Wall clock time and date at job start Tue Mar 31 2020 18:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30830 * 125.96606 * 2 1 4 4 C 1.33239 * 109.83508 * 180.02562 * 3 2 1 5 5 C 1.50699 * 125.53031 * 180.02562 * 4 3 2 6 6 C 1.50692 * 109.47400 * 89.99773 * 5 4 3 7 7 O 1.21281 * 120.00063 * 0.02562 * 6 5 4 8 8 N 1.34781 * 120.00199 * 179.97438 * 6 5 4 9 9 C 1.46501 * 119.99999 * 179.97438 * 8 6 5 10 10 H 1.08994 * 109.47028 * 35.00577 * 9 8 6 11 11 C 1.53002 * 109.46683 * 155.00102 * 9 8 6 12 12 N 1.46501 * 109.47399 * 305.00133 * 11 9 8 13 13 C 1.36933 * 120.00256 * 180.02562 * 12 11 9 14 14 H 1.08001 * 119.99943 * 359.97438 * 13 12 11 15 15 C 1.38811 * 120.00286 * 179.97438 * 13 12 11 16 16 N 1.31618 * 119.99783 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00007 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47080 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47137 * 120.00020 * 17 15 13 20 20 H 1.48506 * 109.46914 * 239.99826 * 17 15 13 21 21 C 1.52997 * 109.47384 * 275.00079 * 9 8 6 22 22 C 1.52996 * 109.46975 * 64.99993 * 21 9 8 23 23 C 1.53000 * 109.47328 * 180.02562 * 22 21 9 24 24 C 1.52997 * 109.47060 * 60.00126 * 23 22 21 25 25 C 1.53006 * 109.47127 * 300.00449 * 24 23 22 26 26 C 1.52997 * 109.47164 * 59.99836 * 25 24 23 27 27 N 1.30716 * 108.94218 * 0.26176 * 4 3 2 28 28 N 1.34429 * 125.96136 * 180.02562 * 2 1 3 29 29 H 0.97009 * 126.81930 * 359.97438 * 28 2 1 30 30 H 1.08999 * 109.46923 * 89.97242 * 1 2 3 31 31 H 1.08998 * 109.46994 * 209.97641 * 1 2 3 32 32 H 1.09003 * 109.46788 * 329.97098 * 1 2 3 33 33 H 1.08999 * 109.46599 * 329.99542 * 5 4 3 34 34 H 1.09004 * 109.46981 * 210.00013 * 5 4 3 35 35 H 0.96994 * 119.99617 * 0.02562 * 8 6 5 36 36 H 1.09002 * 109.47140 * 65.00200 * 11 9 8 37 37 H 1.09004 * 109.46630 * 184.99946 * 11 9 8 38 38 H 0.97005 * 119.99711 * 359.97438 * 12 11 9 39 39 H 0.97001 * 120.00097 * 180.02562 * 16 15 13 40 40 H 1.08992 * 109.47280 * 185.00528 * 21 9 8 41 41 H 1.09004 * 109.47368 * 60.00217 * 22 21 9 42 42 H 1.09001 * 109.47372 * 300.00372 * 22 21 9 43 43 H 1.09002 * 109.47398 * 180.02562 * 23 22 21 44 44 H 1.09001 * 109.47194 * 300.00476 * 23 22 21 45 45 H 1.08998 * 109.47533 * 59.99948 * 24 23 22 46 46 H 1.08996 * 109.47853 * 180.02562 * 24 23 22 47 47 H 1.09001 * 109.47002 * 299.99574 * 25 24 23 48 48 H 1.09000 * 109.47050 * 179.97438 * 25 24 23 49 49 H 1.09002 * 109.47045 * 180.02562 * 26 25 24 50 50 H 1.09001 * 109.47375 * 59.99966 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2754 1.0589 0.0000 4 6 3.5553 0.6887 -0.0006 5 6 4.7373 1.6235 -0.0002 6 6 5.1317 1.9342 1.4206 7 8 4.5140 1.4444 2.3423 8 7 6.1714 2.7556 1.6672 9 6 6.5544 3.0581 3.0486 10 1 6.3921 2.1785 3.6715 11 6 8.0329 3.4492 3.0938 12 7 8.8377 2.3881 2.4834 13 6 10.1990 2.5171 2.4105 14 1 10.6793 3.4014 2.8026 15 6 10.9616 1.5115 1.8326 16 7 10.3762 0.4341 1.3543 17 14 12.8186 1.6880 1.7325 18 1 13.2259 2.9826 2.3351 19 1 13.4624 0.5728 2.4721 20 1 13.2435 1.6491 0.3101 21 6 5.7039 4.2174 3.5715 22 6 4.2387 3.7830 3.6436 23 6 3.3880 4.9425 4.1659 24 6 3.5195 6.1379 3.2201 25 6 4.9849 6.5724 3.1479 26 6 5.8354 5.4128 2.6256 27 7 3.6194 -0.6169 -0.0066 28 7 2.2964 -1.0881 -0.0005 29 1 2.0092 -2.0147 -0.0006 30 1 -0.3633 0.0005 -1.0277 31 1 -0.3633 -0.8902 0.5135 32 1 -0.3633 0.8898 0.5143 33 1 4.4701 2.5472 -0.5134 34 1 5.5743 1.1511 -0.5146 35 1 6.6656 3.1470 0.9301 36 1 8.1798 4.3787 2.5437 37 1 8.3404 3.5879 4.1303 38 1 8.4063 1.5937 2.1316 39 1 10.9091 -0.2689 0.9509 40 1 6.0482 4.5009 4.5659 41 1 4.1450 2.9310 4.3171 42 1 3.8944 3.4994 2.6490 43 1 2.3442 4.6329 4.2177 44 1 3.7322 5.2265 5.1604 45 1 3.1754 5.8541 2.2256 46 1 2.9139 6.9642 3.5923 47 1 5.3291 6.8563 4.1424 48 1 5.0786 7.4237 2.4737 49 1 6.8794 5.7222 2.5746 50 1 5.4912 5.1288 1.6311 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667135242.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:28 Heat of formation + Delta-G solvation = 10.265409 kcal Electronic energy + Delta-G solvation = -30092.927712 eV Core-core repulsion = 26155.044965 eV Total energy + Delta-G solvation = -3937.882747 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.16013 -41.30760 -39.12339 -37.14857 -35.28429 -34.66813 -33.34508 -33.10641 -32.16076 -31.54375 -30.60145 -28.78956 -28.34367 -25.62297 -23.92790 -23.25052 -22.94078 -22.13519 -21.32953 -21.01898 -20.33849 -19.21335 -18.87630 -18.13739 -17.23581 -16.81612 -16.51398 -16.36587 -15.90708 -15.57389 -15.35508 -15.13246 -14.88348 -14.79780 -14.73808 -14.50121 -14.36922 -13.81580 -13.62030 -13.60281 -13.39295 -13.23707 -13.11763 -12.89270 -12.80506 -12.71901 -12.56973 -12.18319 -11.99239 -11.95956 -11.89421 -11.73787 -11.31927 -11.21303 -11.10473 -11.08335 -10.96035 -10.82564 -10.68262 -10.43831 -9.82107 -8.97346 -7.91793 -5.21058 0.59052 1.49109 1.49801 1.59674 1.65834 1.72204 1.77700 2.42450 2.57897 3.02592 3.42550 3.56188 3.64186 3.80036 3.85669 3.91662 4.01377 4.18344 4.21533 4.32223 4.39774 4.42332 4.52295 4.54807 4.62722 4.70897 4.71314 4.74055 4.75807 4.78770 4.85079 4.94374 5.04618 5.08875 5.19047 5.26661 5.27853 5.31442 5.34874 5.38086 5.39272 5.46051 5.53736 5.56199 5.64748 5.72231 6.22586 6.28666 6.64120 7.07893 7.33518 7.36122 8.10275 8.33972 9.31279 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.008576 B = 0.003865 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3264.188598 B = 7243.174666 C =10041.381981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.284 3.716 3 N -0.561 5.561 4 C 0.242 3.758 5 C -0.050 4.050 6 C 0.524 3.476 7 O -0.569 6.569 8 N -0.698 5.698 9 C 0.156 3.844 10 H 0.050 0.950 11 C 0.147 3.853 12 N -0.742 5.742 13 C -0.239 4.239 14 H 0.079 0.921 15 C -0.074 4.074 16 N -0.968 5.968 17 Si 0.971 3.029 18 H -0.264 1.264 19 H -0.299 1.299 20 H -0.293 1.293 21 C -0.084 4.084 22 C -0.095 4.095 23 C -0.116 4.116 24 C -0.113 4.113 25 C -0.113 4.113 26 C -0.110 4.110 27 N -0.345 5.345 28 N -0.477 5.477 29 H 0.454 0.546 30 H 0.114 0.886 31 H 0.109 0.891 32 H 0.098 0.902 33 H 0.146 0.854 34 H 0.124 0.876 35 H 0.410 0.590 36 H 0.048 0.952 37 H 0.030 0.970 38 H 0.374 0.626 39 H 0.249 0.751 40 H 0.079 0.921 41 H 0.033 0.967 42 H 0.050 0.950 43 H 0.055 0.945 44 H 0.063 0.937 45 H 0.054 0.946 46 H 0.072 0.928 47 H 0.064 0.936 48 H 0.072 0.928 49 H 0.067 0.933 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.406 7.536 -2.701 23.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.006 3.994 3 N -0.291 5.291 4 C -0.041 4.041 5 C -0.092 4.092 6 C 0.310 3.690 7 O -0.448 6.448 8 N -0.350 5.350 9 C 0.051 3.949 10 H 0.069 0.931 11 C 0.020 3.980 12 N -0.385 5.385 13 C -0.371 4.371 14 H 0.097 0.903 15 C -0.267 4.267 16 N -0.619 5.619 17 Si 0.801 3.199 18 H -0.188 1.188 19 H -0.227 1.227 20 H -0.220 1.220 21 C -0.104 4.104 22 C -0.132 4.132 23 C -0.153 4.153 24 C -0.151 4.151 25 C -0.151 4.151 26 C -0.147 4.147 27 N -0.174 5.174 28 N -0.197 5.197 29 H 0.302 0.698 30 H 0.133 0.867 31 H 0.128 0.872 32 H 0.117 0.883 33 H 0.164 0.836 34 H 0.142 0.858 35 H 0.246 0.754 36 H 0.066 0.934 37 H 0.048 0.952 38 H 0.206 0.794 39 H 0.058 0.942 40 H 0.098 0.902 41 H 0.052 0.948 42 H 0.069 0.931 43 H 0.074 0.926 44 H 0.082 0.918 45 H 0.073 0.927 46 H 0.091 0.909 47 H 0.083 0.917 48 H 0.091 0.909 49 H 0.085 0.915 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -22.098 7.271 -2.010 23.350 hybrid contribution 1.129 -1.475 -0.365 1.893 sum -20.969 5.797 -2.375 21.885 Atomic orbital electron populations 1.20639 0.79834 1.06359 1.06231 1.25318 0.98365 0.81972 0.93723 1.70271 1.01175 1.31110 1.26568 1.23501 0.93349 0.89854 0.97392 1.19974 0.93877 0.99889 0.95431 1.20344 0.79901 0.77947 0.90857 1.90684 1.54300 1.52714 1.47129 1.45736 1.31999 1.48202 1.09019 1.21048 0.93539 0.97500 0.82831 0.93127 1.21141 0.88141 0.92019 0.96684 1.42542 1.03435 1.20973 1.71569 1.19653 0.84341 1.02337 1.30768 0.90299 1.25533 1.02172 0.96758 1.02203 1.69843 1.35545 1.09626 1.46861 0.85103 0.80648 0.77356 0.76806 1.18849 1.22709 1.22043 1.21441 0.94712 0.94377 0.99867 1.21444 0.94381 0.96716 1.00697 1.21534 0.99082 0.95354 0.99353 1.21494 0.96943 0.97372 0.99274 1.21506 0.94595 0.97389 1.01599 1.21571 1.00372 0.94218 0.98571 1.77955 0.98957 1.12933 1.27577 1.47867 1.03186 1.11023 1.57598 0.69816 0.86741 0.87222 0.88306 0.83590 0.85832 0.75364 0.93378 0.95184 0.79429 0.94238 0.90228 0.94811 0.93084 0.92591 0.91806 0.92708 0.90932 0.91721 0.90920 0.91452 0.92024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.66 10.51 71.24 0.75 0.08 16 2 C 0.28 6.20 8.24 138.23 1.14 7.34 16 3 N -0.56 -16.44 11.19 -179.73 -2.01 -18.45 16 4 C 0.24 7.82 6.63 138.63 0.92 8.74 16 5 C -0.05 -1.43 6.33 29.10 0.18 -1.24 16 6 C 0.52 17.92 6.39 87.65 0.56 18.48 16 7 O -0.57 -23.46 13.18 -3.03 -0.04 -23.50 16 8 N -0.70 -22.29 3.49 -442.54 -1.54 -23.83 16 9 C 0.16 5.31 2.11 44.99 0.09 5.41 16 10 H 0.05 2.09 7.58 -2.39 -0.02 2.07 16 11 C 0.15 5.59 5.68 86.38 0.49 6.08 16 12 N -0.74 -36.76 5.43 -343.44 -1.87 -38.62 16 13 C -0.24 -13.04 9.99 84.03 0.84 -12.20 16 14 H 0.08 4.10 7.83 -2.91 -0.02 4.07 16 15 C -0.07 -4.24 5.50 84.86 0.47 -3.77 16 16 N -0.97 -59.44 13.06 21.65 0.28 -59.15 16 17 Si 0.97 45.97 29.55 68.60 2.03 48.00 16 18 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 19 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 20 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 21 C -0.08 -2.31 2.01 -10.80 -0.02 -2.33 16 22 C -0.09 -2.74 3.81 30.59 0.12 -2.63 16 23 C -0.12 -2.64 5.92 30.59 0.18 -2.46 16 24 C -0.11 -2.19 5.92 30.60 0.18 -2.01 16 25 C -0.11 -2.15 5.92 30.60 0.18 -1.97 16 26 C -0.11 -2.52 4.75 30.59 0.15 -2.37 16 27 N -0.34 -11.44 12.80 -51.33 -0.66 -12.09 16 28 N -0.48 -11.05 7.45 -50.71 -0.38 -11.43 16 29 H 0.45 6.71 8.96 -213.09 -1.91 4.80 16 30 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.15 3.21 8.14 -2.39 -0.02 3.19 16 34 H 0.12 3.41 8.14 -2.39 -0.02 3.39 16 35 H 0.41 12.04 8.60 -92.71 -0.80 11.24 16 36 H 0.05 1.69 6.34 -2.39 -0.02 1.68 16 37 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.37 20.26 7.33 -92.70 -0.68 19.58 16 39 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 40 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.03 1.15 7.85 -2.39 -0.02 1.13 16 42 H 0.05 1.65 5.65 -2.39 -0.01 1.64 16 43 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.05 1.12 8.14 -2.39 -0.02 1.11 16 46 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 47 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 48 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 49 H 0.07 1.56 6.46 -2.39 -0.02 1.54 16 50 H 0.06 1.43 7.47 -2.39 -0.02 1.41 16 Total: -1.00 -79.14 395.41 -0.37 -79.51 By element: Atomic # 1 Polarization: 46.84 SS G_CDS: -2.41 Total: 44.42 kcal Atomic # 6 Polarization: 8.92 SS G_CDS: 6.23 Total: 15.15 kcal Atomic # 7 Polarization: -157.41 SS G_CDS: -6.17 Total: -163.58 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: -0.04 Total: -23.50 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Total: -79.14 -0.37 -79.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667135242.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.779 kcal (2) G-P(sol) polarization free energy of solvation -79.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds