 16 43 H 0.10 2.06 7.15 -2.39 -0.02 2.04 16 44 H 0.11 0.61 7.76 -2.39 -0.02 0.60 16 45 H 0.10 0.62 8.14 -2.39 -0.02 0.61 16 46 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 48 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 49 H 0.06 1.75 8.14 -2.39 -0.02 1.74 16 50 H 0.33 10.03 8.90 -89.69 -0.80 9.23 16 Total: -1.00 -77.52 390.46 -0.55 -78.07 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: 0.15 Total: 19.35 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: 7.96 Total: 12.89 kcal Atomic # 7 Polarization: -135.38 SS G_CDS: -8.95 Total: -144.33 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: -1.73 Total: -11.74 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Total: -77.52 -0.55 -78.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001579900328.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.768 kcal (2) G-P(sol) polarization free energy of solvation -77.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds