Wall clock time and date at job start Tue Mar 31 2020 18:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30830 * 125.96606 * 2 1 4 4 C 1.33239 * 109.83508 * 180.02562 * 3 2 1 5 5 C 1.50699 * 125.53031 * 180.02562 * 4 3 2 6 6 C 1.50692 * 109.47400 * 89.99773 * 5 4 3 7 7 O 1.21281 * 120.00063 * 0.02562 * 6 5 4 8 8 N 1.34781 * 120.00199 * 179.97438 * 6 5 4 9 9 C 1.46501 * 119.99999 * 179.97438 * 8 6 5 10 10 H 1.08994 * 109.47028 * 35.00577 * 9 8 6 11 11 C 1.53002 * 109.46683 * 155.00102 * 9 8 6 12 12 N 1.46501 * 109.47399 * 305.00133 * 11 9 8 13 13 C 1.36933 * 120.00256 * 180.02562 * 12 11 9 14 14 H 1.08001 * 119.99943 * 359.97438 * 13 12 11 15 15 C 1.38811 * 120.00286 * 179.97438 * 13 12 11 16 16 N 1.31618 * 119.99783 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00007 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47080 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47137 * 120.00020 * 17 15 13 20 20 H 1.48506 * 109.46914 * 239.99826 * 17 15 13 21 21 C 1.52997 * 109.47384 * 275.00079 * 9 8 6 22 22 C 1.52996 * 109.46975 * 64.99993 * 21 9 8 23 23 C 1.53000 * 109.47328 * 180.02562 * 22 21 9 24 24 C 1.52997 * 109.47060 * 60.00126 * 23 22 21 25 25 C 1.53006 * 109.47127 * 300.00449 * 24 23 22 26 26 C 1.52997 * 109.47164 * 59.99836 * 25 24 23 27 27 N 1.30716 * 108.94218 * 0.26176 * 4 3 2 28 28 N 1.34429 * 125.96136 * 180.02562 * 2 1 3 29 29 H 0.97009 * 126.81930 * 359.97438 * 28 2 1 30 30 H 1.08999 * 109.46923 * 89.97242 * 1 2 3 31 31 H 1.08998 * 109.46994 * 209.97641 * 1 2 3 32 32 H 1.09003 * 109.46788 * 329.97098 * 1 2 3 33 33 H 1.08999 * 109.46599 * 329.99542 * 5 4 3 34 34 H 1.09004 * 109.46981 * 210.00013 * 5 4 3 35 35 H 0.96994 * 119.99617 * 0.02562 * 8 6 5 36 36 H 1.09002 * 109.47140 * 65.00200 * 11 9 8 37 37 H 1.09004 * 109.46630 * 184.99946 * 11 9 8 38 38 H 0.97005 * 119.99711 * 359.97438 * 12 11 9 39 39 H 0.97001 * 120.00097 * 180.02562 * 16 15 13 40 40 H 1.08992 * 109.47280 * 185.00528 * 21 9 8 41 41 H 1.09004 * 109.47368 * 60.00217 * 22 21 9 42 42 H 1.09001 * 109.47372 * 300.00372 * 22 21 9 43 43 H 1.09002 * 109.47398 * 180.02562 * 23 22 21 44 44 H 1.09001 * 109.47194 * 300.00476 * 23 22 21 45 45 H 1.08998 * 109.47533 * 59.99948 * 24 23 22 46 46 H 1.08996 * 109.47853 * 180.02562 * 24 23 22 47 47 H 1.09001 * 109.47002 * 299.99574 * 25 24 23 48 48 H 1.09000 * 109.47050 * 179.97438 * 25 24 23 49 49 H 1.09002 * 109.47045 * 180.02562 * 26 25 24 50 50 H 1.09001 * 109.47375 * 59.99966 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2754 1.0589 0.0000 4 6 3.5553 0.6887 -0.0006 5 6 4.7373 1.6235 -0.0002 6 6 5.1317 1.9342 1.4206 7 8 4.5140 1.4444 2.3423 8 7 6.1714 2.7556 1.6672 9 6 6.5544 3.0581 3.0486 10 1 6.3921 2.1785 3.6715 11 6 8.0329 3.4492 3.0938 12 7 8.8377 2.3881 2.4834 13 6 10.1990 2.5171 2.4105 14 1 10.6793 3.4014 2.8026 15 6 10.9616 1.5115 1.8326 16 7 10.3762 0.4341 1.3543 17 14 12.8186 1.6880 1.7325 18 1 13.2259 2.9826 2.3351 19 1 13.4624 0.5728 2.4721 20 1 13.2435 1.6491 0.3101 21 6 5.7039 4.2174 3.5715 22 6 4.2387 3.7830 3.6436 23 6 3.3880 4.9425 4.1659 24 6 3.5195 6.1379 3.2201 25 6 4.9849 6.5724 3.1479 26 6 5.8354 5.4128 2.6256 27 7 3.6194 -0.6169 -0.0066 28 7 2.2964 -1.0881 -0.0005 29 1 2.0092 -2.0147 -0.0006 30 1 -0.3633 0.0005 -1.0277 31 1 -0.3633 -0.8902 0.5135 32 1 -0.3633 0.8898 0.5143 33 1 4.4701 2.5472 -0.5134 34 1 5.5743 1.1511 -0.5146 35 1 6.6656 3.1470 0.9301 36 1 8.1798 4.3787 2.5437 37 1 8.3404 3.5879 4.1303 38 1 8.4063 1.5937 2.1316 39 1 10.9091 -0.2689 0.9509 40 1 6.0482 4.5009 4.5659 41 1 4.1450 2.9310 4.3171 42 1 3.8944 3.4994 2.6490 43 1 2.3442 4.6329 4.2177 44 1 3.7322 5.2265 5.1604 45 1 3.1754 5.8541 2.2256 46 1 2.9139 6.9642 3.5923 47 1 5.3291 6.8563 4.1424 48 1 5.0786 7.4237 2.4737 49 1 6.8794 5.7222 2.5746 50 1 5.4912 5.1288 1.6311 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667135242.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:29 Heat of formation + Delta-G solvation = 34.530015 kcal Electronic energy + Delta-G solvation = -30091.875520 eV Core-core repulsion = 26155.044965 eV Total energy + Delta-G solvation = -3936.830555 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.15520 -40.01389 -37.94331 -35.63703 -33.66321 -33.52397 -32.40446 -31.59187 -30.65247 -30.42710 -29.61312 -27.81190 -26.85743 -23.87485 -22.65471 -22.09539 -21.66761 -21.12825 -20.13760 -19.83680 -19.18436 -17.92581 -17.25167 -16.78765 -15.90444 -15.56309 -15.39505 -14.77992 -14.57077 -14.53880 -13.99878 -13.96860 -13.74998 -13.54884 -13.37610 -13.20157 -13.09420 -13.01025 -12.83506 -12.32368 -12.14471 -12.05784 -11.85750 -11.80345 -11.53634 -10.96348 -10.92721 -10.89258 -10.77773 -10.71668 -10.31101 -10.14934 -10.10425 -10.02863 -9.94880 -9.73625 -9.63639 -9.58584 -9.29954 -8.87692 -8.47782 -6.92432 -5.75676 -3.05208 1.57352 2.57838 2.78318 3.03639 3.43437 3.49260 3.51526 3.63225 3.95386 4.50499 4.58054 4.66319 4.85652 4.90935 4.93662 5.08000 5.10145 5.17404 5.34627 5.40384 5.44953 5.50621 5.53000 5.56263 5.62346 5.64613 5.71274 5.74546 5.82573 5.90747 6.02559 6.07342 6.16885 6.22340 6.23924 6.27624 6.39603 6.39928 6.41482 6.52107 6.55589 6.61307 6.75753 6.80359 6.99329 7.04642 7.70653 7.94531 8.08872 8.42087 8.63943 9.54021 10.10714 10.46040 11.46535 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.008576 B = 0.003865 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3264.188598 B = 7243.174666 C =10041.381981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.277 3.723 3 N -0.530 5.530 4 C 0.257 3.743 5 C -0.054 4.054 6 C 0.525 3.475 7 O -0.534 6.534 8 N -0.705 5.705 9 C 0.145 3.855 10 H 0.085 0.915 11 C 0.144 3.856 12 N -0.731 5.731 13 C -0.241 4.241 14 H 0.070 0.930 15 C -0.012 4.012 16 N -0.929 5.929 17 Si 0.906 3.094 18 H -0.281 1.281 19 H -0.292 1.292 20 H -0.292 1.292 21 C -0.093 4.093 22 C -0.104 4.104 23 C -0.119 4.119 24 C -0.117 4.117 25 C -0.117 4.117 26 C -0.114 4.114 27 N -0.298 5.298 28 N -0.484 5.484 29 H 0.438 0.562 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.118 0.882 34 H 0.120 0.880 35 H 0.404 0.596 36 H 0.029 0.971 37 H 0.031 0.969 38 H 0.386 0.614 39 H 0.254 0.746 40 H 0.074 0.926 41 H 0.062 0.938 42 H 0.067 0.933 43 H 0.054 0.946 44 H 0.055 0.945 45 H 0.059 0.941 46 H 0.053 0.947 47 H 0.058 0.942 48 H 0.056 0.944 49 H 0.067 0.933 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.283 5.482 -2.449 22.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.001 4.001 3 N -0.260 5.260 4 C -0.026 4.026 5 C -0.096 4.096 6 C 0.309 3.691 7 O -0.411 6.411 8 N -0.357 5.357 9 C 0.040 3.960 10 H 0.103 0.897 11 C 0.016 3.984 12 N -0.376 5.376 13 C -0.372 4.372 14 H 0.088 0.912 15 C -0.208 4.208 16 N -0.578 5.578 17 Si 0.737 3.263 18 H -0.206 1.206 19 H -0.219 1.219 20 H -0.219 1.219 21 C -0.113 4.113 22 C -0.142 4.142 23 C -0.157 4.157 24 C -0.155 4.155 25 C -0.155 4.155 26 C -0.151 4.151 27 N -0.127 5.127 28 N -0.202 5.202 29 H 0.283 0.717 30 H 0.108 0.892 31 H 0.100 0.900 32 H 0.116 0.884 33 H 0.136 0.864 34 H 0.138 0.862 35 H 0.239 0.761 36 H 0.046 0.954 37 H 0.048 0.952 38 H 0.220 0.780 39 H 0.064 0.936 40 H 0.092 0.908 41 H 0.080 0.920 42 H 0.086 0.914 43 H 0.073 0.927 44 H 0.074 0.926 45 H 0.078 0.922 46 H 0.072 0.928 47 H 0.077 0.923 48 H 0.075 0.925 49 H 0.086 0.914 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -20.959 5.183 -1.767 21.663 hybrid contribution 0.895 -0.807 -0.496 1.303 sum -20.065 4.375 -2.263 20.661 Atomic orbital electron populations 1.20354 0.83887 1.04926 1.04265 1.24313 0.96485 0.82963 0.96382 1.70273 1.01311 1.29477 1.24903 1.23266 0.92463 0.89713 0.97205 1.19939 0.93887 0.98659 0.97131 1.19935 0.80378 0.78686 0.90110 1.90704 1.53113 1.51444 1.45820 1.45822 1.32200 1.48361 1.09270 1.21269 0.94400 0.97718 0.82575 0.89671 1.21014 0.87493 0.92832 0.97092 1.42364 1.03699 1.20192 1.71330 1.19246 0.83024 1.02546 1.32361 0.91160 1.24742 0.97886 0.96728 1.01488 1.69679 1.34203 1.08725 1.45183 0.86141 0.85795 0.77169 0.77200 1.20594 1.21941 1.21905 1.21521 0.95649 0.94879 0.99245 1.21601 0.93686 0.96613 1.02272 1.21558 0.99596 0.95829 0.98679 1.21516 0.96527 0.97546 0.99878 1.21520 0.95174 0.97806 1.00969 1.21604 0.99924 0.94508 0.99098 1.78085 0.96252 1.12362 1.25982 1.47952 1.04399 1.09898 1.57967 0.71686 0.89184 0.90028 0.88446 0.86427 0.86153 0.76121 0.95369 0.95175 0.77977 0.93571 0.90754 0.91973 0.91415 0.92719 0.92604 0.92246 0.92833 0.92307 0.92498 0.91437 0.91971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.44 10.51 36.01 0.38 -0.06 16 2 C 0.28 3.15 8.24 -155.70 -1.28 1.87 16 3 N -0.53 -7.79 11.19 -8.16 -0.09 -7.88 16 4 C 0.26 4.05 6.63 -156.85 -1.04 3.01 16 5 C -0.05 -0.75 6.33 -29.04 -0.18 -0.94 16 6 C 0.52 8.66 6.39 -10.99 -0.07 8.59 16 7 O -0.53 -10.48 13.18 5.56 0.07 -10.40 16 8 N -0.71 -11.01 3.49 -53.81 -0.19 -11.20 16 9 C 0.15 2.42 2.11 -67.93 -0.14 2.28 16 10 H 0.09 1.66 7.58 -51.93 -0.39 1.27 16 11 C 0.14 2.75 5.68 -4.04 -0.02 2.73 16 12 N -0.73 -17.93 5.43 -59.91 -0.33 -18.25 16 13 C -0.24 -6.59 9.99 -15.06 -0.15 -6.74 16 14 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 15 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 16 N -0.93 -27.97 13.06 55.49 0.72 -27.24 16 17 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 20 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 21 C -0.09 -1.30 2.01 -90.62 -0.18 -1.48 16 22 C -0.10 -1.50 3.81 -26.73 -0.10 -1.60 16 23 C -0.12 -1.44 5.92 -26.73 -0.16 -1.60 16 24 C -0.12 -1.28 5.92 -26.73 -0.16 -1.44 16 25 C -0.12 -1.28 5.92 -26.73 -0.16 -1.44 16 26 C -0.11 -1.41 4.75 -26.73 -0.13 -1.54 16 27 N -0.30 -4.81 12.80 32.42 0.41 -4.40 16 28 N -0.48 -5.67 7.45 32.62 0.24 -5.43 16 29 H 0.44 3.37 8.96 -182.33 -1.63 1.74 16 30 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.12 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.12 1.60 8.14 -51.93 -0.42 1.18 16 35 H 0.40 5.91 8.60 -40.82 -0.35 5.56 16 36 H 0.03 0.52 6.34 -51.93 -0.33 0.19 16 37 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.39 10.17 7.33 -40.82 -0.30 9.88 16 39 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 40 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.06 1.01 7.85 -51.93 -0.41 0.60 16 42 H 0.07 1.08 5.65 -51.93 -0.29 0.79 16 43 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 49 H 0.07 0.86 6.46 -51.93 -0.34 0.53 16 50 H 0.06 0.77 7.47 -51.93 -0.39 0.39 16 LS Contribution 395.41 15.07 5.96 5.96 Total: -1.00 -35.71 395.41 -11.19 -46.89 By element: Atomic # 1 Polarization: 22.96 SS G_CDS: -9.47 Total: 13.49 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: -3.50 Total: 1.21 kcal Atomic # 7 Polarization: -75.18 SS G_CDS: 0.78 Total: -74.40 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.07 Total: -10.40 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.71 -11.19 -46.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667135242.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.424 kcal (2) G-P(sol) polarization free energy of solvation -35.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds