Wall clock time and date at job start Tue Mar 31 2020 20:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47581 * 2 1 4 4 C 1.53001 * 109.46981 * 119.99622 * 2 1 3 5 5 C 1.53002 * 109.47035 * 64.99848 * 4 2 1 6 6 N 1.46505 * 109.47166 * 180.02562 * 5 4 2 7 7 N 1.40070 * 126.04177 * 270.16678 * 6 5 4 8 8 C 1.30847 * 108.37124 * 180.24492 * 7 6 5 9 9 C 1.39765 * 108.31939 * 359.76536 * 8 7 6 10 10 C 1.35249 * 126.04503 * 89.99878 * 6 5 4 11 11 N 1.39496 * 126.21461 * 0.02562 * 10 6 5 12 12 C 1.34779 * 119.99824 * 179.71363 * 11 10 6 13 13 O 1.21594 * 119.99986 * 354.89154 * 12 11 10 14 14 N 1.34772 * 120.00017 * 174.89297 * 12 11 10 15 15 C 1.46972 * 120.59232 * 185.17742 * 14 12 11 16 16 C 1.53366 * 108.63361 * 235.20114 * 15 14 12 17 17 N 1.46966 * 108.63690 * 310.57492 * 16 15 14 18 18 C 1.36932 * 120.59630 * 235.20173 * 17 16 15 19 19 H 1.08004 * 119.99470 * 148.32292 * 18 17 16 20 20 C 1.38808 * 120.00396 * 328.04862 * 18 17 16 21 21 N 1.31626 * 119.99650 * 350.31805 * 20 18 17 22 22 Si 1.86800 * 120.00359 * 170.31191 * 20 18 17 23 23 H 1.48502 * 109.47105 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47034 * 120.00107 * 22 20 18 25 25 H 1.48506 * 109.47192 * 240.00583 * 22 20 18 26 26 C 1.46967 * 118.81029 * 55.48030 * 17 16 15 27 27 C 1.46966 * 120.59683 * 5.15251 * 14 12 11 28 28 H 1.08998 * 109.46775 * 59.99792 * 1 2 3 29 29 H 1.08991 * 109.47583 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47010 * 300.00969 * 1 2 3 31 31 H 1.08997 * 109.47416 * 239.99331 * 2 1 3 32 32 H 1.08996 * 109.47443 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.46654 * 299.99558 * 3 2 1 34 34 H 1.08997 * 109.47292 * 59.99255 * 3 2 1 35 35 H 1.09005 * 109.47411 * 304.99923 * 4 2 1 36 36 H 1.08999 * 109.47118 * 184.99886 * 4 2 1 37 37 H 1.08996 * 109.47134 * 59.99851 * 5 4 2 38 38 H 1.08999 * 109.47198 * 299.99988 * 5 4 2 39 39 H 1.07993 * 125.84177 * 179.74752 * 8 7 6 40 40 H 1.07997 * 126.08743 * 179.97438 * 9 8 7 41 41 H 0.97001 * 120.00408 * 359.71631 * 11 10 6 42 42 H 1.09001 * 109.60707 * 115.46163 * 15 14 12 43 43 H 1.08998 * 109.61090 * 354.94906 * 15 14 12 44 44 H 1.08997 * 109.61242 * 190.83563 * 16 15 14 45 45 H 1.09001 * 109.75199 * 70.40361 * 16 15 14 46 46 H 0.96997 * 119.99750 * 180.02562 * 21 20 18 47 47 H 1.09000 * 109.61218 * 64.26540 * 26 17 16 48 48 H 1.08994 * 109.60977 * 184.77882 * 26 17 16 49 49 H 1.09000 * 109.60764 * 244.54640 * 27 14 12 50 50 H 1.08997 * 109.60659 * 4.87786 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6351 -2.1954 1.1881 6 7 2.1229 -2.8859 2.3847 7 7 3.3666 -3.5150 2.5237 8 6 3.4397 -4.0227 3.7274 9 6 2.2496 -3.7315 4.4000 10 6 1.4532 -3.0257 3.5514 11 7 0.1760 -2.5400 3.8319 12 6 -0.3770 -2.7576 5.0416 13 8 0.1966 -3.4551 5.8557 14 7 -1.5658 -2.2020 5.3488 15 6 -2.1273 -2.3363 6.7004 16 6 -3.5315 -2.9429 6.5896 17 7 -4.2894 -2.1914 5.5793 18 6 -5.4973 -1.6269 5.8915 19 1 -5.8070 -0.7123 5.4076 20 6 -6.3261 -2.2331 6.8256 21 7 -6.0453 -3.4400 7.2694 22 14 -7.8398 -1.3360 7.4527 23 1 -7.9310 -0.0042 6.8020 24 1 -9.0537 -2.1282 7.1303 25 1 -7.7382 -1.1625 8.9241 26 6 -3.7306 -2.0618 4.2262 27 6 -2.3237 -1.4504 4.3385 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0275 0.0005 30 1 -0.3633 0.5140 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 3.1301 1.4424 -0.0005 33 1 1.6768 1.9563 -0.8901 34 1 1.6767 1.9564 0.8899 35 1 1.6053 -0.2616 2.1371 36 1 3.1263 -0.6443 1.2952 37 1 2.0697 -2.6550 0.3004 38 1 0.5488 -2.2723 1.1422 39 1 4.2763 -4.5729 4.1320 40 1 2.0052 -4.0162 5.4127 41 1 -0.3142 -2.0458 3.1563 42 1 -2.1889 -1.3546 7.1701 43 1 -1.4920 -2.9909 7.2970 44 1 -4.0371 -2.8733 7.5527 45 1 -3.4586 -3.9882 6.2895 46 1 -6.6246 -3.8637 7.9219 47 1 -3.6689 -3.0453 3.7602 48 1 -4.3676 -1.4102 3.6282 49 1 -2.3992 -0.4057 4.6401 50 1 -1.8165 -1.5175 3.3761 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661026729.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:49 Heat of formation + Delta-G solvation = 82.707329 kcal Electronic energy + Delta-G solvation = -29952.995667 eV Core-core repulsion = 26018.254237 eV Total energy + Delta-G solvation = -3934.741430 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.51006 -39.88388 -37.38596 -37.06310 -34.87804 -33.97753 -33.14844 -31.29761 -30.42263 -28.95871 -28.57879 -27.56026 -26.86468 -24.21897 -23.90442 -23.05474 -21.98442 -21.05751 -20.45033 -20.11570 -19.05716 -18.51433 -17.28773 -16.45015 -15.95573 -15.84806 -15.38969 -15.12524 -14.85449 -14.56296 -14.46134 -14.05587 -13.90418 -13.67051 -13.57665 -13.45314 -13.34885 -13.15772 -12.83821 -12.74061 -12.59973 -12.23732 -11.88995 -11.77131 -11.33336 -11.22325 -11.12901 -11.03684 -11.00033 -10.91833 -10.77963 -10.68804 -10.58478 -10.27624 -10.08559 -9.91448 -9.68870 -8.96029 -8.66907 -8.45925 -7.88739 -6.73814 -5.90250 -3.42663 1.88027 2.02521 2.87062 2.94241 3.29377 3.37194 3.38867 3.45633 3.83566 4.25678 4.35322 4.37158 4.47980 4.56421 4.89835 5.01952 5.02280 5.03668 5.20139 5.25877 5.28427 5.30750 5.44023 5.48090 5.55413 5.57398 5.60430 5.61087 5.66102 5.72529 5.78825 5.90553 5.95582 5.97501 6.06506 6.17502 6.26745 6.31756 6.41074 6.58627 6.69514 6.87494 6.95698 7.15668 7.21981 7.55129 7.66309 7.75552 8.01378 8.32753 8.62946 9.06753 9.66759 10.24712 11.16496 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013786 B = 0.002961 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.626586 B = 9453.232581 C =11108.981614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.093 4.093 3 C -0.147 4.147 4 C -0.133 4.133 5 C 0.131 3.869 6 N -0.391 5.391 7 N -0.302 5.302 8 C 0.060 3.940 9 C -0.286 4.286 10 C 0.334 3.666 11 N -0.666 5.666 12 C 0.710 3.290 13 O -0.566 6.566 14 N -0.605 5.605 15 C 0.104 3.896 16 C 0.157 3.843 17 N -0.590 5.590 18 C -0.260 4.260 19 H 0.067 0.933 20 C 0.007 3.993 21 N -0.902 5.902 22 Si 0.907 3.093 23 H -0.277 1.277 24 H -0.289 1.289 25 H -0.288 1.288 26 C 0.132 3.868 27 C 0.093 3.907 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.097 0.903 38 H 0.085 0.915 39 H 0.183 0.817 40 H 0.174 0.826 41 H 0.403 0.597 42 H 0.062 0.938 43 H 0.085 0.915 44 H 0.104 0.896 45 H 0.025 0.975 46 H 0.256 0.744 47 H 0.024 0.976 48 H 0.068 0.932 49 H 0.071 0.929 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.965 6.268 -13.002 20.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.112 4.112 3 C -0.204 4.204 4 C -0.171 4.171 5 C 0.009 3.991 6 N -0.179 5.179 7 N -0.124 5.124 8 C -0.126 4.126 9 C -0.318 4.318 10 C 0.113 3.887 11 N -0.318 5.318 12 C 0.412 3.588 13 O -0.442 6.442 14 N -0.341 5.341 15 C -0.020 4.020 16 C 0.031 3.969 17 N -0.313 5.313 18 C -0.389 4.389 19 H 0.085 0.915 20 C -0.192 4.192 21 N -0.545 5.545 22 Si 0.737 3.263 23 H -0.202 1.202 24 H -0.216 1.216 25 H -0.214 1.214 26 C 0.004 3.996 27 C -0.032 4.032 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.116 0.884 38 H 0.103 0.897 39 H 0.200 0.800 40 H 0.191 0.809 41 H 0.241 0.759 42 H 0.080 0.920 43 H 0.103 0.897 44 H 0.122 0.878 45 H 0.043 0.957 46 H 0.066 0.934 47 H 0.042 0.958 48 H 0.087 0.913 49 H 0.089 0.911 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 15.704 5.918 -13.431 21.495 hybrid contribution -1.599 0.581 0.575 1.796 sum 14.105 6.499 -12.856 20.161 Atomic orbital electron populations 1.21973 0.94863 1.01982 1.02497 1.21068 0.96107 0.96524 0.97547 1.21823 1.01026 0.95551 1.02047 1.22103 1.02514 0.93642 0.98877 1.21736 0.99172 0.92193 0.85966 1.48596 1.13003 1.46467 1.09850 1.77399 0.97729 1.17062 1.20199 1.23735 0.98642 0.98740 0.91509 1.21653 0.94880 1.11565 1.03653 1.17720 0.85123 0.97809 0.88058 1.42179 1.14616 1.58765 1.16253 1.15550 0.81586 0.80800 0.80891 1.90832 1.62960 1.41735 1.48701 1.47296 1.17660 1.54983 1.14161 1.22541 0.97776 1.01497 0.80145 1.21267 0.86612 0.92732 0.96309 1.43955 1.20173 1.62814 1.04351 1.19214 0.93508 1.03438 1.22763 0.91530 1.25233 0.97753 0.95198 1.01061 1.69953 1.38778 1.12793 1.33003 0.86157 0.82645 0.79007 0.78524 1.20191 1.21570 1.21416 1.21351 0.90994 0.97778 0.89475 1.22415 0.95115 0.96451 0.89266 0.92202 0.92493 0.92241 0.90775 0.92632 0.92416 0.92509 0.91414 0.90653 0.88447 0.89665 0.79990 0.80918 0.75924 0.91991 0.89706 0.87784 0.95699 0.93353 0.95835 0.91348 0.91115 0.92565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.93 8.95 37.16 0.33 -0.60 16 2 C -0.09 -0.58 2.92 -90.62 -0.26 -0.85 16 3 C -0.15 -0.91 9.19 37.16 0.34 -0.56 16 4 C -0.13 -1.05 5.01 -26.73 -0.13 -1.19 16 5 C 0.13 1.17 6.01 -4.04 -0.02 1.15 16 6 N -0.39 -5.00 3.62 -60.39 -0.22 -5.22 16 7 N -0.30 -4.20 12.56 30.60 0.38 -3.81 16 8 C 0.06 0.79 12.01 -17.40 -0.21 0.58 16 9 C -0.29 -4.42 9.65 -39.78 -0.38 -4.80 16 10 C 0.33 4.89 7.66 -153.15 -1.17 3.72 16 11 N -0.67 -9.33 5.33 -15.84 -0.08 -9.41 16 12 C 0.71 12.30 8.26 -86.92 -0.72 11.58 16 13 O -0.57 -11.35 12.90 5.28 0.07 -11.28 16 14 N -0.61 -10.41 2.95 -177.94 -0.52 -10.94 16 15 C 0.10 1.98 6.60 -3.60 -0.02 1.96 16 16 C 0.16 3.60 5.45 -3.60 -0.02 3.58 16 17 N -0.59 -13.75 2.95 -171.77 -0.51 -14.26 16 18 C -0.26 -6.65 9.58 -15.06 -0.14 -6.79 16 19 H 0.07 1.66 7.85 -52.48 -0.41 1.25 16 20 C 0.01 0.18 5.07 -17.43 -0.09 0.09 16 21 N -0.90 -25.06 11.00 55.49 0.61 -24.45 16 22 Si 0.91 20.65 29.57 -169.99 -5.03 15.63 16 23 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 24 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 26 C 0.13 2.45 6.70 -3.37 -0.02 2.42 16 27 C 0.09 1.38 6.58 -3.37 -0.02 1.36 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.32 6.56 -51.93 -0.34 -0.02 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.09 0.65 5.92 -51.93 -0.31 0.34 16 39 H 0.18 1.76 8.06 -52.49 -0.42 1.34 16 40 H 0.17 2.97 5.84 -52.49 -0.31 2.66 16 41 H 0.40 4.52 5.44 -40.82 -0.22 4.30 16 42 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.08 1.63 6.99 -51.93 -0.36 1.27 16 44 H 0.10 2.64 6.02 -51.93 -0.31 2.33 16 45 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 47 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.07 1.19 7.93 -51.93 -0.41 0.77 16 49 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 50 H 0.06 0.63 5.61 -51.93 -0.29 0.34 16 LS Contribution 392.22 15.07 5.91 5.91 Total: -1.00 -31.31 392.22 -9.96 -41.27 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -8.02 Total: 4.91 kcal Atomic # 6 Polarization: 14.20 SS G_CDS: -2.55 Total: 11.65 kcal Atomic # 7 Polarization: -67.74 SS G_CDS: -0.34 Total: -68.08 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.07 Total: -11.28 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.03 Total: 15.63 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.31 -9.96 -41.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661026729.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.976 kcal (2) G-P(sol) polarization free energy of solvation -31.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds