Wall clock time and date at job start Tue Mar 31 2020 20:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52990 * 109.47426 * 2 1 4 4 C 1.52995 * 109.46980 * 239.99677 * 2 1 3 5 5 C 1.53004 * 109.47579 * 294.73615 * 4 2 1 6 6 H 1.08999 * 109.46857 * 54.17695 * 5 4 2 7 7 C 1.53008 * 109.46998 * 294.18356 * 5 4 2 8 8 N 1.46495 * 109.46849 * 184.99927 * 7 5 4 9 9 C 1.36946 * 119.99779 * 179.97438 * 8 7 5 10 10 H 1.08003 * 119.99839 * 359.97438 * 9 8 7 11 11 C 1.38804 * 120.00108 * 179.97438 * 9 8 7 12 12 N 1.31623 * 120.00044 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99968 * 179.97438 * 11 9 8 14 14 H 1.48495 * 109.47052 * 60.00443 * 13 11 9 15 15 H 1.48502 * 109.47051 * 180.02562 * 13 11 9 16 16 H 1.48495 * 109.47062 * 300.00160 * 13 11 9 17 17 N 1.46498 * 109.47538 * 174.17941 * 5 4 2 18 18 C 1.34773 * 120.00057 * 272.43792 * 17 5 4 19 19 O 1.21277 * 119.99920 * 4.94732 * 18 17 5 20 20 C 1.50701 * 120.00006 * 184.95125 * 18 17 5 21 21 N 1.46494 * 109.47426 * 179.97438 * 20 18 17 22 22 C 1.35316 * 125.87359 * 124.71154 * 21 20 18 23 23 C 1.35349 * 106.17732 * 179.90886 * 22 21 20 24 24 C 1.50697 * 126.74902 * 180.13019 * 23 22 21 25 25 C 1.52999 * 117.49973 * 343.86048 * 24 23 22 26 26 C 1.53000 * 60.00221 * 252.51402 * 25 24 23 27 27 N 1.33773 * 106.49431 * 0.35130 * 23 22 21 28 28 N 1.28634 * 108.88707 * 359.77686 * 27 23 22 29 29 H 1.09004 * 109.46366 * 56.34148 * 1 2 3 30 30 H 1.08994 * 109.47227 * 176.33825 * 1 2 3 31 31 H 1.08995 * 109.47064 * 296.34618 * 1 2 3 32 32 H 1.09003 * 109.46661 * 120.00264 * 2 1 3 33 33 H 1.09002 * 109.46992 * 59.99847 * 3 2 1 34 34 H 1.09002 * 109.47187 * 179.97438 * 3 2 1 35 35 H 1.09003 * 109.47417 * 299.99801 * 3 2 1 36 36 H 1.08993 * 109.47474 * 54.73686 * 4 2 1 37 37 H 1.09004 * 109.47213 * 174.73661 * 4 2 1 38 38 H 1.09009 * 109.46610 * 304.99567 * 7 5 4 39 39 H 1.08999 * 109.46902 * 64.99455 * 7 5 4 40 40 H 0.96989 * 120.00572 * 359.97438 * 8 7 5 41 41 H 0.97004 * 119.99865 * 179.97438 * 12 11 9 42 42 H 0.97001 * 119.99984 * 92.43429 * 17 5 4 43 43 H 1.08998 * 109.47076 * 300.00111 * 20 18 17 44 44 H 1.09000 * 109.47275 * 59.99555 * 20 18 17 45 45 H 1.07996 * 126.90410 * 0.02562 * 22 21 20 46 46 H 1.08995 * 115.55263 * 129.57662 * 24 23 22 47 47 H 1.09000 * 117.49614 * 0.02562 * 25 24 23 48 48 H 1.09001 * 117.49597 * 145.02390 * 25 24 23 49 49 H 1.08996 * 117.50027 * 252.50979 * 26 25 24 50 50 H 1.09002 * 117.51701 * 107.48120 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6409 -2.1970 -1.1848 6 1 0.5645 -2.2759 -1.0324 7 6 2.3714 -2.8726 -0.0224 8 7 2.0828 -4.3088 -0.0330 9 6 2.6314 -5.1245 0.9204 10 1 3.2772 -4.7090 1.6799 11 6 2.3576 -6.4852 0.9107 12 7 1.5710 -6.9916 -0.0152 13 14 3.1066 -7.5980 2.2108 14 1 2.6654 -7.1530 3.5570 15 1 2.6625 -8.9963 1.9810 16 1 4.5876 -7.5294 2.1274 17 7 2.0061 -2.8570 -2.4407 18 6 1.1461 -2.8541 -3.4783 19 8 0.1089 -2.2299 -3.4045 20 6 1.4732 -3.6266 -4.7302 21 7 0.3882 -3.4653 -5.7012 22 6 0.5204 -3.0160 -6.9707 23 6 -0.7225 -3.0282 -7.5064 24 6 -1.1055 -2.6183 -8.9051 25 6 -0.0932 -1.7927 -9.7015 26 6 -1.3623 -1.1317 -9.1602 27 7 -1.5446 -3.4711 -6.5485 28 7 -0.8557 -3.7212 -5.4914 29 1 -0.3632 0.5696 -0.8554 30 1 -0.3633 -1.0255 -0.0656 31 1 -0.3633 0.4560 0.9209 32 1 1.8933 -0.5139 0.8900 33 1 1.6767 1.9562 0.8900 34 1 3.1301 1.4423 0.0005 35 1 1.6768 1.9563 -0.8900 36 1 1.6018 -0.2649 -2.1367 37 1 3.1259 -0.6404 -1.2976 38 1 3.4451 -2.7169 -0.1284 39 1 2.0328 -2.4408 0.9195 40 1 1.5032 -4.6820 -0.7153 41 1 1.3800 -7.9426 -0.0222 42 1 2.8669 -3.2960 -2.5254 43 1 2.4025 -3.2496 -5.1574 44 1 1.5878 -4.6827 -4.4860 45 1 1.4342 -2.7110 -7.4588 46 1 -1.7144 -3.3358 -9.4551 47 1 0.8501 -1.5465 -9.2140 48 1 -0.0356 -1.9672 -10.7760 49 1 -2.1397 -0.8712 -9.8784 50 1 -1.2545 -0.4503 -8.3163 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667093452.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:30 Heat of formation + Delta-G solvation = 66.033780 kcal Electronic energy + Delta-G solvation = -29131.210063 eV Core-core repulsion = 25195.745614 eV Total energy + Delta-G solvation = -3935.464449 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -44.28567 -41.04414 -38.65975 -38.11428 -36.37183 -35.43052 -35.18962 -33.03417 -31.69504 -31.03490 -29.17777 -28.05541 -27.22067 -25.02832 -24.69758 -23.95626 -23.18134 -22.41776 -21.78804 -21.19256 -20.63179 -19.25702 -18.59692 -18.53178 -17.28753 -17.02727 -16.79120 -16.34198 -16.26408 -15.97696 -15.65201 -15.40483 -15.26182 -15.06335 -14.96583 -14.57924 -14.26102 -13.83588 -13.75189 -13.39219 -13.30451 -13.17417 -12.95846 -12.73792 -12.66821 -12.53079 -12.28394 -12.28150 -12.17459 -12.05469 -11.93675 -11.78741 -11.72823 -11.58673 -11.42435 -11.31534 -11.18723 -10.96041 -10.74878 -10.05614 -9.98270 -9.00455 -7.94190 -5.23576 0.59131 1.23784 1.45014 1.48231 1.50288 1.50608 1.56581 2.16386 2.56005 2.88979 3.28042 3.40017 3.51413 3.70541 3.73195 3.88539 3.91900 4.00213 4.03915 4.04486 4.07606 4.15746 4.17625 4.28648 4.39905 4.42247 4.55438 4.73966 4.78255 4.80102 4.86465 4.89327 4.92803 4.97921 4.99054 5.02152 5.10083 5.13017 5.20925 5.23862 5.31549 5.33111 5.44530 5.46107 5.51655 5.53524 5.57291 6.26036 6.46007 7.13156 7.33971 7.53585 8.07541 8.30793 9.28261 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.009528 B = 0.003013 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2937.906214 B = 9291.532703 C =11620.251627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 C -0.138 4.138 4 C -0.105 4.105 5 C 0.147 3.853 6 H 0.058 0.942 7 C 0.147 3.853 8 N -0.742 5.742 9 C -0.242 4.242 10 H 0.079 0.921 11 C -0.072 4.072 12 N -0.967 5.967 13 Si 0.970 3.030 14 H -0.282 1.282 15 H -0.301 1.301 16 H -0.273 1.273 17 N -0.698 5.698 18 C 0.500 3.500 19 O -0.565 6.565 20 C 0.094 3.906 21 N -0.277 5.277 22 C -0.032 4.032 23 C -0.010 4.010 24 C -0.093 4.093 25 C -0.139 4.139 26 C -0.174 4.174 27 N -0.312 5.312 28 N -0.108 5.108 29 H 0.048 0.952 30 H 0.033 0.967 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.052 0.948 36 H 0.056 0.944 37 H 0.085 0.915 38 H 0.045 0.955 39 H 0.035 0.965 40 H 0.373 0.627 41 H 0.249 0.751 42 H 0.416 0.584 43 H 0.194 0.806 44 H 0.142 0.858 45 H 0.240 0.760 46 H 0.120 0.880 47 H 0.110 0.890 48 H 0.124 0.876 49 H 0.113 0.887 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.835 15.759 -16.818 24.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.115 4.115 3 C -0.196 4.196 4 C -0.144 4.144 5 C 0.042 3.958 6 H 0.076 0.924 7 C 0.021 3.979 8 N -0.385 5.385 9 C -0.374 4.374 10 H 0.097 0.903 11 C -0.265 4.265 12 N -0.618 5.618 13 Si 0.800 3.200 14 H -0.209 1.209 15 H -0.227 1.227 16 H -0.199 1.199 17 N -0.349 5.349 18 C 0.285 3.715 19 O -0.443 6.443 20 C -0.030 4.030 21 N -0.070 5.070 22 C -0.182 4.182 23 C -0.149 4.149 24 C -0.113 4.113 25 C -0.176 4.176 26 C -0.211 4.211 27 N -0.177 5.177 28 N -0.086 5.086 29 H 0.067 0.933 30 H 0.052 0.948 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.104 0.896 38 H 0.062 0.938 39 H 0.053 0.947 40 H 0.205 0.795 41 H 0.058 0.942 42 H 0.253 0.747 43 H 0.211 0.789 44 H 0.160 0.840 45 H 0.256 0.744 46 H 0.138 0.862 47 H 0.128 0.872 48 H 0.143 0.857 49 H 0.131 0.869 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.173 15.634 -15.509 22.621 hybrid contribution 0.603 -1.150 0.236 1.320 sum 5.776 14.484 -15.274 21.828 Atomic orbital electron populations 1.21855 0.96246 1.00666 1.01608 1.21138 0.95173 0.97354 0.97875 1.21769 1.01464 0.94378 1.01957 1.21845 1.01916 0.92302 0.98332 1.21166 0.99275 0.92683 0.82698 0.92418 1.21149 0.97638 0.83725 0.95415 1.42516 1.58452 1.02970 1.34592 1.19568 1.22136 0.89503 1.06161 0.90305 1.25516 1.01345 0.98555 1.01063 1.69817 1.42412 1.12163 1.37409 0.85265 0.78359 0.77524 0.78902 1.20886 1.22721 1.19863 1.45729 1.20479 1.56533 1.12203 1.20717 0.83785 0.81298 0.85721 1.90796 1.26553 1.44625 1.82325 1.22272 0.89087 1.05003 0.86630 1.46988 1.07387 1.41524 1.11083 1.24006 1.02819 1.06273 0.85114 1.21651 0.90269 1.05594 0.97337 1.20080 1.06706 0.95633 0.88884 1.23169 0.93753 0.99885 1.00829 1.23043 1.01618 0.93143 1.03346 1.75010 1.28173 1.16884 0.97671 1.78481 0.89398 1.20687 1.20067 0.93303 0.94795 0.91826 0.90812 0.92023 0.91532 0.92868 0.92526 0.89605 0.93763 0.94702 0.79452 0.94204 0.74696 0.78912 0.84044 0.74381 0.86188 0.87157 0.85749 0.86890 0.90266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.92 9.04 71.98 0.65 -3.27 16 2 C -0.10 -2.26 2.80 -10.80 -0.03 -2.29 16 3 C -0.14 -2.52 9.19 71.98 0.66 -1.86 16 4 C -0.11 -2.57 4.45 30.59 0.14 -2.44 16 5 C 0.15 4.57 2.08 45.00 0.09 4.66 16 6 H 0.06 2.25 5.68 -2.39 -0.01 2.24 16 7 C 0.15 5.25 5.49 86.38 0.47 5.72 16 8 N -0.74 -35.10 5.43 -343.44 -1.87 -36.96 16 9 C -0.24 -12.76 9.99 84.03 0.84 -11.92 16 10 H 0.08 3.95 7.83 -2.91 -0.02 3.92 16 11 C -0.07 -4.01 5.50 84.86 0.47 -3.55 16 12 N -0.97 -57.97 13.06 21.65 0.28 -57.68 16 13 Si 0.97 44.85 29.55 68.60 2.03 46.88 16 14 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 15 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 16 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 17 N -0.70 -19.04 4.49 -442.53 -1.99 -21.03 16 18 C 0.50 14.75 7.82 87.66 0.69 15.44 16 19 O -0.56 -22.49 15.35 -3.02 -0.05 -22.54 16 20 C 0.09 1.90 6.94 85.63 0.59 2.49 16 21 N -0.28 -7.51 3.20 -351.48 -1.12 -8.63 16 22 C -0.03 -0.65 10.89 83.49 0.91 0.26 16 23 C -0.01 -0.26 6.88 41.59 0.29 0.02 16 24 C -0.09 -1.71 6.33 -11.54 -0.07 -1.78 16 25 C -0.14 -1.42 10.02 30.59 0.31 -1.11 16 26 C -0.17 -2.66 10.23 30.60 0.31 -2.35 16 27 N -0.31 -11.39 12.41 -48.60 -0.60 -11.99 16 28 N -0.11 -4.09 12.13 37.02 0.45 -3.65 16 29 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.03 1.08 6.30 -2.39 -0.02 1.07 16 31 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.07 1.81 6.47 -2.39 -0.02 1.79 16 33 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 38 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 39 H 0.04 1.28 6.72 -2.39 -0.02 1.27 16 40 H 0.37 19.34 7.33 -92.72 -0.68 18.66 16 41 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 42 H 0.42 9.44 8.63 -92.71 -0.80 8.64 16 43 H 0.19 1.40 8.07 -2.39 -0.02 1.38 16 44 H 0.14 2.76 8.14 -2.39 -0.02 2.74 16 45 H 0.24 1.96 7.45 -2.91 -0.02 1.94 16 46 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 47 H 0.11 0.80 7.23 -2.39 -0.02 0.78 16 48 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 49 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 50 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -82.91 410.47 2.92 -79.98 By element: Atomic # 1 Polarization: 38.11 SS G_CDS: -0.52 Total: 37.59 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: 6.31 Total: -1.97 kcal Atomic # 7 Polarization: -135.09 SS G_CDS: -4.85 Total: -139.94 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: -0.05 Total: -22.54 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -82.91 2.92 -79.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667093452.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.018 kcal (2) G-P(sol) polarization free energy of solvation -82.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds