Wall clock time and date at job start Tue Mar 31 2020 20:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53009 * 109.46861 * 2 1 4 4 C 1.52994 * 109.47406 * 119.99932 * 2 1 3 5 5 C 1.53007 * 109.46802 * 66.11501 * 4 2 1 6 6 H 1.08997 * 109.46858 * 304.06693 * 5 4 2 7 7 C 1.52996 * 109.47114 * 64.07103 * 5 4 2 8 8 N 1.46502 * 109.47053 * 175.00162 * 7 5 4 9 9 C 1.36934 * 119.99565 * 179.97438 * 8 7 5 10 10 H 1.08004 * 120.00789 * 359.97438 * 9 8 7 11 11 C 1.38812 * 119.99650 * 179.97438 * 9 8 7 12 12 N 1.31623 * 120.00167 * 180.02562 * 11 9 8 13 13 Si 1.86806 * 120.00075 * 359.97438 * 11 9 8 14 14 H 1.48495 * 109.46750 * 90.00200 * 13 11 9 15 15 H 1.48500 * 109.46882 * 210.00295 * 13 11 9 16 16 H 1.48498 * 109.46839 * 330.00081 * 13 11 9 17 17 N 1.46508 * 109.47016 * 184.06947 * 5 4 2 18 18 C 1.34774 * 120.00124 * 88.01604 * 17 5 4 19 19 O 1.21286 * 119.99839 * 354.77131 * 18 17 5 20 20 C 1.50696 * 119.99826 * 174.77019 * 18 17 5 21 21 N 1.46501 * 109.47120 * 179.97438 * 20 18 17 22 22 C 1.35315 * 125.86626 * 125.29195 * 21 20 18 23 23 C 1.35355 * 106.17394 * 180.18757 * 22 21 20 24 24 C 1.50696 * 126.74866 * 179.85456 * 23 22 21 25 25 C 1.53001 * 117.50252 * 16.09396 * 24 23 22 26 26 C 1.52997 * 117.49937 * 84.71670 * 24 23 22 27 27 N 1.33777 * 106.49383 * 359.59651 * 23 22 21 28 28 N 1.28627 * 108.88555 * 0.25888 * 27 23 22 29 29 H 1.09008 * 109.47063 * 303.63545 * 1 2 3 30 30 H 1.08992 * 109.47287 * 63.63186 * 1 2 3 31 31 H 1.09001 * 109.47192 * 183.63856 * 1 2 3 32 32 H 1.08996 * 109.47015 * 240.00195 * 2 1 3 33 33 H 1.08999 * 109.46717 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47236 * 300.00336 * 3 2 1 35 35 H 1.09001 * 109.46950 * 60.00695 * 3 2 1 36 36 H 1.09003 * 109.47496 * 306.11893 * 4 2 1 37 37 H 1.08991 * 109.47536 * 186.11453 * 4 2 1 38 38 H 1.09010 * 109.46546 * 294.99787 * 7 5 4 39 39 H 1.09001 * 109.47430 * 54.99566 * 7 5 4 40 40 H 0.96995 * 119.99972 * 359.97438 * 8 7 5 41 41 H 0.96995 * 119.99975 * 180.02562 * 12 11 9 42 42 H 0.97000 * 119.99235 * 268.01964 * 17 5 4 43 43 H 1.09001 * 109.47205 * 60.00364 * 20 18 17 44 44 H 1.08998 * 109.47427 * 300.00187 * 20 18 17 45 45 H 1.08003 * 126.91684 * 0.04957 * 22 21 20 46 46 H 1.09005 * 115.55863 * 230.40037 * 24 23 22 47 47 H 1.09000 * 117.49657 * 214.97794 * 25 24 23 48 48 H 1.08994 * 117.49728 * 359.97438 * 25 24 23 49 49 H 1.09006 * 117.50086 * 359.97438 * 26 24 23 50 50 H 1.09009 * 117.49891 * 144.99086 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6594 -2.2013 1.1747 6 1 0.5810 -2.2929 1.0456 7 6 2.3723 -2.8521 -0.0123 8 7 2.1032 -4.2922 -0.0138 9 6 2.6402 -5.0880 -0.9902 10 1 3.2617 -4.6541 -1.7596 11 6 2.3857 -6.4526 -0.9913 12 7 2.9022 -7.2177 -1.9296 13 14 1.3112 -7.2034 0.3397 14 1 -0.1063 -7.1904 -0.1027 15 1 1.7389 -8.6033 0.5899 16 1 1.4470 -6.4133 1.5896 17 7 2.0618 -2.8720 2.4135 18 6 1.2219 -2.9018 3.4671 19 8 0.1734 -2.2937 3.4242 20 6 1.5855 -3.6907 4.6985 21 7 0.5173 -3.5637 5.6930 22 6 -0.1399 -4.5874 6.2856 23 6 -1.0391 -4.0225 7.1250 24 6 -2.0181 -4.7434 8.0153 25 6 -1.7736 -6.2312 8.2754 26 6 -1.5180 -5.2086 9.3843 27 7 -0.8838 -2.6985 7.0128 28 7 0.0459 -2.4594 6.1567 29 1 -0.3633 0.5693 0.8557 30 1 -0.3633 0.4564 -0.9207 31 1 -0.3633 -1.0256 0.0652 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4426 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6767 1.9564 0.8901 36 1 1.5901 -0.2745 2.1359 37 1 3.1245 -0.6274 1.3056 38 1 2.0068 -2.4132 -0.9408 39 1 3.4459 -2.6831 0.0714 40 1 1.5447 -4.6819 0.6769 41 1 2.7240 -8.1711 -1.9305 42 1 2.9327 -3.2945 2.4753 43 1 2.5165 -3.3059 5.1147 44 1 1.7126 -4.7403 4.4332 45 1 0.0192 -5.6428 6.1204 46 1 -3.0530 -4.4082 7.9448 47 1 -2.6475 -6.8748 8.3760 48 1 -0.9048 -6.6886 7.8022 49 1 -0.4806 -4.9935 9.6409 50 1 -2.2237 -5.1790 10.2147 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667093453.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:34 Heat of formation + Delta-G solvation = 69.412431 kcal Electronic energy + Delta-G solvation = -29267.962924 eV Core-core repulsion = 25332.644984 eV Total energy + Delta-G solvation = -3935.317940 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -44.32541 -41.11680 -38.73318 -38.14448 -36.48313 -35.47231 -35.24702 -33.34864 -31.73417 -31.29756 -29.26706 -28.04987 -27.39044 -25.06911 -24.47698 -23.86408 -23.20418 -22.47947 -21.82968 -21.26327 -20.73493 -19.74031 -18.67743 -18.55050 -17.26106 -17.10263 -16.76880 -16.60033 -16.17283 -16.09209 -15.69494 -15.47389 -15.34388 -14.99823 -14.89025 -14.62929 -14.38562 -13.96566 -13.87681 -13.72279 -13.27522 -13.26269 -13.04168 -12.87663 -12.65933 -12.59714 -12.32516 -12.21831 -12.15660 -12.05833 -11.95235 -11.86615 -11.80868 -11.59485 -11.43340 -11.34439 -11.18663 -11.03394 -10.79853 -10.13113 -10.00954 -9.31653 -8.02177 -5.36562 0.52512 1.18911 1.31020 1.38728 1.41384 1.45780 1.46920 2.06740 2.47468 2.87441 3.21055 3.30000 3.42345 3.53462 3.70156 3.82855 3.87490 3.95597 3.97214 3.99756 4.03948 4.06239 4.12733 4.28030 4.33880 4.37791 4.50232 4.73291 4.74711 4.78075 4.83494 4.87138 4.91947 4.96218 4.96644 5.01204 5.08671 5.09284 5.17549 5.21216 5.29032 5.32279 5.40803 5.44516 5.50004 5.53409 5.76605 6.20523 6.39482 7.05833 7.07222 7.47819 7.80902 8.00277 9.19099 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.008268 B = 0.003640 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3385.884938 B = 7690.810237 C =10535.636801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.098 4.098 3 C -0.140 4.140 4 C -0.108 4.108 5 C 0.145 3.855 6 H 0.069 0.931 7 C 0.150 3.850 8 N -0.754 5.754 9 C -0.231 4.231 10 H 0.060 0.940 11 C -0.061 4.061 12 N -0.983 5.983 13 Si 0.950 3.050 14 H -0.294 1.294 15 H -0.293 1.293 16 H -0.240 1.240 17 N -0.703 5.703 18 C 0.499 3.501 19 O -0.561 6.561 20 C 0.091 3.909 21 N -0.278 5.278 22 C -0.040 4.040 23 C -0.004 4.004 24 C -0.097 4.097 25 C -0.150 4.150 26 C -0.161 4.161 27 N -0.307 5.307 28 N -0.095 5.095 29 H 0.048 0.952 30 H 0.062 0.938 31 H 0.039 0.961 32 H 0.075 0.925 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.052 0.948 36 H 0.057 0.943 37 H 0.083 0.917 38 H 0.042 0.958 39 H 0.047 0.953 40 H 0.364 0.636 41 H 0.257 0.743 42 H 0.418 0.582 43 H 0.166 0.834 44 H 0.174 0.826 45 H 0.229 0.771 46 H 0.116 0.884 47 H 0.118 0.882 48 H 0.108 0.892 49 H 0.089 0.911 50 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.208 6.526 19.126 20.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 C -0.198 4.198 4 C -0.147 4.147 5 C 0.040 3.960 6 H 0.087 0.913 7 C 0.024 3.976 8 N -0.400 5.400 9 C -0.362 4.362 10 H 0.078 0.922 11 C -0.253 4.253 12 N -0.633 5.633 13 Si 0.777 3.223 14 H -0.221 1.221 15 H -0.219 1.219 16 H -0.164 1.164 17 N -0.356 5.356 18 C 0.284 3.716 19 O -0.438 6.438 20 C -0.033 4.033 21 N -0.072 5.072 22 C -0.190 4.190 23 C -0.142 4.142 24 C -0.117 4.117 25 C -0.187 4.187 26 C -0.199 4.199 27 N -0.173 5.173 28 N -0.074 5.074 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.058 0.942 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.101 0.899 38 H 0.060 0.940 39 H 0.065 0.935 40 H 0.198 0.802 41 H 0.066 0.934 42 H 0.256 0.744 43 H 0.183 0.817 44 H 0.191 0.809 45 H 0.246 0.754 46 H 0.134 0.866 47 H 0.136 0.864 48 H 0.127 0.873 49 H 0.108 0.892 50 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -2.697 8.493 18.817 20.820 hybrid contribution -0.348 -1.897 -0.038 1.929 sum -3.044 6.596 18.779 20.135 Atomic orbital electron populations 1.21858 0.95908 1.00956 1.01652 1.21159 0.95472 0.97201 0.97861 1.21782 1.01368 0.94679 1.01926 1.21861 1.01963 0.92535 0.98385 1.21203 0.99519 0.92554 0.82703 0.91309 1.21135 0.98232 0.82689 0.95593 1.42628 1.61183 1.04153 1.32019 1.19003 1.23440 0.89653 1.04065 0.92198 1.25472 1.02273 0.96744 1.00818 1.69877 1.50995 1.05171 1.37280 0.85499 0.78077 0.77891 0.80814 1.22146 1.21942 1.16353 1.45823 1.20234 1.57031 1.12466 1.20740 0.84223 0.81532 0.85154 1.90818 1.26123 1.45014 1.81860 1.22320 0.89673 1.06339 0.84991 1.46953 1.26725 1.04976 1.28502 1.23935 0.98039 0.97401 0.99619 1.21533 1.00672 0.89907 1.02131 1.20071 0.96624 0.97290 0.97677 1.23165 1.04760 0.89616 1.01198 1.23053 1.02575 1.02693 0.91560 1.74991 1.12181 1.16611 1.13549 1.78348 1.09361 1.10386 1.09257 0.93269 0.91901 0.94209 0.90706 0.91792 0.92023 0.92924 0.92453 0.89890 0.93997 0.93474 0.80233 0.93371 0.74438 0.81701 0.80853 0.75445 0.86610 0.86366 0.87349 0.89228 0.86871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.64 9.05 71.98 0.65 -2.99 16 2 C -0.10 -2.22 2.78 -10.79 -0.03 -2.25 16 3 C -0.14 -2.61 9.19 71.99 0.66 -1.95 16 4 C -0.11 -2.55 4.47 30.59 0.14 -2.41 16 5 C 0.15 4.01 2.08 44.99 0.09 4.10 16 6 H 0.07 2.29 5.78 -2.39 -0.01 2.27 16 7 C 0.15 4.89 5.45 86.38 0.47 5.37 16 8 N -0.75 -31.34 5.24 -343.44 -1.80 -33.14 16 9 C -0.23 -12.17 10.47 84.03 0.88 -11.29 16 10 H 0.06 3.49 8.06 -2.91 -0.02 3.46 16 11 C -0.06 -3.41 5.50 84.86 0.47 -2.94 16 12 N -0.98 -60.27 13.97 21.65 0.30 -59.97 16 13 Si 0.95 42.07 27.74 68.60 1.90 43.97 16 14 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 15 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 16 H -0.24 -8.77 6.52 99.48 0.65 -8.13 16 17 N -0.70 -16.40 4.49 -442.52 -1.99 -18.39 16 18 C 0.50 12.69 7.82 87.66 0.69 13.37 16 19 O -0.56 -20.03 15.34 -3.05 -0.05 -20.07 16 20 C 0.09 1.49 6.94 85.63 0.59 2.08 16 21 N -0.28 -6.65 3.20 -351.47 -1.12 -7.78 16 22 C -0.04 -0.80 10.89 83.49 0.91 0.11 16 23 C 0.00 -0.11 6.88 41.60 0.29 0.18 16 24 C -0.10 -1.74 6.33 -11.54 -0.07 -1.81 16 25 C -0.15 -1.66 10.02 30.59 0.31 -1.35 16 26 C -0.16 -2.15 10.23 30.59 0.31 -1.84 16 27 N -0.31 -10.02 12.41 -48.60 -0.60 -10.62 16 28 N -0.09 -3.06 12.13 37.02 0.45 -2.61 16 29 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 30 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.04 1.13 6.37 -2.39 -0.02 1.11 16 32 H 0.07 1.77 6.37 -2.39 -0.02 1.76 16 33 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.06 1.05 8.14 -2.39 -0.02 1.04 16 35 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.04 1.44 6.66 -2.38 -0.02 1.43 16 39 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.36 14.62 5.20 -92.71 -0.48 14.14 16 41 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 42 H 0.42 7.69 8.64 -92.71 -0.80 6.89 16 43 H 0.17 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.17 1.58 8.07 -2.39 -0.02 1.56 16 45 H 0.23 2.43 7.45 -2.91 -0.02 2.40 16 46 H 0.12 2.13 8.14 -2.38 -0.02 2.11 16 47 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 48 H 0.11 0.94 7.22 -2.39 -0.02 0.92 16 49 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 50 H 0.11 1.18 8.14 -2.38 -0.02 1.16 16 Total: -1.00 -81.11 407.32 3.07 -78.05 By element: Atomic # 1 Polarization: 34.56 SS G_CDS: -0.39 Total: 34.17 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: 6.35 Total: -3.61 kcal Atomic # 7 Polarization: -127.74 SS G_CDS: -4.76 Total: -132.50 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: -0.05 Total: -20.07 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 1.90 Total: 43.97 kcal Total: -81.11 3.07 -78.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667093453.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.459 kcal (2) G-P(sol) polarization free energy of solvation -81.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds