Wall clock time and date at job start Tue Mar 31 2020 19:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30293 * 126.34586 * 2 1 4 4 N 1.28532 * 110.05380 * 180.02562 * 3 2 1 5 5 C 1.31219 * 109.85591 * 359.97438 * 4 3 2 6 6 N 1.38580 * 126.47320 * 179.97438 * 5 4 3 7 7 C 1.46907 * 111.00048 * 306.07021 * 6 5 4 8 8 C 1.46904 * 110.99830 * 70.02307 * 6 5 4 9 9 H 1.08996 * 109.47157 * 55.00010 * 8 6 5 10 10 C 1.53001 * 109.47233 * 295.00116 * 8 6 5 11 11 C 1.50702 * 109.47045 * 175.00309 * 8 6 5 12 12 H 1.08001 * 120.00327 * 4.77671 * 11 8 6 13 13 C 1.37882 * 119.99655 * 184.78075 * 11 8 6 14 14 N 1.31507 * 120.00154 * 7.81962 * 13 11 8 15 15 Si 1.86800 * 119.99658 * 187.81481 * 13 11 8 16 16 H 1.48494 * 109.46906 * 94.96262 * 15 13 11 17 17 H 1.48506 * 109.46934 * 214.96006 * 15 13 11 18 18 H 1.48497 * 109.47364 * 334.95761 * 15 13 11 19 19 N 1.36453 * 107.05656 * 0.22779 * 5 4 3 20 20 C 1.46501 * 127.13874 * 179.77050 * 19 5 4 21 21 C 1.53004 * 109.46914 * 85.32492 * 20 19 5 22 22 H 1.09004 * 110.59586 * 303.44218 * 21 20 19 23 23 C 1.54898 * 110.67023 * 180.24945 * 21 20 19 24 24 C 1.54397 * 103.01366 * 203.72754 * 23 21 20 25 25 H 1.09002 * 113.03359 * 259.24775 * 24 23 21 26 26 C 1.54338 * 108.94069 * 133.30343 * 24 23 21 27 27 O 1.44416 * 104.75563 * 223.58232 * 26 24 23 28 28 C 1.44360 * 105.26317 * 41.01757 * 27 26 24 29 29 C 1.54487 * 105.02255 * 319.63427 * 28 27 26 30 30 H 1.09004 * 112.08479 * 260.85714 * 29 28 27 31 31 N 1.47860 * 108.62770 * 136.54313 * 29 28 27 32 32 H 1.09000 * 109.47386 * 89.97112 * 1 2 3 33 33 H 1.08992 * 109.47226 * 209.97358 * 1 2 3 34 34 H 1.09006 * 109.46941 * 329.97704 * 1 2 3 35 35 H 1.08998 * 109.46482 * 177.64105 * 7 6 5 36 36 H 1.08998 * 109.46731 * 297.64365 * 7 6 5 37 37 H 1.08993 * 109.46778 * 57.64514 * 7 6 5 38 38 H 1.09001 * 109.46872 * 301.37376 * 10 8 6 39 39 H 1.09003 * 109.47198 * 61.36221 * 10 8 6 40 40 H 1.08997 * 109.47762 * 181.37011 * 10 8 6 41 41 H 0.97002 * 120.00320 * 179.97438 * 14 13 11 42 42 H 1.09002 * 109.47119 * 205.32681 * 20 19 5 43 43 H 1.09005 * 109.47244 * 325.32734 * 20 19 5 44 44 H 1.09006 * 110.70457 * 322.10254 * 23 21 20 45 45 H 1.08996 * 110.71360 * 85.33944 * 23 21 20 46 46 H 1.09003 * 110.37931 * 104.75940 * 26 24 23 47 47 H 1.09002 * 110.47284 * 342.45447 * 26 24 23 48 48 H 1.09003 * 110.33116 * 200.73996 * 28 27 26 49 49 H 1.09004 * 110.32756 * 78.51753 * 28 27 26 50 50 H 1.00901 * 111.00137 * 102.84445 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2792 1.0494 0.0000 4 7 3.5130 0.6889 -0.0005 5 6 3.5945 -0.6208 -0.0004 6 7 4.7579 -1.3737 -0.0013 7 6 5.6376 -0.9820 -1.1108 8 6 5.4557 -1.2661 1.2870 9 1 4.7761 -1.5440 2.0926 10 6 5.9279 0.1746 1.4925 11 6 6.6459 -2.1905 1.2924 12 1 6.9076 -2.7392 0.3997 13 6 7.4007 -2.3357 2.4371 14 7 6.9973 -1.7915 3.5642 15 14 8.9963 -3.3057 2.3868 16 1 10.1347 -2.3754 2.1785 17 1 9.1766 -4.0289 3.6712 18 1 8.9459 -4.2841 1.2708 19 7 2.3174 -1.1013 -0.0049 20 6 1.9009 -2.5059 -0.0111 21 6 1.8657 -3.0337 1.4246 22 1 2.8355 -2.9038 1.9048 23 6 1.4339 -4.5211 1.4498 24 6 0.8686 -4.6949 2.8761 25 1 1.5701 -5.1768 3.5571 26 6 -0.4817 -5.4377 2.7927 27 8 -1.3501 -4.7252 3.7004 28 6 -1.0551 -3.3278 3.4905 29 6 0.4801 -3.2623 3.3305 30 1 0.9756 -2.9584 4.2526 31 7 0.7995 -2.3575 2.2054 32 1 -0.3634 0.0005 -1.0276 33 1 -0.3633 -0.8902 0.5134 34 1 -0.3633 0.8898 0.5142 35 1 6.5611 -1.5592 -1.0633 36 1 5.1357 -1.1768 -2.0585 37 1 5.8687 0.0803 -1.0335 38 1 6.5883 0.4607 0.6738 39 1 5.0651 0.8404 1.5127 40 1 6.4668 0.2492 2.4370 41 1 7.5281 -1.8940 4.3696 42 1 0.9079 -2.5884 -0.4531 43 1 2.6091 -3.0923 -0.5965 44 1 0.6622 -4.7111 0.7037 45 1 2.2921 -5.1744 1.2931 46 1 -0.3656 -6.4733 3.1125 47 1 -0.8774 -5.3967 1.7779 48 1 -1.3716 -2.7403 4.3523 49 1 -1.5458 -2.9690 2.5857 50 1 1.1121 -1.4589 2.5415 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001579900330.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:01 Heat of formation + Delta-G solvation = 58.950745 kcal Electronic energy + Delta-G solvation = -31293.131102 eV Core-core repulsion = 27357.359510 eV Total energy + Delta-G solvation = -3935.771592 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.48613 -40.39181 -37.25663 -37.04315 -34.39465 -32.94781 -31.59725 -31.32392 -30.28808 -28.87961 -27.50642 -27.02092 -25.95546 -25.23976 -25.11728 -22.70256 -21.62688 -20.97614 -20.38018 -20.13641 -19.18601 -17.59309 -16.65969 -16.36576 -16.04772 -15.76505 -15.55395 -15.46102 -15.16411 -14.66408 -14.40241 -13.86427 -13.71817 -13.46603 -13.24533 -13.14713 -12.64122 -12.50072 -12.30833 -12.19586 -12.04465 -11.97827 -11.76776 -11.59948 -11.36375 -11.24943 -11.16114 -11.04564 -10.98190 -10.86276 -10.78748 -10.57913 -10.25032 -10.13603 -9.98519 -9.90533 -9.63287 -8.99959 -8.77461 -8.49935 -8.37825 -7.73817 -6.16765 -4.19174 2.21929 2.71810 3.22637 3.30437 3.31808 3.37479 3.71644 3.91078 4.17796 4.29662 4.50023 4.62903 4.67582 4.72893 4.86041 4.95645 5.00411 5.07612 5.17730 5.19344 5.22536 5.32922 5.44437 5.51318 5.57739 5.58767 5.66775 5.67836 5.76632 5.78794 5.83081 5.90522 6.00823 6.01255 6.27179 6.35077 6.38133 6.51800 6.57909 6.73192 6.77230 6.97602 7.04612 7.07502 7.09220 7.47218 7.53159 7.70623 7.85748 8.10298 8.42583 8.83895 9.30016 9.44818 10.92587 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.009958 B = 0.004603 C = 0.003496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2811.056204 B = 6081.219252 C = 8006.424298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.166 3.834 3 N -0.301 5.301 4 N -0.316 5.316 5 C 0.370 3.630 6 N -0.469 5.469 7 C 0.045 3.955 8 C 0.228 3.772 9 H 0.038 0.962 10 C -0.168 4.168 11 C -0.509 4.509 12 H 0.066 0.934 13 C 0.065 3.935 14 N -0.888 5.888 15 Si 0.896 3.104 16 H -0.280 1.280 17 H -0.287 1.287 18 H -0.273 1.273 19 N -0.469 5.469 20 C 0.134 3.866 21 C 0.054 3.946 22 H 0.076 0.924 23 C -0.106 4.106 24 C -0.129 4.129 25 H 0.098 0.902 26 C 0.056 3.944 27 O -0.380 6.380 28 C 0.059 3.941 29 C 0.040 3.960 30 H 0.075 0.925 31 N -0.660 5.660 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.043 0.957 37 H 0.040 0.960 38 H 0.034 0.966 39 H 0.036 0.964 40 H 0.069 0.931 41 H 0.262 0.738 42 H 0.094 0.906 43 H 0.103 0.897 44 H 0.079 0.921 45 H 0.082 0.918 46 H 0.089 0.911 47 H 0.063 0.937 48 H 0.086 0.914 49 H 0.073 0.927 50 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.301 -5.900 -4.319 16.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.101 4.101 3 N -0.142 5.142 4 N -0.159 5.159 5 C 0.014 3.986 6 N -0.195 5.195 7 C -0.103 4.103 8 C 0.123 3.877 9 H 0.056 0.944 10 C -0.227 4.227 11 C -0.547 4.547 12 H 0.084 0.916 13 C -0.137 4.137 14 N -0.526 5.526 15 Si 0.724 3.276 16 H -0.206 1.206 17 H -0.213 1.213 18 H -0.197 1.197 19 N -0.162 5.162 20 C 0.010 3.990 21 C -0.056 4.056 22 H 0.094 0.906 23 C -0.144 4.144 24 C -0.148 4.148 25 H 0.116 0.884 26 C -0.021 4.021 27 O -0.298 6.298 28 C -0.019 4.019 29 C -0.071 4.071 30 H 0.093 0.907 31 N -0.290 5.290 32 H 0.092 0.908 33 H 0.108 0.892 34 H 0.104 0.896 35 H 0.107 0.893 36 H 0.062 0.938 37 H 0.059 0.941 38 H 0.053 0.947 39 H 0.055 0.945 40 H 0.088 0.912 41 H 0.072 0.928 42 H 0.112 0.888 43 H 0.121 0.879 44 H 0.097 0.903 45 H 0.101 0.899 46 H 0.107 0.893 47 H 0.082 0.918 48 H 0.105 0.895 49 H 0.091 0.909 50 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -15.679 -5.212 -4.481 17.119 hybrid contribution 1.880 -0.834 0.770 2.196 sum -13.799 -6.046 -3.711 15.516 Atomic orbital electron populations 1.20178 0.84305 1.04744 1.03045 1.24641 0.96324 0.82689 1.06484 1.73959 0.97053 1.24491 1.18678 1.74720 1.11264 1.08916 1.21017 1.22911 0.86265 0.88450 1.01002 1.59413 1.02296 1.49354 1.08432 1.22246 0.96980 1.00376 0.90715 1.19344 0.92889 0.93381 0.82091 0.94409 1.22379 1.00155 0.98195 1.01979 1.20999 1.10438 1.25463 0.97848 0.91586 1.24896 0.98007 0.95765 0.95079 1.69961 1.38014 1.45022 0.99621 0.86517 0.83715 0.79915 0.77494 1.20605 1.21299 1.19728 1.46333 1.06339 1.07948 1.55622 1.21722 1.01771 0.78506 0.97012 1.23035 0.95257 0.93446 0.93877 0.90556 1.22499 1.01354 0.94915 0.95660 1.23316 0.98234 0.95518 0.97767 0.88416 1.23513 0.87928 0.96574 0.94081 1.89101 1.61638 1.17747 1.61304 1.23446 0.93529 0.82941 1.01944 1.23586 0.96836 0.92584 0.94085 0.90722 1.63027 1.40027 1.05452 1.20458 0.90828 0.89204 0.89561 0.89286 0.93789 0.94122 0.94685 0.94510 0.91204 0.92811 0.88782 0.87904 0.90259 0.89914 0.89319 0.91842 0.89539 0.90860 0.84207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.68 10.05 36.01 0.36 -0.31 16 2 C 0.17 2.62 8.07 -154.02 -1.24 1.37 16 3 N -0.30 -5.95 12.18 32.99 0.40 -5.55 16 4 N -0.32 -6.86 9.79 30.31 0.30 -6.57 16 5 C 0.37 7.37 6.21 -318.87 -1.98 5.39 16 6 N -0.47 -9.76 4.77 -176.08 -0.84 -10.60 16 7 C 0.04 0.86 8.69 60.07 0.52 1.39 16 8 C 0.23 5.52 2.19 -68.86 -0.15 5.37 16 9 H 0.04 1.03 8.00 -51.93 -0.42 0.62 16 10 C -0.17 -4.16 8.26 37.16 0.31 -3.85 16 11 C -0.51 -13.04 7.90 -34.44 -0.27 -13.31 16 12 H 0.07 1.66 6.61 -52.49 -0.35 1.32 16 13 C 0.07 1.71 5.22 -17.82 -0.09 1.62 16 14 N -0.89 -24.55 12.03 55.43 0.67 -23.88 16 15 Si 0.90 20.37 29.54 -169.99 -5.02 15.35 16 16 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 17 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 18 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 19 N -0.47 -7.50 2.78 -114.08 -0.32 -7.82 16 20 C 0.13 1.66 5.67 -4.04 -0.02 1.63 16 21 C 0.05 0.67 3.44 -65.85 -0.23 0.44 16 22 H 0.08 1.28 8.06 -51.93 -0.42 0.87 16 23 C -0.11 -1.04 6.04 -25.00 -0.15 -1.19 16 24 C -0.13 -1.31 4.11 -88.00 -0.36 -1.67 16 25 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 26 C 0.06 0.52 7.17 37.86 0.27 0.79 16 27 O -0.38 -4.38 11.65 -35.23 -0.41 -4.79 16 28 C 0.06 0.59 7.33 37.94 0.28 0.87 16 29 C 0.04 0.43 4.43 -65.22 -0.29 0.14 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 31 N -0.66 -7.44 5.65 -94.91 -0.54 -7.97 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.09 0.85 6.83 -51.93 -0.35 0.49 16 34 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.09 1.74 6.27 -51.93 -0.33 1.41 16 36 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.04 0.83 6.42 -51.93 -0.33 0.49 16 38 H 0.03 0.84 6.45 -51.93 -0.34 0.50 16 39 H 0.04 0.91 6.01 -51.93 -0.31 0.60 16 40 H 0.07 1.88 6.75 -51.93 -0.35 1.53 16 41 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 42 H 0.09 0.93 7.65 -51.93 -0.40 0.53 16 43 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 44 H 0.08 0.66 7.09 -51.93 -0.37 0.29 16 45 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 47 H 0.06 0.53 7.18 -51.93 -0.37 0.16 16 48 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 49 H 0.07 0.71 7.96 -51.93 -0.41 0.30 16 50 H 0.34 4.47 8.92 -39.29 -0.35 4.12 16 LS Contribution 386.25 15.07 5.82 5.82 Total: -1.00 -30.24 386.25 -11.03 -41.26 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -8.03 Total: 6.08 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: -3.05 Total: -1.33 kcal Atomic # 7 Polarization: -62.06 SS G_CDS: -0.33 Total: -62.39 kcal Atomic # 8 Polarization: -4.38 SS G_CDS: -0.41 Total: -4.79 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -30.24 -11.03 -41.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001579900330.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.213 kcal (2) G-P(sol) polarization free energy of solvation -30.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds