Wall clock time and date at job start Tue Mar 31 2020 18:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36598 * 126.58005 * 2 1 4 4 C 1.47515 * 125.76973 * 0.04566 * 3 2 1 5 5 O 1.21597 * 120.00067 * 359.71322 * 4 3 2 6 6 N 1.34780 * 119.99840 * 179.71259 * 4 3 2 7 7 C 1.46499 * 119.99850 * 179.97438 * 6 4 3 8 8 C 1.52995 * 109.47206 * 180.02562 * 7 6 4 9 9 C 1.53003 * 109.47266 * 180.02562 * 8 7 6 10 10 N 1.46498 * 109.47086 * 180.02562 * 9 8 7 11 11 C 1.36940 * 119.99953 * 270.27264 * 10 9 8 12 12 H 1.08001 * 119.99690 * 140.67459 * 11 10 9 13 13 C 1.38808 * 119.99695 * 320.67089 * 11 10 9 14 14 N 1.31624 * 119.99605 * 156.96379 * 13 11 10 15 15 Si 1.86802 * 120.00193 * 336.96021 * 13 11 10 16 16 H 1.48493 * 109.47076 * 91.95526 * 15 13 11 17 17 H 1.48506 * 109.47119 * 211.95441 * 15 13 11 18 18 H 1.48495 * 109.47078 * 331.95486 * 15 13 11 19 19 C 1.46506 * 120.00274 * 89.99849 * 10 9 8 20 20 C 1.53001 * 117.50103 * 184.01146 * 19 10 9 21 21 C 1.52998 * 117.49984 * 115.38744 * 19 10 9 22 22 N 1.34401 * 108.45599 * 179.77671 * 3 2 1 23 23 N 1.28754 * 109.52795 * 0.23196 * 22 3 2 24 24 N 1.34816 * 126.58039 * 180.17807 * 2 1 3 25 25 C 1.46501 * 126.59449 * 359.97438 * 24 2 1 26 26 C 1.52996 * 109.47134 * 120.25017 * 25 24 2 27 27 C 1.53004 * 109.47192 * 240.25005 * 25 24 2 28 28 H 1.08997 * 109.47295 * 90.02524 * 1 2 3 29 29 H 1.09006 * 109.47111 * 210.02250 * 1 2 3 30 30 H 1.08999 * 109.46930 * 330.01446 * 1 2 3 31 31 H 0.96993 * 120.00138 * 0.02562 * 6 4 3 32 32 H 1.09008 * 109.47063 * 59.99989 * 7 6 4 33 33 H 1.08999 * 109.47245 * 300.00491 * 7 6 4 34 34 H 1.08994 * 109.47140 * 60.00148 * 8 7 6 35 35 H 1.09002 * 109.46850 * 300.00159 * 8 7 6 36 36 H 1.08994 * 109.47266 * 59.99802 * 9 8 7 37 37 H 1.09002 * 109.46970 * 299.99662 * 9 8 7 38 38 H 0.97005 * 119.99435 * 180.02562 * 14 13 11 39 39 H 1.09007 * 115.54811 * 329.71276 * 19 10 9 40 40 H 1.08996 * 117.49725 * 359.97438 * 20 19 10 41 41 H 1.09002 * 117.49787 * 145.01941 * 20 19 10 42 42 H 1.09007 * 117.49185 * 214.98020 * 21 19 10 43 43 H 1.08998 * 117.49996 * 359.97438 * 21 19 10 44 44 H 1.08995 * 109.46925 * 0.24863 * 25 24 2 45 45 H 1.09008 * 109.47170 * 59.99785 * 26 25 24 46 46 H 1.08999 * 109.47352 * 180.02562 * 26 25 24 47 47 H 1.08999 * 109.47139 * 300.00330 * 26 25 24 48 48 H 1.08993 * 109.47456 * 59.99658 * 27 25 24 49 49 H 1.08999 * 109.46905 * 180.02562 * 27 25 24 50 50 H 1.09008 * 109.46897 * 300.00084 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8738 2.5026 0.0010 5 8 0.6859 2.7627 -0.0034 6 7 2.7817 3.4987 0.0067 7 6 2.3375 4.8947 0.0071 8 6 3.5574 5.8181 0.0135 9 6 3.0936 7.2761 0.0145 10 7 4.2617 8.1602 0.0200 11 6 4.8071 8.5667 1.2085 12 1 5.8796 8.6346 1.3152 13 6 3.9813 8.8917 2.2758 14 7 4.4454 8.8400 3.5064 15 14 2.2114 9.4025 1.9658 16 1 1.3333 8.2066 2.0262 17 1 1.7894 10.3793 3.0017 18 1 2.1047 10.0278 0.6231 19 6 4.8501 8.6045 -1.2460 20 6 6.1237 9.4494 -1.1751 21 6 4.7947 10.1000 -1.5644 22 7 3.5984 0.6788 0.0050 23 7 3.6299 -0.6083 0.0031 24 7 2.3104 -1.0826 -0.0034 25 6 1.8864 -2.4849 -0.0072 26 6 2.4339 -3.1798 -1.2554 27 6 2.4244 -3.1838 1.2430 28 1 -0.3634 -0.0005 -1.0276 29 1 -0.3634 -0.8898 0.5142 30 1 -0.3633 0.8901 0.5136 31 1 3.7292 3.2912 0.0098 32 1 1.7337 5.0836 0.8948 33 1 1.7417 5.0867 -0.8852 34 1 4.1608 5.6290 -0.8744 35 1 4.1536 5.6262 0.9056 36 1 2.4904 7.4648 0.9025 37 1 2.4972 7.4682 -0.8774 38 1 3.8682 9.0667 4.2524 39 1 4.7532 7.9085 -2.0793 40 1 6.5235 9.6750 -0.1866 41 1 6.8650 9.3093 -1.9618 42 1 4.6617 10.3878 -2.6074 43 1 4.3201 10.7532 -0.8322 44 1 0.7976 -2.5352 -0.0114 45 1 3.5228 -3.1295 -1.2512 46 1 2.1180 -4.2230 -1.2585 47 1 2.0507 -2.6819 -2.1461 48 1 2.0344 -2.6888 2.1323 49 1 2.1092 -4.2273 1.2399 50 1 3.5133 -3.1335 1.2472 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001660739982.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:23 Heat of formation + Delta-G solvation = 98.072338 kcal Electronic energy + Delta-G solvation = -28611.005999 eV Core-core repulsion = 24676.930847 eV Total energy + Delta-G solvation = -3934.075153 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.48114 -39.28156 -37.35016 -36.78033 -35.40773 -33.66779 -33.20522 -31.92413 -31.20869 -29.77588 -28.04004 -27.93370 -25.43308 -24.26990 -23.91420 -22.71594 -21.58568 -21.14908 -20.64285 -20.05129 -19.56760 -17.84444 -16.70704 -16.48551 -16.44428 -15.69603 -15.57532 -15.27550 -15.00212 -14.94213 -14.41848 -14.04018 -13.83353 -13.69235 -13.50473 -13.45717 -13.34887 -12.85527 -12.75758 -12.66665 -12.41179 -12.19849 -12.15490 -12.07969 -12.06293 -11.78385 -11.27664 -11.11110 -11.01126 -10.81432 -10.60495 -10.43738 -10.34587 -10.06380 -9.87893 -9.68473 -9.43454 -9.38735 -9.33696 -8.82889 -8.48153 -6.70663 -6.02459 -3.45095 0.93143 1.63170 1.72231 3.25074 3.31422 3.31914 3.47596 3.54306 3.83121 3.96083 4.19576 4.30645 4.34392 4.50897 4.59023 4.76079 4.77402 4.89814 4.92245 4.98424 5.09488 5.10016 5.18240 5.27872 5.35604 5.45544 5.52600 5.53915 5.60665 5.63813 5.80092 5.81548 5.87034 6.01029 6.06372 6.13129 6.20332 6.25398 6.38582 6.45068 6.52651 6.63492 6.79901 6.94163 6.97966 7.14091 7.55801 7.86189 8.04910 8.26977 8.40075 8.98339 9.68974 10.09765 11.12285 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.018089 B = 0.002212 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.530088 B =12656.442569 C =13086.268845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.121 3.879 3 C -0.104 4.104 4 C 0.601 3.399 5 O -0.543 6.543 6 N -0.708 5.708 7 C 0.119 3.881 8 C -0.146 4.146 9 C 0.143 3.857 10 N -0.572 5.572 11 C -0.270 4.270 12 H 0.082 0.918 13 C 0.041 3.959 14 N -0.895 5.895 15 Si 0.872 3.128 16 H -0.281 1.281 17 H -0.301 1.301 18 H -0.267 1.267 19 C 0.120 3.880 20 C -0.189 4.189 21 C -0.225 4.225 22 N -0.202 5.202 23 N -0.065 5.065 24 N -0.359 5.359 25 C 0.144 3.856 26 C -0.162 4.162 27 C -0.164 4.164 28 H 0.091 0.909 29 H 0.073 0.927 30 H 0.113 0.887 31 H 0.409 0.591 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.078 0.922 36 H 0.060 0.940 37 H 0.043 0.957 38 H 0.264 0.736 39 H 0.091 0.909 40 H 0.102 0.898 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.088 0.912 44 H 0.109 0.891 45 H 0.075 0.925 46 H 0.082 0.918 47 H 0.064 0.936 48 H 0.064 0.936 49 H 0.082 0.918 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.707 -24.493 -9.295 27.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.017 4.017 3 C -0.243 4.243 4 C 0.385 3.615 5 O -0.420 6.420 6 N -0.358 5.358 7 C -0.004 4.004 8 C -0.187 4.187 9 C 0.017 3.983 10 N -0.291 5.291 11 C -0.399 4.399 12 H 0.099 0.901 13 C -0.161 4.161 14 N -0.535 5.535 15 Si 0.701 3.299 16 H -0.209 1.209 17 H -0.229 1.229 18 H -0.191 1.191 19 C 0.012 3.988 20 C -0.227 4.227 21 C -0.265 4.265 22 N -0.076 5.076 23 N -0.044 5.044 24 N -0.146 5.146 25 C 0.042 3.958 26 C -0.220 4.220 27 C -0.222 4.222 28 H 0.109 0.891 29 H 0.091 0.909 30 H 0.132 0.868 31 H 0.244 0.756 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.097 0.903 36 H 0.078 0.922 37 H 0.062 0.938 38 H 0.074 0.926 39 H 0.109 0.891 40 H 0.121 0.879 41 H 0.095 0.905 42 H 0.091 0.909 43 H 0.107 0.893 44 H 0.127 0.873 45 H 0.094 0.906 46 H 0.101 0.899 47 H 0.083 0.917 48 H 0.083 0.917 49 H 0.101 0.899 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.091 -24.682 -9.076 27.237 hybrid contribution -1.433 0.392 0.024 1.486 sum -8.525 -24.290 -9.052 27.287 Atomic orbital electron populations 1.20722 0.84807 1.05346 1.04580 1.21919 0.96218 0.86387 0.97140 1.21271 0.89047 0.95488 1.18524 1.16737 0.85650 0.82500 0.76568 1.90751 1.15945 1.83675 1.51671 1.45900 1.10248 1.06277 1.73358 1.21519 0.98179 0.78623 1.02121 1.22392 0.96506 0.96645 1.03114 1.21089 0.89638 0.87744 0.99872 1.43656 1.33116 1.51136 1.01171 1.18702 0.92790 1.41655 0.86729 0.90083 1.25511 0.97872 0.97497 0.95197 1.69878 1.37037 1.48587 0.97991 0.87047 0.86366 0.78436 0.78021 1.20918 1.22912 1.19120 1.21168 0.98175 0.89716 0.89783 1.23057 0.90848 1.06278 1.02525 1.23374 1.02354 1.00995 0.99820 1.74633 1.19033 1.04176 1.09715 1.81923 0.96264 1.03262 1.22981 1.50640 1.06344 1.07190 1.50393 1.21642 1.00454 0.75319 0.98345 1.22155 1.03259 1.00854 0.95758 1.22170 1.03352 1.00842 0.95794 0.89097 0.90856 0.86826 0.75605 0.91313 0.91600 0.92013 0.90346 0.92231 0.93831 0.92614 0.89088 0.87921 0.90530 0.90873 0.89327 0.87307 0.90630 0.89902 0.91721 0.91662 0.89901 0.90613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.75 9.40 36.01 0.34 -0.41 16 2 C 0.12 1.32 7.02 -81.87 -0.57 0.74 16 3 C -0.10 -1.44 6.99 -83.55 -0.58 -2.02 16 4 C 0.60 9.28 7.82 -12.48 -0.10 9.18 16 5 O -0.54 -9.21 14.72 5.28 0.08 -9.13 16 6 N -0.71 -10.72 5.55 -61.35 -0.34 -11.06 16 7 C 0.12 1.93 5.67 -4.04 -0.02 1.91 16 8 C -0.15 -2.61 5.65 -26.73 -0.15 -2.76 16 9 C 0.14 2.97 4.57 -4.04 -0.02 2.95 16 10 N -0.57 -13.22 2.37 -165.66 -0.39 -13.61 16 11 C -0.27 -7.32 8.93 -15.06 -0.13 -7.46 16 12 H 0.08 2.38 6.86 -52.49 -0.36 2.02 16 13 C 0.04 1.15 5.28 -17.43 -0.09 1.06 16 14 N -0.89 -26.92 13.97 55.49 0.78 -26.15 16 15 Si 0.87 21.98 25.32 -169.99 -4.30 17.67 16 16 H -0.28 -6.85 6.51 56.52 0.37 -6.48 16 17 H -0.30 -7.77 7.11 56.52 0.40 -7.37 16 18 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 19 C 0.12 2.41 6.57 -67.93 -0.45 1.96 16 20 C -0.19 -3.63 9.80 -26.73 -0.26 -3.89 16 21 C -0.22 -4.33 10.35 -26.73 -0.28 -4.60 16 22 N -0.20 -2.92 12.04 32.84 0.40 -2.52 16 23 N -0.07 -0.84 13.67 60.35 0.82 -0.01 16 24 N -0.36 -3.49 3.28 -50.41 -0.17 -3.66 16 25 C 0.14 0.79 3.68 -67.93 -0.25 0.54 16 26 C -0.16 -0.75 9.47 37.16 0.35 -0.39 16 27 C -0.16 -0.79 9.47 37.16 0.35 -0.44 16 28 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.35 7.20 -51.93 -0.37 -0.03 16 30 H 0.11 1.11 6.43 -51.93 -0.33 0.78 16 31 H 0.41 5.81 8.16 -40.82 -0.33 5.48 16 32 H 0.07 1.20 8.14 -51.92 -0.42 0.78 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.08 1.57 8.14 -51.93 -0.42 1.14 16 36 H 0.06 1.37 3.46 -51.93 -0.18 1.19 16 37 H 0.04 0.82 8.07 -51.93 -0.42 0.40 16 38 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 39 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 40 H 0.10 2.22 6.45 -51.93 -0.33 1.89 16 41 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 42 H 0.07 1.21 8.14 -51.92 -0.42 0.79 16 43 H 0.09 1.92 8.14 -51.93 -0.42 1.50 16 44 H 0.11 0.34 6.79 -51.93 -0.35 -0.01 16 45 H 0.07 0.45 8.14 -51.92 -0.42 0.03 16 46 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 47 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 50 H 0.07 0.47 8.14 -51.92 -0.42 0.05 16 LS Contribution 406.17 15.07 6.12 6.12 Total: -1.00 -33.00 406.17 -7.07 -40.07 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -8.20 Total: 5.91 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: -1.87 Total: -3.63 kcal Atomic # 7 Polarization: -58.11 SS G_CDS: 1.10 Total: -57.02 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.08 Total: -9.13 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.30 Total: 17.67 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.00 -7.07 -40.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660739982.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.145 kcal (2) G-P(sol) polarization free energy of solvation -32.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds