Wall clock time and date at job start Tue Mar 31 2020 20:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53009 * 109.46861 * 2 1 4 4 C 1.52994 * 109.47406 * 119.99932 * 2 1 3 5 5 C 1.53007 * 109.46802 * 66.11501 * 4 2 1 6 6 H 1.08997 * 109.46858 * 304.06693 * 5 4 2 7 7 C 1.52996 * 109.47114 * 64.07103 * 5 4 2 8 8 N 1.46502 * 109.47053 * 175.00162 * 7 5 4 9 9 C 1.36934 * 119.99565 * 179.97438 * 8 7 5 10 10 H 1.08004 * 120.00789 * 359.97438 * 9 8 7 11 11 C 1.38812 * 119.99650 * 179.97438 * 9 8 7 12 12 N 1.31623 * 120.00167 * 180.02562 * 11 9 8 13 13 Si 1.86806 * 120.00075 * 359.97438 * 11 9 8 14 14 H 1.48495 * 109.46750 * 90.00200 * 13 11 9 15 15 H 1.48500 * 109.46882 * 210.00295 * 13 11 9 16 16 H 1.48498 * 109.46839 * 330.00081 * 13 11 9 17 17 N 1.46508 * 109.47016 * 184.06947 * 5 4 2 18 18 C 1.34774 * 120.00124 * 88.01604 * 17 5 4 19 19 O 1.21286 * 119.99839 * 354.77131 * 18 17 5 20 20 C 1.50696 * 119.99826 * 174.77019 * 18 17 5 21 21 N 1.46501 * 109.47120 * 179.97438 * 20 18 17 22 22 C 1.35315 * 125.86626 * 125.29195 * 21 20 18 23 23 C 1.35355 * 106.17394 * 180.18757 * 22 21 20 24 24 C 1.50696 * 126.74866 * 179.85456 * 23 22 21 25 25 C 1.53001 * 117.50252 * 16.09396 * 24 23 22 26 26 C 1.52997 * 117.49937 * 84.71670 * 24 23 22 27 27 N 1.33777 * 106.49383 * 359.59651 * 23 22 21 28 28 N 1.28627 * 108.88555 * 0.25888 * 27 23 22 29 29 H 1.09008 * 109.47063 * 303.63545 * 1 2 3 30 30 H 1.08992 * 109.47287 * 63.63186 * 1 2 3 31 31 H 1.09001 * 109.47192 * 183.63856 * 1 2 3 32 32 H 1.08996 * 109.47015 * 240.00195 * 2 1 3 33 33 H 1.08999 * 109.46717 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47236 * 300.00336 * 3 2 1 35 35 H 1.09001 * 109.46950 * 60.00695 * 3 2 1 36 36 H 1.09003 * 109.47496 * 306.11893 * 4 2 1 37 37 H 1.08991 * 109.47536 * 186.11453 * 4 2 1 38 38 H 1.09010 * 109.46546 * 294.99787 * 7 5 4 39 39 H 1.09001 * 109.47430 * 54.99566 * 7 5 4 40 40 H 0.96995 * 119.99972 * 359.97438 * 8 7 5 41 41 H 0.96995 * 119.99975 * 180.02562 * 12 11 9 42 42 H 0.97000 * 119.99235 * 268.01964 * 17 5 4 43 43 H 1.09001 * 109.47205 * 60.00364 * 20 18 17 44 44 H 1.08998 * 109.47427 * 300.00187 * 20 18 17 45 45 H 1.08003 * 126.91684 * 0.04957 * 22 21 20 46 46 H 1.09005 * 115.55863 * 230.40037 * 24 23 22 47 47 H 1.09000 * 117.49657 * 214.97794 * 25 24 23 48 48 H 1.08994 * 117.49728 * 359.97438 * 25 24 23 49 49 H 1.09006 * 117.50086 * 359.97438 * 26 24 23 50 50 H 1.09009 * 117.49891 * 144.99086 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6594 -2.2013 1.1747 6 1 0.5810 -2.2929 1.0456 7 6 2.3723 -2.8521 -0.0123 8 7 2.1032 -4.2922 -0.0138 9 6 2.6402 -5.0880 -0.9902 10 1 3.2617 -4.6541 -1.7596 11 6 2.3857 -6.4526 -0.9913 12 7 2.9022 -7.2177 -1.9296 13 14 1.3112 -7.2034 0.3397 14 1 -0.1063 -7.1904 -0.1027 15 1 1.7389 -8.6033 0.5899 16 1 1.4470 -6.4133 1.5896 17 7 2.0618 -2.8720 2.4135 18 6 1.2219 -2.9018 3.4671 19 8 0.1734 -2.2937 3.4242 20 6 1.5855 -3.6907 4.6985 21 7 0.5173 -3.5637 5.6930 22 6 -0.1399 -4.5874 6.2856 23 6 -1.0391 -4.0225 7.1250 24 6 -2.0181 -4.7434 8.0153 25 6 -1.7736 -6.2312 8.2754 26 6 -1.5180 -5.2086 9.3843 27 7 -0.8838 -2.6985 7.0128 28 7 0.0459 -2.4594 6.1567 29 1 -0.3633 0.5693 0.8557 30 1 -0.3633 0.4564 -0.9207 31 1 -0.3633 -1.0256 0.0652 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4426 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6767 1.9564 0.8901 36 1 1.5901 -0.2745 2.1359 37 1 3.1245 -0.6274 1.3056 38 1 2.0068 -2.4132 -0.9408 39 1 3.4459 -2.6831 0.0714 40 1 1.5447 -4.6819 0.6769 41 1 2.7240 -8.1711 -1.9305 42 1 2.9327 -3.2945 2.4753 43 1 2.5165 -3.3059 5.1147 44 1 1.7126 -4.7403 4.4332 45 1 0.0192 -5.6428 6.1204 46 1 -3.0530 -4.4082 7.9448 47 1 -2.6475 -6.8748 8.3760 48 1 -0.9048 -6.6886 7.8022 49 1 -0.4806 -4.9935 9.6409 50 1 -2.2237 -5.1790 10.2147 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667093453.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:36 Heat of formation + Delta-G solvation = 94.081995 kcal Electronic energy + Delta-G solvation = -29266.893171 eV Core-core repulsion = 25332.644984 eV Total energy + Delta-G solvation = -3934.248187 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.38662 -40.00331 -37.69336 -37.38027 -35.08863 -34.52250 -33.80816 -31.52743 -30.84315 -30.02495 -28.29417 -27.09885 -25.89062 -24.27561 -23.30518 -22.69342 -22.11063 -21.42672 -20.88565 -20.33641 -19.60611 -18.14169 -17.65816 -17.39880 -16.25054 -16.00955 -15.84923 -15.41917 -15.11614 -14.83029 -14.66917 -14.51759 -14.02053 -13.96747 -13.74105 -13.20752 -13.00149 -12.88201 -12.58442 -12.49177 -12.30316 -12.13289 -11.87793 -11.86229 -11.68793 -11.43097 -11.32985 -11.06581 -11.02899 -10.91626 -10.88773 -10.63559 -10.54749 -10.44546 -10.35795 -10.19524 -9.78102 -9.73302 -9.15065 -9.07981 -8.97753 -7.39174 -5.89904 -3.26650 1.43834 2.00628 2.39459 2.41954 3.05544 3.17647 3.27334 3.32817 3.50886 3.98550 4.29633 4.44786 4.44987 4.57241 4.58334 4.60141 4.66020 4.81045 4.92854 4.98003 5.01052 5.13859 5.21281 5.30200 5.32633 5.39347 5.52535 5.57856 5.59670 5.67286 5.69440 5.77556 5.79039 5.83759 5.86616 5.96080 6.00046 6.00351 6.07644 6.20068 6.23527 6.34033 6.37125 6.45007 6.52173 6.66929 7.40403 7.84836 8.06474 8.28598 8.45777 9.06398 9.78342 9.97486 11.28322 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.008268 B = 0.003640 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3385.884938 B = 7690.810237 C =10535.636801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.097 4.097 3 C -0.144 4.144 4 C -0.119 4.119 5 C 0.134 3.866 6 H 0.092 0.908 7 C 0.148 3.852 8 N -0.755 5.755 9 C -0.247 4.247 10 H 0.092 0.908 11 C 0.007 3.993 12 N -0.931 5.931 13 Si 0.885 3.115 14 H -0.284 1.284 15 H -0.290 1.290 16 H -0.282 1.282 17 N -0.709 5.709 18 C 0.501 3.499 19 O -0.512 6.512 20 C 0.092 3.908 21 N -0.278 5.278 22 C -0.048 4.048 23 C 0.008 3.992 24 C -0.070 4.070 25 C -0.171 4.171 26 C -0.165 4.165 27 N -0.266 5.266 28 N -0.051 5.051 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.079 0.921 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.051 0.949 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.047 0.953 39 H 0.034 0.966 40 H 0.361 0.639 41 H 0.261 0.739 42 H 0.406 0.594 43 H 0.130 0.870 44 H 0.137 0.863 45 H 0.189 0.811 46 H 0.122 0.878 47 H 0.102 0.898 48 H 0.096 0.904 49 H 0.094 0.906 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.722 7.297 17.106 18.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.116 4.116 3 C -0.202 4.202 4 C -0.158 4.158 5 C 0.030 3.970 6 H 0.110 0.890 7 C 0.021 3.979 8 N -0.401 5.401 9 C -0.377 4.377 10 H 0.109 0.891 11 C -0.189 4.189 12 N -0.578 5.578 13 Si 0.716 3.284 14 H -0.211 1.211 15 H -0.216 1.216 16 H -0.209 1.209 17 N -0.361 5.361 18 C 0.284 3.716 19 O -0.386 6.386 20 C -0.033 4.033 21 N -0.072 5.072 22 C -0.197 4.197 23 C -0.129 4.129 24 C -0.090 4.090 25 C -0.208 4.208 26 C -0.203 4.203 27 N -0.133 5.133 28 N -0.031 5.031 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.098 0.902 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.065 0.935 39 H 0.052 0.948 40 H 0.193 0.807 41 H 0.071 0.929 42 H 0.241 0.759 43 H 0.147 0.853 44 H 0.155 0.845 45 H 0.206 0.794 46 H 0.139 0.861 47 H 0.121 0.879 48 H 0.114 0.886 49 H 0.113 0.887 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.246 9.200 16.764 19.396 hybrid contribution -0.205 -2.201 0.677 2.312 sum -3.451 6.999 17.442 19.108 Atomic orbital electron populations 1.21880 0.95180 1.02218 1.01286 1.21146 0.96088 0.95998 0.98404 1.21821 1.00775 0.96086 1.01495 1.21956 1.01067 0.94213 0.98610 1.21485 1.01273 0.91400 0.82872 0.88979 1.21029 0.97294 0.85122 0.94483 1.42687 1.61534 1.02744 1.33111 1.19042 1.25089 0.89220 1.04314 0.89056 1.24672 1.00100 0.96086 0.98049 1.69692 1.48502 1.05037 1.34584 0.86565 0.81201 0.78628 0.82018 1.21060 1.21609 1.20905 1.45906 1.19740 1.57315 1.13175 1.20115 0.85147 0.82063 0.84296 1.90824 1.24014 1.42899 1.80869 1.21955 0.89334 1.04792 0.87239 1.46700 1.26582 1.05274 1.28598 1.23279 0.99360 0.96094 1.01005 1.20953 0.99820 0.90724 1.01413 1.19980 0.97392 0.95238 0.96384 1.23027 1.03835 0.91132 1.02830 1.22994 1.02628 1.02869 0.91789 1.75063 1.11317 1.14350 1.12601 1.78422 1.08068 1.08693 1.07877 0.92866 0.92952 0.92256 0.90248 0.92787 0.92784 0.92972 0.91434 0.91609 0.93539 0.94836 0.80654 0.92928 0.75909 0.85255 0.84522 0.79419 0.86053 0.87927 0.88555 0.88729 0.88130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.05 37.16 0.34 -1.52 16 2 C -0.10 -1.15 2.78 -90.62 -0.25 -1.41 16 3 C -0.14 -1.47 9.19 37.16 0.34 -1.13 16 4 C -0.12 -1.48 4.47 -26.73 -0.12 -1.60 16 5 C 0.13 1.94 2.08 -67.92 -0.14 1.79 16 6 H 0.09 1.54 5.78 -51.93 -0.30 1.24 16 7 C 0.15 2.53 5.45 -4.04 -0.02 2.50 16 8 N -0.75 -16.30 5.24 -59.90 -0.31 -16.61 16 9 C -0.25 -6.54 10.47 -15.06 -0.16 -6.70 16 10 H 0.09 2.61 8.06 -52.48 -0.42 2.18 16 11 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 12 N -0.93 -28.07 13.97 55.49 0.78 -27.29 16 13 Si 0.89 20.94 27.74 -169.99 -4.71 16.22 16 14 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 15 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 16 H -0.28 -6.00 6.52 56.52 0.37 -5.64 16 17 N -0.71 -9.16 4.49 -53.80 -0.24 -9.40 16 18 C 0.50 6.91 7.82 -10.99 -0.09 6.82 16 19 O -0.51 -9.24 15.34 5.55 0.09 -9.16 16 20 C 0.09 0.93 6.94 -5.20 -0.04 0.89 16 21 N -0.28 -3.63 3.20 -62.44 -0.20 -3.83 16 22 C -0.05 -0.55 10.89 -17.04 -0.19 -0.73 16 23 C 0.01 0.10 6.88 -82.77 -0.57 -0.47 16 24 C -0.07 -0.68 6.33 -91.78 -0.58 -1.26 16 25 C -0.17 -1.21 10.02 -26.73 -0.27 -1.48 16 26 C -0.17 -1.27 10.23 -26.73 -0.27 -1.54 16 27 N -0.27 -4.30 12.41 33.29 0.41 -3.89 16 28 N -0.05 -0.83 12.13 60.35 0.73 -0.10 16 29 H 0.05 0.67 8.14 -51.92 -0.42 0.24 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.83 6.37 -51.93 -0.33 0.50 16 32 H 0.08 0.98 6.37 -51.93 -0.33 0.65 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.05 0.82 6.66 -51.92 -0.35 0.47 16 39 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.36 7.73 5.20 -40.82 -0.21 7.51 16 41 H 0.26 7.49 8.31 -40.82 -0.34 7.16 16 42 H 0.41 4.45 8.64 -40.82 -0.35 4.10 16 43 H 0.13 0.88 8.14 -51.93 -0.42 0.45 16 44 H 0.14 1.01 8.07 -51.93 -0.42 0.59 16 45 H 0.19 1.46 7.45 -52.48 -0.39 1.07 16 46 H 0.12 1.13 8.14 -51.93 -0.42 0.71 16 47 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.10 0.62 7.22 -51.93 -0.38 0.24 16 49 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 50 H 0.10 0.63 8.14 -51.92 -0.42 0.20 16 LS Contribution 407.32 15.07 6.14 6.14 Total: -1.00 -35.47 407.32 -7.58 -43.05 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: -8.14 Total: 10.58 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: -2.11 Total: -5.72 kcal Atomic # 7 Polarization: -62.29 SS G_CDS: 1.17 Total: -61.12 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: 0.09 Total: -9.16 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.71 Total: 16.22 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -35.47 -7.58 -43.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667093453.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.133 kcal (2) G-P(sol) polarization free energy of solvation -35.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds