Wall clock time and date at job start Tue Mar 31 2020 20:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52990 * 109.47426 * 2 1 4 4 C 1.52995 * 109.46980 * 239.99677 * 2 1 3 5 5 C 1.53004 * 109.47579 * 294.73615 * 4 2 1 6 6 H 1.08999 * 109.46857 * 54.17695 * 5 4 2 7 7 C 1.53008 * 109.46998 * 294.18356 * 5 4 2 8 8 N 1.46495 * 109.46849 * 184.99927 * 7 5 4 9 9 C 1.36946 * 119.99779 * 179.97438 * 8 7 5 10 10 H 1.08003 * 119.99839 * 359.97438 * 9 8 7 11 11 C 1.38804 * 120.00108 * 179.97438 * 9 8 7 12 12 N 1.31623 * 120.00044 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99968 * 179.97438 * 11 9 8 14 14 H 1.48495 * 109.47052 * 60.00443 * 13 11 9 15 15 H 1.48502 * 109.47051 * 180.02562 * 13 11 9 16 16 H 1.48495 * 109.47062 * 300.00160 * 13 11 9 17 17 N 1.46498 * 109.47538 * 174.17941 * 5 4 2 18 18 C 1.34773 * 120.00057 * 272.43792 * 17 5 4 19 19 O 1.21277 * 119.99920 * 4.94732 * 18 17 5 20 20 C 1.50701 * 120.00006 * 184.95125 * 18 17 5 21 21 N 1.46494 * 109.47426 * 179.97438 * 20 18 17 22 22 C 1.35316 * 125.87359 * 124.71154 * 21 20 18 23 23 C 1.35349 * 106.17732 * 179.90886 * 22 21 20 24 24 C 1.50697 * 126.74902 * 180.13019 * 23 22 21 25 25 C 1.52999 * 117.49973 * 343.86048 * 24 23 22 26 26 C 1.53000 * 60.00221 * 252.51402 * 25 24 23 27 27 N 1.33773 * 106.49431 * 0.35130 * 23 22 21 28 28 N 1.28634 * 108.88707 * 359.77686 * 27 23 22 29 29 H 1.09004 * 109.46366 * 56.34148 * 1 2 3 30 30 H 1.08994 * 109.47227 * 176.33825 * 1 2 3 31 31 H 1.08995 * 109.47064 * 296.34618 * 1 2 3 32 32 H 1.09003 * 109.46661 * 120.00264 * 2 1 3 33 33 H 1.09002 * 109.46992 * 59.99847 * 3 2 1 34 34 H 1.09002 * 109.47187 * 179.97438 * 3 2 1 35 35 H 1.09003 * 109.47417 * 299.99801 * 3 2 1 36 36 H 1.08993 * 109.47474 * 54.73686 * 4 2 1 37 37 H 1.09004 * 109.47213 * 174.73661 * 4 2 1 38 38 H 1.09009 * 109.46610 * 304.99567 * 7 5 4 39 39 H 1.08999 * 109.46902 * 64.99455 * 7 5 4 40 40 H 0.96989 * 120.00572 * 359.97438 * 8 7 5 41 41 H 0.97004 * 119.99865 * 179.97438 * 12 11 9 42 42 H 0.97001 * 119.99984 * 92.43429 * 17 5 4 43 43 H 1.08998 * 109.47076 * 300.00111 * 20 18 17 44 44 H 1.09000 * 109.47275 * 59.99555 * 20 18 17 45 45 H 1.07996 * 126.90410 * 0.02562 * 22 21 20 46 46 H 1.08995 * 115.55263 * 129.57662 * 24 23 22 47 47 H 1.09000 * 117.49614 * 0.02562 * 25 24 23 48 48 H 1.09001 * 117.49597 * 145.02390 * 25 24 23 49 49 H 1.08996 * 117.50027 * 252.50979 * 26 25 24 50 50 H 1.09002 * 117.51701 * 107.48120 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6409 -2.1970 -1.1848 6 1 0.5645 -2.2759 -1.0324 7 6 2.3714 -2.8726 -0.0224 8 7 2.0828 -4.3088 -0.0330 9 6 2.6314 -5.1245 0.9204 10 1 3.2772 -4.7090 1.6799 11 6 2.3576 -6.4852 0.9107 12 7 1.5710 -6.9916 -0.0152 13 14 3.1066 -7.5980 2.2108 14 1 2.6654 -7.1530 3.5570 15 1 2.6625 -8.9963 1.9810 16 1 4.5876 -7.5294 2.1274 17 7 2.0061 -2.8570 -2.4407 18 6 1.1461 -2.8541 -3.4783 19 8 0.1089 -2.2299 -3.4045 20 6 1.4732 -3.6266 -4.7302 21 7 0.3882 -3.4653 -5.7012 22 6 0.5204 -3.0160 -6.9707 23 6 -0.7225 -3.0282 -7.5064 24 6 -1.1055 -2.6183 -8.9051 25 6 -0.0932 -1.7927 -9.7015 26 6 -1.3623 -1.1317 -9.1602 27 7 -1.5446 -3.4711 -6.5485 28 7 -0.8557 -3.7212 -5.4914 29 1 -0.3632 0.5696 -0.8554 30 1 -0.3633 -1.0255 -0.0656 31 1 -0.3633 0.4560 0.9209 32 1 1.8933 -0.5139 0.8900 33 1 1.6767 1.9562 0.8900 34 1 3.1301 1.4423 0.0005 35 1 1.6768 1.9563 -0.8900 36 1 1.6018 -0.2649 -2.1367 37 1 3.1259 -0.6404 -1.2976 38 1 3.4451 -2.7169 -0.1284 39 1 2.0328 -2.4408 0.9195 40 1 1.5032 -4.6820 -0.7153 41 1 1.3800 -7.9426 -0.0222 42 1 2.8669 -3.2960 -2.5254 43 1 2.4025 -3.2496 -5.1574 44 1 1.5878 -4.6827 -4.4860 45 1 1.4342 -2.7110 -7.4588 46 1 -1.7144 -3.3358 -9.4551 47 1 0.8501 -1.5465 -9.2140 48 1 -0.0356 -1.9672 -10.7760 49 1 -2.1397 -0.8712 -9.8784 50 1 -1.2545 -0.4503 -8.3163 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667093452.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:31 Heat of formation + Delta-G solvation = 90.848133 kcal Electronic energy + Delta-G solvation = -29130.134032 eV Core-core repulsion = 25195.745614 eV Total energy + Delta-G solvation = -3934.388418 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.26025 -39.83081 -37.60236 -37.27860 -34.93358 -34.38058 -33.64931 -31.29663 -30.73249 -29.65964 -28.11611 -27.06299 -25.61267 -24.18785 -23.25325 -22.78034 -22.23222 -21.32209 -20.77986 -20.16746 -19.50417 -17.72574 -17.58619 -17.04575 -16.26605 -15.80100 -15.54998 -15.44732 -15.03710 -14.73686 -14.56448 -14.50264 -13.96852 -13.68129 -13.58030 -13.26163 -12.87350 -12.77386 -12.51066 -12.33692 -12.21517 -11.97271 -11.81293 -11.71829 -11.54104 -11.25295 -11.16739 -10.91951 -10.91174 -10.83418 -10.82184 -10.53244 -10.44286 -10.33580 -10.28830 -10.08235 -9.80512 -9.62092 -9.05475 -8.97394 -8.82099 -7.02667 -5.83749 -3.14180 1.57137 2.14675 2.52946 2.57758 3.25068 3.38717 3.43899 3.44950 3.55132 4.08259 4.39847 4.50809 4.56637 4.62441 4.65008 4.71663 4.87280 4.94077 4.98741 5.03026 5.05874 5.22252 5.33358 5.35329 5.48120 5.49441 5.57583 5.69438 5.70104 5.71931 5.79005 5.83242 5.86728 5.93515 5.95921 6.04101 6.10619 6.11992 6.15265 6.28236 6.34217 6.45280 6.46516 6.52601 6.63551 6.81055 7.58626 7.61923 8.24811 8.33897 8.60316 9.45707 10.00547 10.35753 11.38231 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.009528 B = 0.003013 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2937.906214 B = 9291.532703 C =11620.251627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.096 4.096 3 C -0.144 4.144 4 C -0.119 4.119 5 C 0.137 3.863 6 H 0.093 0.907 7 C 0.145 3.855 8 N -0.731 5.731 9 C -0.245 4.245 10 H 0.070 0.930 11 C -0.010 4.010 12 N -0.930 5.930 13 Si 0.907 3.093 14 H -0.286 1.286 15 H -0.291 1.291 16 H -0.286 1.286 17 N -0.705 5.705 18 C 0.504 3.496 19 O -0.515 6.515 20 C 0.093 3.907 21 N -0.276 5.276 22 C -0.053 4.053 23 C 0.005 3.995 24 C -0.068 4.068 25 C -0.171 4.171 26 C -0.166 4.166 27 N -0.268 5.268 28 N -0.042 5.042 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.050 0.950 32 H 0.078 0.922 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.050 0.950 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.024 0.976 39 H 0.037 0.963 40 H 0.385 0.615 41 H 0.257 0.743 42 H 0.405 0.595 43 H 0.132 0.868 44 H 0.136 0.864 45 H 0.187 0.813 46 H 0.121 0.879 47 H 0.095 0.905 48 H 0.101 0.899 49 H 0.100 0.900 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.456 14.175 -15.641 21.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.115 4.115 3 C -0.201 4.201 4 C -0.158 4.158 5 C 0.033 3.967 6 H 0.111 0.889 7 C 0.017 3.983 8 N -0.376 5.376 9 C -0.376 4.376 10 H 0.088 0.912 11 C -0.207 4.207 12 N -0.578 5.578 13 Si 0.738 3.262 14 H -0.212 1.212 15 H -0.217 1.217 16 H -0.213 1.213 17 N -0.356 5.356 18 C 0.287 3.713 19 O -0.390 6.390 20 C -0.033 4.033 21 N -0.069 5.069 22 C -0.202 4.202 23 C -0.132 4.132 24 C -0.088 4.088 25 C -0.209 4.209 26 C -0.204 4.204 27 N -0.135 5.135 28 N -0.022 5.022 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.096 0.904 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.041 0.959 39 H 0.054 0.946 40 H 0.219 0.781 41 H 0.066 0.934 42 H 0.240 0.760 43 H 0.150 0.850 44 H 0.154 0.846 45 H 0.204 0.796 46 H 0.139 0.861 47 H 0.113 0.887 48 H 0.120 0.880 49 H 0.118 0.882 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.755 14.024 -14.368 20.154 hybrid contribution 1.654 -0.756 -0.116 1.823 sum 3.410 13.268 -14.483 19.936 Atomic orbital electron populations 1.21880 0.95101 1.02460 1.01126 1.21124 0.96153 0.95799 0.98462 1.21821 1.00680 0.96222 1.01419 1.21954 1.00735 0.94730 0.98344 1.21423 1.01668 0.90915 0.82705 0.88868 1.21022 0.96434 0.86518 0.94365 1.42340 1.58856 1.00962 1.35451 1.19147 1.23261 0.89073 1.06137 0.91210 1.24750 1.00124 0.96934 0.98853 1.69651 1.40297 1.12526 1.35327 0.86274 0.78584 0.80015 0.81309 1.21223 1.21675 1.21276 1.45818 1.20085 1.56820 1.12903 1.20071 0.84735 0.81884 0.84652 1.90809 1.24582 1.42361 1.81252 1.21960 0.87853 1.05101 0.88341 1.46750 1.08005 1.42298 1.09854 1.23189 1.01658 1.09001 0.86397 1.20958 0.89834 1.05892 0.96510 1.19965 1.03993 0.94879 0.90009 1.23007 0.94315 1.03633 0.99906 1.22999 0.99559 0.94501 1.03305 1.75103 1.26339 1.15510 0.96549 1.78547 0.87292 1.17441 1.18924 0.92975 0.91968 0.93051 0.90371 0.92837 0.92873 0.93056 0.91814 0.91848 0.95851 0.94554 0.78056 0.93354 0.76003 0.85002 0.84631 0.79605 0.86121 0.88657 0.88037 0.88151 0.88649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.04 37.16 0.34 -1.62 16 2 C -0.10 -1.18 2.80 -90.63 -0.25 -1.44 16 3 C -0.14 -1.48 9.19 37.15 0.34 -1.14 16 4 C -0.12 -1.53 4.45 -26.73 -0.12 -1.65 16 5 C 0.14 2.13 2.08 -67.93 -0.14 1.99 16 6 H 0.09 1.72 5.68 -51.93 -0.30 1.42 16 7 C 0.14 2.63 5.49 -4.04 -0.02 2.61 16 8 N -0.73 -17.25 5.43 -59.90 -0.33 -17.57 16 9 C -0.25 -6.53 9.99 -15.06 -0.15 -6.68 16 10 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 11 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 12 N -0.93 -27.32 13.06 55.49 0.72 -26.59 16 13 Si 0.91 21.80 29.55 -169.99 -5.02 16.78 16 14 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 15 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 16 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 17 N -0.70 -9.84 4.49 -53.80 -0.24 -10.08 16 18 C 0.50 7.45 7.82 -10.99 -0.09 7.36 16 19 O -0.52 -9.83 15.35 5.56 0.09 -9.75 16 20 C 0.09 1.02 6.94 -5.20 -0.04 0.98 16 21 N -0.28 -3.83 3.20 -62.45 -0.20 -4.03 16 22 C -0.05 -0.60 10.89 -17.05 -0.19 -0.78 16 23 C 0.01 0.07 6.88 -82.78 -0.57 -0.50 16 24 C -0.07 -0.66 6.33 -91.77 -0.58 -1.24 16 25 C -0.17 -1.16 10.02 -26.73 -0.27 -1.42 16 26 C -0.17 -1.38 10.23 -26.73 -0.27 -1.65 16 27 N -0.27 -4.66 12.41 33.29 0.41 -4.25 16 28 N -0.04 -0.77 12.13 60.35 0.73 -0.04 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.94 6.30 -51.93 -0.33 0.61 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.08 1.01 6.47 -51.93 -0.34 0.67 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.02 0.41 8.14 -51.92 -0.42 -0.01 16 39 H 0.04 0.68 6.72 -51.93 -0.35 0.33 16 40 H 0.39 9.75 7.33 -40.82 -0.30 9.45 16 41 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 42 H 0.41 4.94 8.63 -40.82 -0.35 4.59 16 43 H 0.13 0.78 8.07 -51.93 -0.42 0.36 16 44 H 0.14 1.40 8.14 -51.93 -0.42 0.98 16 45 H 0.19 1.25 7.45 -52.49 -0.39 0.86 16 46 H 0.12 1.09 8.14 -51.93 -0.42 0.66 16 47 H 0.09 0.57 7.23 -51.93 -0.38 0.19 16 48 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 50 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 410.47 15.07 6.19 6.19 Total: -1.00 -35.51 410.47 -7.94 -43.45 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: -8.19 Total: 11.45 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: -2.10 Total: -5.55 kcal Atomic # 7 Polarization: -63.67 SS G_CDS: 1.10 Total: -62.57 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.09 Total: -9.75 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -35.51 -7.94 -43.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667093452.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.301 kcal (2) G-P(sol) polarization free energy of solvation -35.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds