Wall clock time and date at job start Tue Mar 31 2020 19:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30293 * 126.34586 * 2 1 4 4 N 1.28532 * 110.05380 * 180.02562 * 3 2 1 5 5 C 1.31219 * 109.85591 * 359.97438 * 4 3 2 6 6 N 1.38580 * 126.47320 * 179.97438 * 5 4 3 7 7 C 1.46907 * 111.00048 * 306.07021 * 6 5 4 8 8 C 1.46904 * 110.99830 * 70.02307 * 6 5 4 9 9 H 1.08996 * 109.47157 * 55.00010 * 8 6 5 10 10 C 1.53001 * 109.47233 * 295.00116 * 8 6 5 11 11 C 1.50702 * 109.47045 * 175.00309 * 8 6 5 12 12 H 1.08001 * 120.00327 * 4.77671 * 11 8 6 13 13 C 1.37882 * 119.99655 * 184.78075 * 11 8 6 14 14 N 1.31507 * 120.00154 * 7.81962 * 13 11 8 15 15 Si 1.86800 * 119.99658 * 187.81481 * 13 11 8 16 16 H 1.48494 * 109.46906 * 94.96262 * 15 13 11 17 17 H 1.48506 * 109.46934 * 214.96006 * 15 13 11 18 18 H 1.48497 * 109.47364 * 334.95761 * 15 13 11 19 19 N 1.36453 * 107.05656 * 0.22779 * 5 4 3 20 20 C 1.46501 * 127.13874 * 179.77050 * 19 5 4 21 21 C 1.53004 * 109.46914 * 85.32492 * 20 19 5 22 22 H 1.09004 * 110.59586 * 303.44218 * 21 20 19 23 23 C 1.54898 * 110.67023 * 180.24945 * 21 20 19 24 24 C 1.54397 * 103.01366 * 203.72754 * 23 21 20 25 25 H 1.09002 * 113.03359 * 259.24775 * 24 23 21 26 26 C 1.54338 * 108.94069 * 133.30343 * 24 23 21 27 27 O 1.44416 * 104.75563 * 223.58232 * 26 24 23 28 28 C 1.44360 * 105.26317 * 41.01757 * 27 26 24 29 29 C 1.54487 * 105.02255 * 319.63427 * 28 27 26 30 30 H 1.09004 * 112.08479 * 260.85714 * 29 28 27 31 31 N 1.47860 * 108.62770 * 136.54313 * 29 28 27 32 32 H 1.09000 * 109.47386 * 89.97112 * 1 2 3 33 33 H 1.08992 * 109.47226 * 209.97358 * 1 2 3 34 34 H 1.09006 * 109.46941 * 329.97704 * 1 2 3 35 35 H 1.08998 * 109.46482 * 177.64105 * 7 6 5 36 36 H 1.08998 * 109.46731 * 297.64365 * 7 6 5 37 37 H 1.08993 * 109.46778 * 57.64514 * 7 6 5 38 38 H 1.09001 * 109.46872 * 301.37376 * 10 8 6 39 39 H 1.09003 * 109.47198 * 61.36221 * 10 8 6 40 40 H 1.08997 * 109.47762 * 181.37011 * 10 8 6 41 41 H 0.97002 * 120.00320 * 179.97438 * 14 13 11 42 42 H 1.09002 * 109.47119 * 205.32681 * 20 19 5 43 43 H 1.09005 * 109.47244 * 325.32734 * 20 19 5 44 44 H 1.09006 * 110.70457 * 322.10254 * 23 21 20 45 45 H 1.08996 * 110.71360 * 85.33944 * 23 21 20 46 46 H 1.09003 * 110.37931 * 104.75940 * 26 24 23 47 47 H 1.09002 * 110.47284 * 342.45447 * 26 24 23 48 48 H 1.09003 * 110.33116 * 200.73996 * 28 27 26 49 49 H 1.09004 * 110.32756 * 78.51753 * 28 27 26 50 50 H 1.00901 * 111.00137 * 102.84445 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2792 1.0494 0.0000 4 7 3.5130 0.6889 -0.0005 5 6 3.5945 -0.6208 -0.0004 6 7 4.7579 -1.3737 -0.0013 7 6 5.6376 -0.9820 -1.1108 8 6 5.4557 -1.2661 1.2870 9 1 4.7761 -1.5440 2.0926 10 6 5.9279 0.1746 1.4925 11 6 6.6459 -2.1905 1.2924 12 1 6.9076 -2.7392 0.3997 13 6 7.4007 -2.3357 2.4371 14 7 6.9973 -1.7915 3.5642 15 14 8.9963 -3.3057 2.3868 16 1 10.1347 -2.3754 2.1785 17 1 9.1766 -4.0289 3.6712 18 1 8.9459 -4.2841 1.2708 19 7 2.3174 -1.1013 -0.0049 20 6 1.9009 -2.5059 -0.0111 21 6 1.8657 -3.0337 1.4246 22 1 2.8355 -2.9038 1.9048 23 6 1.4339 -4.5211 1.4498 24 6 0.8686 -4.6949 2.8761 25 1 1.5701 -5.1768 3.5571 26 6 -0.4817 -5.4377 2.7927 27 8 -1.3501 -4.7252 3.7004 28 6 -1.0551 -3.3278 3.4905 29 6 0.4801 -3.2623 3.3305 30 1 0.9756 -2.9584 4.2526 31 7 0.7995 -2.3575 2.2054 32 1 -0.3634 0.0005 -1.0276 33 1 -0.3633 -0.8902 0.5134 34 1 -0.3633 0.8898 0.5142 35 1 6.5611 -1.5592 -1.0633 36 1 5.1357 -1.1768 -2.0585 37 1 5.8687 0.0803 -1.0335 38 1 6.5883 0.4607 0.6738 39 1 5.0651 0.8404 1.5127 40 1 6.4668 0.2492 2.4370 41 1 7.5281 -1.8940 4.3696 42 1 0.9079 -2.5884 -0.4531 43 1 2.6091 -3.0923 -0.5965 44 1 0.6622 -4.7111 0.7037 45 1 2.2921 -5.1744 1.2931 46 1 -0.3656 -6.4733 3.1125 47 1 -0.8774 -5.3967 1.7779 48 1 -1.3716 -2.7403 4.3523 49 1 -1.5458 -2.9690 2.5857 50 1 1.1121 -1.4589 2.5415 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001579900330.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:00 Heat of formation + Delta-G solvation = 40.031665 kcal Electronic energy + Delta-G solvation = -31293.951495 eV Core-core repulsion = 27357.359510 eV Total energy + Delta-G solvation = -3936.591985 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.89144 -41.25870 -38.99405 -37.99591 -35.59366 -34.87082 -32.72916 -32.30993 -31.41089 -30.69128 -28.54180 -28.19996 -27.22794 -27.00750 -26.67512 -23.56133 -23.24966 -22.14300 -21.65974 -21.12577 -20.58036 -18.55148 -18.36574 -17.76871 -17.51676 -17.05729 -16.59412 -16.42138 -16.36907 -16.22671 -15.49152 -15.43946 -14.97305 -14.83905 -14.40685 -14.21288 -14.07982 -13.60257 -13.57013 -13.39443 -13.15721 -13.02848 -12.98869 -12.91327 -12.85614 -12.74221 -12.63416 -12.60908 -12.31883 -12.14623 -12.05133 -12.00899 -12.00128 -11.66459 -11.43914 -11.02304 -10.83015 -10.73754 -10.54972 -9.89486 -9.76891 -9.43228 -8.20002 -6.28992 0.84567 1.41382 1.42653 1.45854 1.54044 1.90932 2.39817 2.82163 3.02993 3.09429 3.14959 3.32524 3.60097 3.65234 3.83237 3.89024 3.98735 4.10899 4.20035 4.23746 4.29345 4.31621 4.35211 4.48331 4.59827 4.60864 4.67773 4.74044 4.79751 4.83142 4.85042 4.86863 4.91326 4.94645 4.98722 5.01261 5.06758 5.07982 5.09182 5.16727 5.18356 5.40146 5.52018 5.54023 5.65270 5.88350 5.88893 6.01624 6.04521 6.15029 6.66815 6.80630 7.39149 7.85666 8.89707 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.009958 B = 0.004603 C = 0.003496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2811.056204 B = 6081.219252 C = 8006.424298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.190 3.810 3 N -0.344 5.344 4 N -0.351 5.351 5 C 0.347 3.653 6 N -0.462 5.462 7 C 0.049 3.951 8 C 0.243 3.757 9 H 0.000 1.000 10 C -0.150 4.150 11 C -0.515 4.515 12 H 0.072 0.928 13 C 0.017 3.983 14 N -0.922 5.922 15 Si 0.961 3.039 16 H -0.279 1.279 17 H -0.287 1.287 18 H -0.259 1.259 19 N -0.462 5.462 20 C 0.132 3.868 21 C 0.058 3.942 22 H 0.022 0.978 23 C -0.095 4.095 24 C -0.131 4.131 25 H 0.086 0.914 26 C 0.059 3.941 27 O -0.398 6.398 28 C 0.066 3.934 29 C 0.033 3.967 30 H 0.056 0.944 31 N -0.641 5.641 32 H 0.101 0.899 33 H 0.107 0.893 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.069 0.931 37 H 0.025 0.975 38 H 0.037 0.963 39 H 0.030 0.970 40 H 0.042 0.958 41 H 0.262 0.738 42 H 0.134 0.866 43 H 0.102 0.898 44 H 0.109 0.891 45 H 0.080 0.920 46 H 0.101 0.899 47 H 0.082 0.918 48 H 0.091 0.909 49 H 0.085 0.915 50 H 0.330 0.670 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.268 -7.675 -6.091 19.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.078 4.078 3 N -0.184 5.184 4 N -0.194 5.194 5 C -0.010 4.010 6 N -0.188 5.188 7 C -0.099 4.099 8 C 0.137 3.863 9 H 0.018 0.982 10 C -0.209 4.209 11 C -0.553 4.553 12 H 0.090 0.910 13 C -0.182 4.182 14 N -0.561 5.561 15 Si 0.786 3.214 16 H -0.205 1.205 17 H -0.213 1.213 18 H -0.183 1.183 19 N -0.155 5.155 20 C 0.009 3.991 21 C -0.053 4.053 22 H 0.040 0.960 23 C -0.133 4.133 24 C -0.150 4.150 25 H 0.105 0.895 26 C -0.017 4.017 27 O -0.317 6.317 28 C -0.011 4.011 29 C -0.077 4.077 30 H 0.074 0.926 31 N -0.270 5.270 32 H 0.119 0.881 33 H 0.126 0.874 34 H 0.113 0.887 35 H 0.105 0.895 36 H 0.088 0.912 37 H 0.044 0.956 38 H 0.056 0.944 39 H 0.048 0.952 40 H 0.061 0.939 41 H 0.070 0.930 42 H 0.151 0.849 43 H 0.121 0.879 44 H 0.127 0.873 45 H 0.099 0.901 46 H 0.119 0.881 47 H 0.100 0.900 48 H 0.109 0.891 49 H 0.103 0.897 50 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -17.669 -7.007 -6.278 20.018 hybrid contribution 2.380 -0.253 1.341 2.744 sum -15.288 -7.260 -4.937 17.630 Atomic orbital electron populations 1.20450 0.80228 1.06041 1.05149 1.25625 0.98077 0.81558 1.02529 1.73880 0.96830 1.26325 1.21390 1.74576 1.12835 1.10088 1.21876 1.22815 0.87101 0.88374 1.02741 1.59281 1.02652 1.49732 1.07113 1.22243 0.97039 0.99284 0.91306 1.18938 0.92005 0.92436 0.82952 0.98248 1.22183 0.99453 0.98828 1.00448 1.21262 1.10701 1.25404 0.97981 0.90993 1.25701 1.01058 0.96788 0.94672 1.70101 1.39268 1.46526 1.00251 0.85496 0.79540 0.78685 0.77679 1.20464 1.21344 1.18325 1.46494 1.04939 1.09475 1.54567 1.22034 1.03667 0.76372 0.96982 1.22899 0.93102 0.95632 0.93640 0.95981 1.22494 1.02073 0.92578 0.96189 1.23316 0.98932 0.95048 0.97733 0.89523 1.23622 0.86620 0.96736 0.94764 1.89089 1.62084 1.18370 1.62165 1.23417 0.92263 0.82675 1.02748 1.23637 0.97834 0.93021 0.93240 0.92597 1.63106 1.38721 1.04763 1.20383 0.88102 0.87407 0.88699 0.89523 0.91221 0.95598 0.94385 0.95151 0.93909 0.92954 0.84855 0.87949 0.87297 0.90105 0.88123 0.89973 0.89053 0.89684 0.85619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.06 10.05 71.24 0.72 -0.35 16 2 C 0.19 5.72 8.07 137.64 1.11 6.83 16 3 N -0.34 -13.61 12.18 -49.54 -0.60 -14.22 16 4 N -0.35 -15.58 9.79 -58.00 -0.57 -16.15 16 5 C 0.35 14.05 6.21 260.11 1.62 15.67 16 6 N -0.46 -19.64 4.77 -710.99 -3.39 -23.03 16 7 C 0.05 1.89 8.69 127.69 1.11 3.00 16 8 C 0.24 12.27 2.19 44.17 0.10 12.37 16 9 H 0.00 -0.02 8.00 -2.39 -0.02 -0.04 16 10 C -0.15 -7.79 8.26 71.98 0.59 -7.19 16 11 C -0.52 -26.90 7.90 25.60 0.20 -26.70 16 12 H 0.07 3.61 6.61 -2.91 -0.02 3.59 16 13 C 0.02 0.92 5.22 84.66 0.44 1.36 16 14 N -0.92 -52.80 12.03 21.45 0.26 -52.54 16 15 Si 0.96 42.03 29.54 68.60 2.03 44.06 16 16 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 17 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 18 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 19 N -0.46 -14.39 2.78 -514.83 -1.43 -15.82 16 20 C 0.13 2.99 5.67 86.38 0.49 3.48 16 21 C 0.06 1.41 3.44 45.27 0.16 1.56 16 22 H 0.02 0.79 8.06 -2.38 -0.02 0.77 16 23 C -0.10 -1.69 6.04 31.72 0.19 -1.50 16 24 C -0.13 -2.50 4.11 -9.10 -0.04 -2.54 16 25 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 26 C 0.06 0.93 7.17 72.44 0.52 1.45 16 27 O -0.40 -8.31 11.65 -148.98 -1.74 -10.05 16 28 C 0.07 1.20 7.33 72.49 0.53 1.73 16 29 C 0.03 0.70 4.43 46.00 0.20 0.91 16 30 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 31 N -0.64 -13.82 5.65 -454.18 -2.57 -16.38 16 32 H 0.10 1.36 8.14 -2.39 -0.02 1.35 16 33 H 0.11 1.57 6.83 -2.39 -0.02 1.55 16 34 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 35 H 0.09 3.36 6.27 -2.39 -0.01 3.35 16 36 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 37 H 0.03 1.06 6.42 -2.39 -0.02 1.05 16 38 H 0.04 1.89 6.45 -2.39 -0.02 1.87 16 39 H 0.03 1.58 6.01 -2.39 -0.01 1.56 16 40 H 0.04 2.41 6.75 -2.39 -0.02 2.40 16 41 H 0.26 14.31 8.31 -92.71 -0.77 13.53 16 42 H 0.13 2.03 7.65 -2.39 -0.02 2.01 16 43 H 0.10 2.39 8.14 -2.38 -0.02 2.38 16 44 H 0.11 1.33 7.09 -2.38 -0.02 1.31 16 45 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 46 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 47 H 0.08 1.02 7.18 -2.39 -0.02 1.01 16 48 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 49 H 0.09 1.36 7.96 -2.38 -0.02 1.34 16 50 H 0.33 8.65 8.92 -89.69 -0.80 7.85 16 Total: -1.00 -69.04 386.25 0.08 -68.96 By element: Atomic # 1 Polarization: 24.93 SS G_CDS: 0.15 Total: 25.09 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: 7.94 Total: 10.09 kcal Atomic # 7 Polarization: -129.84 SS G_CDS: -8.31 Total: -138.14 kcal Atomic # 8 Polarization: -8.31 SS G_CDS: -1.74 Total: -10.05 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Total: -69.04 0.08 -68.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001579900330.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.993 kcal (2) G-P(sol) polarization free energy of solvation -69.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds