Wall clock time and date at job start Tue Mar 31 2020 20:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34784 * 119.99668 * 2 1 4 4 O 1.21282 * 119.99963 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99442 * 180.02562 * 3 2 1 6 6 C 1.53118 * 109.51971 * 179.97438 * 5 3 2 7 7 C 1.53038 * 109.27784 * 177.56146 * 6 5 3 8 8 N 1.46848 * 109.51978 * 300.81912 * 7 6 5 9 9 C 1.38586 * 110.99738 * 185.83814 * 8 7 6 10 10 N 1.31212 * 126.47599 * 304.69203 * 9 8 7 11 11 N 1.28522 * 109.86201 * 179.69681 * 10 9 8 12 12 C 1.30295 * 110.05306 * 0.44075 * 11 10 9 13 13 C 1.50708 * 126.34846 * 179.82073 * 12 11 10 14 14 C 1.53001 * 109.46598 * 112.64835 * 13 12 11 15 15 C 1.53001 * 109.46972 * 352.65172 * 13 12 11 16 16 C 1.50693 * 109.47053 * 232.64515 * 13 12 11 17 17 H 1.07997 * 119.99916 * 238.47474 * 16 13 12 18 18 C 1.37879 * 120.00109 * 58.76414 * 16 13 12 19 19 N 1.31512 * 120.00243 * 190.20772 * 18 16 13 20 20 Si 1.86801 * 119.99868 * 10.19839 * 18 16 13 21 21 H 1.48490 * 109.47198 * 84.56839 * 20 18 16 22 22 H 1.48504 * 109.46934 * 204.56844 * 20 18 16 23 23 H 1.48504 * 109.47344 * 324.56594 * 20 18 16 24 24 N 1.36454 * 126.47023 * 124.64491 * 9 8 7 25 25 C 1.46501 * 127.13712 * 0.05923 * 24 9 8 26 26 C 1.46847 * 111.19804 * 61.74666 * 8 7 6 27 27 C 1.53033 * 109.52240 * 298.25326 * 26 8 7 28 28 H 1.09005 * 109.46613 * 300.00248 * 1 2 3 29 29 H 1.08997 * 109.47223 * 59.99965 * 1 2 3 30 30 H 1.08993 * 109.46710 * 179.97438 * 1 2 3 31 31 H 0.96996 * 120.00316 * 180.02562 * 2 1 3 32 32 H 1.09003 * 109.57619 * 59.84267 * 5 3 2 33 33 H 1.08998 * 109.50520 * 57.61967 * 6 5 3 34 34 H 1.09001 * 109.50454 * 297.50244 * 6 5 3 35 35 H 1.09005 * 109.45791 * 180.80767 * 7 6 5 36 36 H 1.08994 * 109.46448 * 60.83766 * 7 6 5 37 37 H 1.08999 * 109.46985 * 185.13967 * 14 13 12 38 38 H 1.09003 * 109.47299 * 305.14242 * 14 13 12 39 39 H 1.08996 * 109.47498 * 65.14237 * 14 13 12 40 40 H 1.08998 * 109.46848 * 293.96191 * 15 13 12 41 41 H 1.08997 * 109.47323 * 53.96078 * 15 13 12 42 42 H 1.08997 * 109.46802 * 173.96739 * 15 13 12 43 43 H 0.96998 * 120.00288 * 179.97438 * 19 18 16 44 44 H 1.09008 * 109.47023 * 274.58173 * 25 24 9 45 45 H 1.09003 * 109.47307 * 34.57862 * 25 24 9 46 46 H 1.09000 * 109.47226 * 154.58214 * 25 24 9 47 47 H 1.08997 * 109.46121 * 58.27016 * 26 8 7 48 48 H 1.09001 * 109.45915 * 178.23905 * 26 8 7 49 49 H 1.09007 * 109.50702 * 299.24244 * 27 26 8 50 50 H 1.09001 * 109.50867 * 179.12183 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 1.5324 2.2176 -0.0005 5 6 3.6459 1.1672 -0.0006 6 6 4.1576 2.6104 -0.0011 7 6 5.6868 2.6043 0.0598 8 7 6.1266 1.9105 1.2770 9 6 7.5010 2.0001 1.4304 10 7 8.4089 1.6362 0.5558 11 7 9.5835 1.8659 1.0243 12 6 9.4955 2.3770 2.2196 13 6 10.6461 2.7811 3.1052 14 6 10.6512 4.3019 3.2724 15 6 11.9626 2.3337 2.4667 16 6 10.4948 2.1279 4.4547 17 1 10.4355 2.7359 5.3453 18 6 10.4379 0.7538 4.5531 19 7 10.1067 0.1893 5.6938 20 14 10.8312 -0.3061 3.0660 21 1 12.2997 -0.5065 2.9754 22 1 10.1595 -1.6232 3.2053 23 1 10.3468 0.3688 1.8350 24 7 8.1658 2.4841 2.5194 25 6 7.5768 3.0092 3.7538 26 6 5.6873 0.5093 1.2777 27 6 4.1582 0.4528 1.2531 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0276 -0.0005 31 1 1.9501 -0.8400 -0.0004 32 1 4.0108 0.6515 -0.8889 33 1 3.7610 3.1375 0.8666 34 1 3.8317 3.1118 -0.9124 35 1 6.0537 3.6307 0.0740 36 1 6.0830 2.0892 -0.8152 37 1 11.5342 4.6024 3.8364 38 1 10.6686 4.7753 2.2907 39 1 9.7546 4.6115 3.8091 40 1 12.0045 1.2448 2.4455 41 1 12.0224 2.7195 1.4490 42 1 12.7987 2.7182 3.0508 43 1 10.0663 -0.7774 5.7629 44 1 7.3390 4.0649 3.6225 45 1 6.6655 2.4575 3.9849 46 1 8.2876 2.8959 4.5723 47 1 6.0835 0.0040 0.3969 48 1 6.0546 0.0140 2.1765 49 1 3.7614 0.9460 2.1406 50 1 3.8325 -0.5873 1.2379 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650275011.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:36 Heat of formation + Delta-G solvation = 64.837457 kcal Electronic energy + Delta-G solvation = -30792.040875 eV Core-core repulsion = 26856.524550 eV Total energy + Delta-G solvation = -3935.516325 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.30182 -40.37788 -38.39815 -35.94494 -34.90931 -34.19154 -33.33506 -31.94715 -31.02847 -28.64695 -27.40191 -26.72908 -26.52285 -25.24149 -24.69277 -23.25069 -21.91247 -21.32385 -20.39841 -19.72027 -18.93909 -17.69286 -17.18651 -16.54622 -16.20601 -16.01732 -15.59655 -15.17273 -15.07630 -14.47568 -14.43435 -14.03170 -13.87490 -13.53130 -13.47200 -13.00605 -12.83050 -12.78027 -12.62288 -12.43854 -12.37157 -12.24270 -11.91712 -11.73328 -11.50299 -11.32390 -11.06186 -10.98253 -10.80270 -10.73492 -10.53374 -10.47265 -10.21476 -9.95156 -9.93512 -9.44406 -9.42514 -9.36170 -8.97950 -8.66257 -8.45258 -7.72140 -6.29243 -4.34854 2.39857 2.50777 2.92881 2.95111 3.29397 3.40257 3.45670 3.89423 4.07844 4.34201 4.42397 4.52301 4.59412 4.84722 4.93094 5.03668 5.08056 5.16292 5.26739 5.28578 5.40427 5.44435 5.48047 5.56443 5.61639 5.68818 5.76200 5.80044 5.82850 5.89954 5.96249 6.02172 6.04034 6.09373 6.25979 6.30053 6.37733 6.39628 6.57218 6.64428 6.76361 6.86965 6.89751 6.95542 7.14743 7.15221 7.37271 7.53960 7.88388 7.95349 8.24877 8.69525 9.32850 9.53702 10.78574 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.019642 B = 0.003231 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.194103 B = 8662.927593 C = 9070.230223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.738 5.738 3 C 0.520 3.480 4 O -0.537 6.537 5 C -0.110 4.110 6 C -0.094 4.094 7 C 0.071 3.929 8 N -0.457 5.457 9 C 0.300 3.700 10 N -0.323 5.323 11 N -0.301 5.301 12 C 0.232 3.768 13 C 0.112 3.888 14 C -0.121 4.121 15 C -0.130 4.130 16 C -0.525 4.525 17 H 0.084 0.916 18 C 0.091 3.909 19 N -0.882 5.882 20 Si 0.804 3.196 21 H -0.278 1.278 22 H -0.309 1.309 23 H -0.176 1.176 24 N -0.444 5.444 25 C 0.080 3.920 26 C 0.067 3.933 27 C -0.104 4.104 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.074 0.926 31 H 0.402 0.598 32 H 0.098 0.902 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.052 0.948 37 H 0.060 0.940 38 H 0.036 0.964 39 H 0.047 0.953 40 H 0.045 0.955 41 H 0.044 0.956 42 H 0.057 0.943 43 H 0.266 0.734 44 H 0.063 0.937 45 H 0.075 0.925 46 H 0.121 0.879 47 H 0.052 0.948 48 H 0.081 0.919 49 H 0.080 0.920 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.105 0.660 -8.973 17.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.390 5.390 3 C 0.306 3.694 4 O -0.413 6.413 5 C -0.131 4.131 6 C -0.132 4.132 7 C -0.056 4.056 8 N -0.183 5.183 9 C -0.056 4.056 10 N -0.169 5.169 11 N -0.143 5.143 12 C -0.035 4.035 13 C 0.108 3.892 14 C -0.179 4.179 15 C -0.188 4.188 16 C -0.562 4.562 17 H 0.102 0.898 18 C -0.115 4.115 19 N -0.517 5.517 20 Si 0.634 3.366 21 H -0.205 1.205 22 H -0.237 1.237 23 H -0.099 1.099 24 N -0.133 5.133 25 C -0.063 4.063 26 C -0.060 4.060 27 C -0.142 4.142 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.093 0.907 31 H 0.236 0.764 32 H 0.116 0.884 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.055 0.945 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.081 0.919 45 H 0.094 0.906 46 H 0.139 0.861 47 H 0.070 0.930 48 H 0.099 0.901 49 H 0.098 0.902 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -15.269 0.981 -9.710 18.122 hybrid contribution 0.094 -1.404 0.143 1.414 sum -15.175 -0.423 -9.568 17.945 Atomic orbital electron populations 1.21529 0.79761 1.02140 1.02306 1.45864 1.07744 1.08953 1.76481 1.20725 0.90103 0.83433 0.75089 1.90702 1.70455 1.31327 1.48843 1.21451 0.91006 0.99884 1.00767 1.21432 0.93711 0.94138 1.03906 1.22083 0.94694 0.99186 0.89683 1.58429 1.04835 1.15480 1.39536 1.21980 0.90522 1.05087 0.87987 1.74346 0.95955 1.21099 1.25509 1.74066 1.14526 1.17439 1.08232 1.25879 0.84854 0.99056 0.93703 1.17207 0.85869 0.93688 0.92425 1.21700 1.01580 0.94977 0.99670 1.21978 0.97276 1.00507 0.99018 1.20757 1.53164 0.91782 0.90521 0.89790 1.24958 0.92867 0.97997 0.95656 1.69899 1.45087 1.11104 1.25624 0.88366 0.79278 0.80004 0.88982 1.20492 1.23727 1.09899 1.45912 1.06826 1.45933 1.14647 1.22166 1.00655 0.97981 0.85525 1.22094 0.94324 0.87049 1.02558 1.21601 0.95138 1.00176 0.97298 0.92215 0.92320 0.90734 0.76387 0.88367 0.90071 0.90381 0.90267 0.92955 0.92086 0.94516 0.93362 0.93672 0.93684 0.92407 0.92401 0.91863 0.90599 0.86123 0.92989 0.90095 0.90180 0.90679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.56 10.70 59.85 0.64 1.20 16 2 N -0.74 -5.49 5.62 -67.07 -0.38 -5.87 16 3 C 0.52 5.48 7.16 -10.98 -0.08 5.40 16 4 O -0.54 -7.75 15.98 5.56 0.09 -7.66 16 5 C -0.11 -1.05 2.59 -91.65 -0.24 -1.29 16 6 C -0.09 -1.04 4.68 -26.65 -0.12 -1.17 16 7 C 0.07 0.94 5.31 -3.83 -0.02 0.91 16 8 N -0.46 -6.99 4.67 -174.55 -0.82 -7.80 16 9 C 0.30 5.80 6.47 -318.87 -2.06 3.73 16 10 N -0.32 -7.04 12.11 30.32 0.37 -6.67 16 11 N -0.30 -7.00 8.88 32.99 0.29 -6.71 16 12 C 0.23 5.13 4.25 -154.01 -0.65 4.48 16 13 C 0.11 2.42 0.55 -156.81 -0.09 2.34 16 14 C -0.12 -2.21 8.34 37.16 0.31 -1.90 16 15 C -0.13 -2.78 7.61 37.16 0.28 -2.49 16 16 C -0.52 -13.04 6.33 -34.44 -0.22 -13.26 16 17 H 0.08 2.21 7.99 -52.49 -0.42 1.79 16 18 C 0.09 2.45 5.38 -17.82 -0.10 2.36 16 19 N -0.88 -25.23 13.96 55.43 0.77 -24.45 16 20 Si 0.80 20.54 23.52 -169.99 -4.00 16.54 16 21 H -0.28 -7.11 6.92 56.52 0.39 -6.72 16 22 H -0.31 -8.30 7.11 56.52 0.40 -7.90 16 23 H -0.18 -4.41 3.23 56.52 0.18 -4.22 16 24 N -0.44 -8.96 3.21 -121.45 -0.39 -9.35 16 25 C 0.08 1.39 10.12 59.85 0.61 2.00 16 26 C 0.07 0.90 5.40 -3.84 -0.02 0.88 16 27 C -0.10 -1.01 5.26 -26.65 -0.14 -1.15 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.40 1.93 8.32 -40.82 -0.34 1.59 16 32 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.08 1.01 8.04 -51.93 -0.42 0.59 16 34 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.08 1.09 8.10 -51.93 -0.42 0.67 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.05 0.84 7.26 -51.93 -0.38 0.46 16 40 H 0.04 1.05 2.68 -51.93 -0.14 0.91 16 41 H 0.04 0.89 7.97 -51.93 -0.41 0.48 16 42 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 43 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 44 H 0.06 0.94 8.14 -51.92 -0.42 0.52 16 45 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 46 H 0.12 2.37 5.79 -51.93 -0.30 2.07 16 47 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.08 1.21 8.10 -51.93 -0.42 0.79 16 49 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 50 H 0.07 0.54 7.67 -51.93 -0.40 0.14 16 LS Contribution 381.42 15.07 5.75 5.75 Total: -1.00 -33.25 381.42 -8.72 -41.97 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -8.51 Total: 2.21 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: -1.90 Total: 2.03 kcal Atomic # 7 Polarization: -60.71 SS G_CDS: -0.15 Total: -60.85 kcal Atomic # 8 Polarization: -7.75 SS G_CDS: 0.09 Total: -7.66 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.00 Total: 16.54 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.25 -8.72 -41.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650275011.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.811 kcal (2) G-P(sol) polarization free energy of solvation -33.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds