Wall clock time and date at job start Tue Mar 31 2020 20:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 109.47215 * 2 1 4 4 C 1.52993 * 109.47382 * 239.99454 * 2 1 3 5 5 N 1.46906 * 109.46945 * 119.99713 * 2 1 3 6 6 C 1.48529 * 110.99977 * 172.62214 * 5 2 1 7 7 C 1.54941 * 103.22694 * 200.27911 * 6 5 2 8 8 C 1.54590 * 102.91875 * 37.41319 * 7 6 5 9 9 H 1.09009 * 110.39506 * 97.00339 * 8 7 6 10 10 N 1.46501 * 110.30587 * 219.12553 * 8 7 6 11 11 C 1.34778 * 120.00177 * 270.71138 * 10 8 7 12 12 O 1.21594 * 119.99701 * 0.02562 * 11 10 8 13 13 N 1.34775 * 119.99859 * 179.97438 * 11 10 8 14 14 C 1.40205 * 119.99697 * 180.02562 * 13 11 10 15 15 C 1.40395 * 125.97098 * 0.02562 * 14 13 11 16 16 C 1.35249 * 107.86600 * 179.71419 * 15 14 13 17 17 N 1.34964 * 107.85790 * 0.42472 * 16 15 14 18 18 C 1.46499 * 125.97745 * 179.83854 * 17 16 15 19 19 C 1.50705 * 109.47147 * 124.71488 * 18 17 16 20 20 H 1.08005 * 119.99866 * 359.97438 * 19 18 17 21 21 C 1.37876 * 119.99892 * 179.97438 * 19 18 17 22 22 N 1.31512 * 120.00199 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 119.99592 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46555 * 179.97438 * 23 21 19 25 25 H 1.48494 * 109.47399 * 300.00182 * 23 21 19 26 26 H 1.48494 * 109.47052 * 60.00364 * 23 21 19 27 27 N 1.31210 * 125.97228 * 179.97438 * 14 13 11 28 28 C 1.47900 * 111.00098 * 55.22244 * 5 2 1 29 29 H 1.09003 * 109.47253 * 300.00481 * 1 2 3 30 30 H 1.08996 * 109.47300 * 60.00248 * 1 2 3 31 31 H 1.09000 * 109.47136 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47410 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.47252 * 299.99587 * 3 2 1 34 34 H 1.09003 * 109.47403 * 59.99611 * 3 2 1 35 35 H 1.08999 * 109.47399 * 292.83296 * 4 2 1 36 36 H 1.09009 * 109.47053 * 52.83504 * 4 2 1 37 37 H 1.09005 * 109.47615 * 172.82802 * 4 2 1 38 38 H 1.09008 * 110.66515 * 318.71058 * 6 5 2 39 39 H 1.08998 * 110.67036 * 81.67738 * 6 5 2 40 40 H 1.08994 * 110.72253 * 279.05123 * 7 6 5 41 41 H 1.09001 * 110.72513 * 155.76835 * 7 6 5 42 42 H 0.97000 * 120.00319 * 90.72239 * 10 8 7 43 43 H 0.96992 * 120.00589 * 0.02562 * 13 11 10 44 44 H 1.08000 * 126.07287 * 0.02562 * 15 14 13 45 45 H 1.08000 * 126.07373 * 180.26484 * 16 15 14 46 46 H 1.08996 * 109.46891 * 4.71656 * 18 17 16 47 47 H 1.08995 * 109.46867 * 244.71024 * 18 17 16 48 48 H 0.97003 * 119.99761 * 359.97438 * 22 21 19 49 49 H 1.09004 * 109.91229 * 26.49351 * 28 5 2 50 50 H 1.08995 * 109.91759 * 265.19678 * 28 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 2.0196 -0.6925 1.1995 6 6 3.4935 -0.8684 1.1482 7 6 3.7482 -2.0206 2.1523 8 6 2.5349 -2.9513 1.9254 9 1 2.7996 -3.7620 1.2465 10 7 2.0634 -3.4924 3.2026 11 6 2.5774 -4.6442 3.6774 12 8 3.4329 -5.2341 3.0460 13 7 2.1440 -5.1417 4.8526 14 6 2.6792 -6.3397 5.3468 15 6 3.6667 -7.1202 4.7249 16 6 3.9131 -8.1872 5.5187 17 7 3.1079 -8.0949 6.5979 18 6 3.0469 -9.0466 7.7100 19 6 3.2785 -8.3174 9.0084 20 1 3.4540 -7.2517 9.0054 21 6 3.2663 -9.0107 10.2001 22 7 3.0531 -10.3084 10.2038 23 14 3.5541 -8.1069 11.8095 24 1 3.4909 -9.0713 12.9368 25 1 4.8916 -7.4624 11.7830 26 1 2.5077 -7.0684 11.9879 27 7 2.3454 -6.9267 6.4718 28 6 1.4537 -2.0558 1.2927 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.7852 -1.7793 -1.1873 36 1 1.5758 -0.2869 -2.1346 37 1 3.1224 -0.6116 -1.3156 38 1 3.8121 -1.1544 0.1457 39 1 4.0010 0.0421 1.4667 40 1 3.7603 -1.6450 3.1754 41 1 4.6793 -2.5370 1.9188 42 1 1.3811 -3.0218 3.7065 43 1 1.4619 -4.6710 5.3565 44 1 4.1481 -6.9042 3.7826 45 1 4.6256 -8.9747 5.3224 46 1 3.8156 -9.8082 7.5790 47 1 2.0655 -9.5202 7.7294 48 1 2.9041 -10.7778 9.3680 49 1 1.2035 -2.4227 0.2972 50 1 0.5641 -2.0463 1.9223 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647452843.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:57 Heat of formation + Delta-G solvation = 63.641088 kcal Electronic energy + Delta-G solvation = -28624.312430 eV Core-core repulsion = 24688.744226 eV Total energy + Delta-G solvation = -3935.568204 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.90488 -40.38575 -39.34694 -36.21693 -34.71903 -33.77012 -33.25049 -30.79868 -29.83515 -29.35222 -28.68825 -27.84304 -27.15127 -26.11899 -23.28316 -22.63152 -22.08937 -20.89965 -20.52497 -19.86562 -19.17989 -18.14096 -17.16149 -16.96176 -16.57705 -16.18236 -15.46616 -15.16820 -14.76068 -14.68546 -14.55206 -14.39607 -14.11092 -13.78878 -13.67577 -13.45883 -13.13912 -12.70076 -12.53106 -12.47853 -12.33512 -12.32686 -12.14235 -12.08830 -11.80243 -11.73471 -11.65671 -11.36612 -11.14857 -11.12186 -10.95224 -10.80192 -10.42707 -10.15211 -10.11185 -9.71173 -9.28117 -8.96538 -8.75087 -8.56553 -8.15693 -7.45145 -6.56435 -4.30284 2.34541 2.61102 3.06526 3.38829 3.40578 3.45857 3.55398 3.60642 3.79366 4.14858 4.23296 4.31115 4.42816 4.45470 4.57572 4.68210 4.83884 4.89749 4.99310 5.09052 5.17211 5.18657 5.20050 5.30966 5.34879 5.40392 5.42363 5.47418 5.47941 5.56648 5.65989 5.70177 5.74671 5.80719 5.86236 5.93018 6.18088 6.31682 6.44322 6.48430 6.52013 6.66500 6.69098 6.79273 7.00256 7.44671 7.65333 7.87113 7.92919 8.36568 8.57567 8.58337 8.65733 9.37838 10.81004 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.026256 B = 0.001849 C = 0.001798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.185998 B =15141.578848 C =15568.532050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.091 3.909 3 C -0.135 4.135 4 C -0.185 4.185 5 N -0.502 5.502 6 C 0.029 3.971 7 C -0.135 4.135 8 C 0.158 3.842 9 H 0.097 0.903 10 N -0.735 5.735 11 C 0.714 3.286 12 O -0.568 6.568 13 N -0.644 5.644 14 C 0.278 3.722 15 C -0.284 4.284 16 C 0.050 3.950 17 N -0.319 5.319 18 C 0.250 3.750 19 C -0.607 4.607 20 H 0.063 0.937 21 C 0.022 3.978 22 N -0.905 5.905 23 Si 1.077 2.923 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.285 1.285 27 N -0.305 5.305 28 C 0.025 3.975 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.055 0.945 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.398 0.602 43 H 0.407 0.593 44 H 0.162 0.838 45 H 0.167 0.833 46 H 0.046 0.954 47 H 0.034 0.966 48 H 0.267 0.733 49 H 0.062 0.938 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.236 21.270 -22.919 31.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.001 3.999 3 C -0.193 4.193 4 C -0.244 4.244 5 N -0.227 5.227 6 C -0.099 4.099 7 C -0.175 4.175 8 C 0.052 3.948 9 H 0.115 0.885 10 N -0.391 5.391 11 C 0.413 3.587 12 O -0.444 6.444 13 N -0.293 5.293 14 C 0.024 3.976 15 C -0.315 4.315 16 C -0.100 4.100 17 N -0.101 5.101 18 C 0.131 3.869 19 C -0.645 4.645 20 H 0.081 0.919 21 C -0.182 4.182 22 N -0.541 5.541 23 Si 0.904 3.096 24 H -0.205 1.205 25 H -0.212 1.212 26 H -0.212 1.212 27 N -0.136 5.136 28 C -0.103 4.103 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.102 0.898 40 H 0.099 0.901 41 H 0.097 0.903 42 H 0.233 0.767 43 H 0.242 0.758 44 H 0.179 0.821 45 H 0.184 0.816 46 H 0.064 0.936 47 H 0.052 0.948 48 H 0.077 0.923 49 H 0.080 0.920 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.262 20.796 -20.299 29.243 hybrid contribution -0.052 0.118 -2.574 2.577 sum -3.314 20.914 -22.873 31.169 Atomic orbital electron populations 1.21907 0.93528 1.02162 1.02303 1.21230 0.95585 0.94841 0.88222 1.21803 1.01027 0.94370 1.02085 1.22543 1.01890 1.01175 0.98751 1.65055 1.05533 1.15547 1.36564 1.23347 0.88775 0.99050 0.98745 1.22973 0.98498 0.95505 1.00496 1.21626 0.93147 0.95640 0.84432 0.88502 1.45119 1.45372 1.24472 1.24146 1.15637 0.81616 0.80855 0.80554 1.90859 1.33993 1.60500 1.59042 1.41391 1.43307 1.22949 1.21692 1.18786 0.96847 0.88276 0.93715 1.21519 1.06657 0.97818 1.05504 1.22554 0.97749 1.00642 0.89058 1.48752 1.27383 1.16903 1.17045 1.19744 0.97976 0.86122 0.83020 1.22109 1.54393 0.97026 0.90996 0.91857 1.25923 0.93542 0.96088 1.02680 1.70851 1.44415 1.08179 1.30612 0.83418 0.76692 0.74906 0.74603 1.20545 1.21242 1.21158 1.77344 1.20574 0.98922 1.16787 1.23194 0.97959 0.88522 1.00658 0.91693 0.92186 0.92513 0.92629 0.92312 0.91752 0.92126 0.91890 0.91908 0.92650 0.89819 0.90140 0.90272 0.76679 0.75824 0.82061 0.81582 0.93643 0.94823 0.92289 0.91971 0.89612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.77 8.27 37.15 0.31 -0.46 16 2 C 0.09 0.54 0.69 -131.61 -0.09 0.45 16 3 C -0.14 -0.74 8.48 37.16 0.32 -0.42 16 4 C -0.19 -1.01 7.59 37.15 0.28 -0.73 16 5 N -0.50 -3.49 5.09 -214.86 -1.09 -4.58 16 6 C 0.03 0.20 5.49 -1.90 -0.01 0.19 16 7 C -0.14 -1.17 6.78 -24.87 -0.17 -1.34 16 8 C 0.16 1.41 3.34 -66.58 -0.22 1.19 16 9 H 0.10 1.01 7.56 -51.92 -0.39 0.62 16 10 N -0.73 -7.31 5.06 -57.35 -0.29 -7.60 16 11 C 0.71 10.40 8.53 -86.92 -0.74 9.66 16 12 O -0.57 -10.12 13.12 5.28 0.07 -10.05 16 13 N -0.64 -10.07 5.46 -15.50 -0.08 -10.16 16 14 C 0.28 5.68 8.11 -154.35 -1.25 4.43 16 15 C -0.28 -5.74 9.61 -39.83 -0.38 -6.13 16 16 C 0.05 1.01 11.44 -17.24 -0.20 0.81 16 17 N -0.32 -7.57 3.67 -62.56 -0.23 -7.80 16 18 C 0.25 6.39 5.57 -5.19 -0.03 6.36 16 19 C -0.61 -17.23 9.24 -34.44 -0.32 -17.54 16 20 H 0.06 1.88 7.81 -52.48 -0.41 1.47 16 21 C 0.02 0.63 5.46 -17.82 -0.10 0.53 16 22 N -0.91 -26.50 13.65 55.43 0.76 -25.74 16 23 Si 1.08 25.09 29.90 -169.99 -5.08 20.00 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 26 H -0.29 -6.44 7.11 56.52 0.40 -6.03 16 27 N -0.31 -7.17 12.42 31.44 0.39 -6.78 16 28 C 0.03 0.17 4.87 -2.76 -0.01 0.16 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.31 6.77 -51.93 -0.35 -0.04 16 32 H 0.05 0.30 7.15 -51.93 -0.37 -0.07 16 33 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.36 6.05 -51.93 -0.31 0.04 16 36 H 0.06 0.31 8.14 -51.92 -0.42 -0.12 16 37 H 0.06 0.35 6.37 -51.93 -0.33 0.02 16 38 H 0.06 0.36 5.55 -51.92 -0.29 0.07 16 39 H 0.08 0.56 7.71 -51.93 -0.40 0.16 16 40 H 0.08 0.77 8.06 -51.93 -0.42 0.35 16 41 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.40 2.99 8.37 -40.82 -0.34 2.65 16 43 H 0.41 5.18 8.84 -40.82 -0.36 4.82 16 44 H 0.16 3.19 5.91 -52.49 -0.31 2.88 16 45 H 0.17 2.77 8.06 -52.49 -0.42 2.34 16 46 H 0.05 1.12 7.94 -51.93 -0.41 0.71 16 47 H 0.03 0.90 8.01 -51.93 -0.42 0.48 16 48 H 0.27 7.64 7.22 -40.82 -0.29 7.35 16 49 H 0.06 0.41 5.29 -51.93 -0.27 0.14 16 50 H 0.09 0.57 7.65 -51.93 -0.40 0.17 16 LS Contribution 392.29 15.07 5.91 5.91 Total: -1.00 -33.64 392.29 -10.11 -43.75 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -7.84 Total: 5.90 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: -2.62 Total: -2.85 kcal Atomic # 7 Polarization: -62.11 SS G_CDS: -0.55 Total: -62.66 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.07 Total: -10.05 kcal Atomic # 14 Polarization: 25.09 SS G_CDS: -5.08 Total: 20.00 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.64 -10.11 -43.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647452843.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.390 kcal (2) G-P(sol) polarization free energy of solvation -33.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds