Wall clock time and date at job start Tue Mar 31 2020 20:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47044 * 2 1 4 4 C 1.53003 * 109.47044 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47098 * 180.02562 * 4 3 2 6 6 N 1.40074 * 126.05946 * 90.02375 * 5 4 3 7 7 C 1.30840 * 108.36138 * 179.97438 * 6 5 4 8 8 C 1.40233 * 108.34595 * 0.02562 * 7 6 5 9 9 N 1.40839 * 126.07964 * 179.97438 * 8 7 6 10 10 C 1.34784 * 119.99900 * 0.02562 * 9 8 7 11 11 O 1.21602 * 119.99670 * 354.88658 * 10 9 8 12 12 N 1.34775 * 120.00040 * 174.88893 * 10 9 8 13 13 C 1.46968 * 120.59112 * 185.16810 * 12 10 9 14 14 C 1.53368 * 108.63206 * 235.20511 * 13 12 10 15 15 N 1.46968 * 108.63607 * 310.57179 * 14 13 12 16 16 C 1.36930 * 120.59883 * 235.20536 * 15 14 13 17 17 H 1.08003 * 120.00090 * 148.30184 * 16 15 14 18 18 C 1.38816 * 120.00062 * 328.02453 * 16 15 14 19 19 N 1.31616 * 119.99647 * 350.29607 * 18 16 15 20 20 Si 1.86790 * 120.00007 * 170.29207 * 18 16 15 21 21 H 1.48498 * 109.47451 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.47163 * 120.00083 * 20 18 16 23 23 H 1.48505 * 109.47370 * 239.99961 * 20 18 16 24 24 C 1.46966 * 118.80713 * 55.48404 * 15 14 13 25 25 C 1.46962 * 120.59412 * 5.14485 * 12 10 9 26 26 C 1.35736 * 107.84618 * 0.22419 * 8 7 6 27 27 C 1.50698 * 126.21482 * 179.77209 * 26 8 7 28 28 H 1.09004 * 109.46689 * 59.99692 * 1 2 3 29 29 H 1.08991 * 109.47073 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47022 * 300.00229 * 1 2 3 31 31 H 1.09002 * 109.47374 * 240.00444 * 2 1 3 32 32 H 1.08997 * 109.47241 * 120.00001 * 2 1 3 33 33 H 1.09007 * 109.47109 * 60.00188 * 3 2 1 34 34 H 1.08997 * 109.47102 * 300.00087 * 3 2 1 35 35 H 1.08994 * 109.47383 * 60.00084 * 4 3 2 36 36 H 1.09004 * 109.46961 * 299.99831 * 4 3 2 37 37 H 1.08001 * 125.82485 * 180.02562 * 7 6 5 38 38 H 0.96998 * 120.00455 * 180.02562 * 9 8 7 39 39 H 1.09003 * 109.60545 * 115.46263 * 13 12 10 40 40 H 1.08997 * 109.60891 * 354.94916 * 13 12 10 41 41 H 1.09009 * 109.60357 * 190.83578 * 14 13 12 42 42 H 1.08995 * 109.75684 * 70.40938 * 14 13 12 43 43 H 0.96999 * 120.00182 * 180.02562 * 19 18 16 44 44 H 1.09001 * 109.60874 * 64.26161 * 24 15 14 45 45 H 1.09002 * 109.61009 * 184.77349 * 24 15 14 46 46 H 1.08997 * 109.61427 * 244.53828 * 25 12 10 47 47 H 1.08998 * 109.60996 * 4.88331 * 25 12 10 48 48 H 1.09002 * 109.46989 * 90.02411 * 27 26 8 49 49 H 1.08999 * 109.47173 * 210.02469 * 27 26 8 50 50 H 1.08996 * 109.47578 * 330.02541 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 7 4.0584 2.8237 0.0000 6 7 4.3341 3.6003 1.1327 7 6 4.7498 4.7756 0.7355 8 6 4.7538 4.7916 -0.6668 9 7 5.1355 5.8742 -1.4828 10 6 5.5452 7.0292 -0.9218 11 8 5.4973 7.1695 0.2851 12 7 6.0080 8.0287 -1.6986 13 6 6.5628 9.2488 -1.0959 14 6 5.8084 10.4599 -1.6583 15 7 5.7677 10.3490 -3.1232 16 6 6.2379 11.3645 -3.9124 17 1 6.6830 11.1417 -4.8709 18 6 6.1371 12.6807 -3.4831 19 7 5.4248 12.9719 -2.4153 20 14 7.0126 14.0385 -4.4206 21 1 7.7404 13.4531 -5.5751 22 1 6.0155 15.0230 -4.9123 23 1 7.9777 14.7191 -3.5201 24 6 5.2077 9.1313 -3.7259 25 6 5.9672 7.9177 -3.1635 26 6 4.3189 3.5802 -1.0979 27 6 4.1581 3.1512 -2.5335 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.6767 1.9564 0.8901 34 1 1.6767 1.9563 -0.8899 35 1 3.9330 0.9289 -0.8908 36 1 3.9337 0.9286 0.8892 37 1 5.0403 5.5937 1.3779 38 1 5.1037 5.7886 -2.4484 39 1 7.6214 9.3301 -1.3430 40 1 6.4391 9.2111 -0.0136 41 1 6.3257 11.3768 -1.3751 42 1 4.7923 10.4766 -1.2642 43 1 5.3540 13.8917 -2.1155 44 1 4.1498 9.0523 -3.4754 45 1 5.3279 9.1703 -4.8086 46 1 6.9832 7.9043 -3.5578 47 1 5.4527 6.9994 -3.4466 48 1 5.0870 2.7018 -2.8846 49 1 3.3513 2.4220 -2.6066 50 1 3.9197 4.0195 -3.1477 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001668171188.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:19 Heat of formation + Delta-G solvation = 55.705241 kcal Electronic energy + Delta-G solvation = -29177.341904 eV Core-core repulsion = 25241.429576 eV Total energy + Delta-G solvation = -3935.912328 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.47950 -41.12745 -38.57240 -36.97550 -35.90555 -35.49530 -33.77583 -33.06107 -32.34513 -31.54989 -29.19210 -28.57682 -27.49946 -25.52613 -24.87206 -24.45927 -23.12614 -22.16101 -21.78770 -21.04279 -20.37123 -19.24773 -18.14423 -18.04026 -16.99395 -16.88544 -16.69301 -16.41338 -16.08577 -15.79829 -15.44748 -15.35449 -15.15650 -14.99207 -14.85543 -14.63625 -14.13638 -14.04031 -13.83994 -13.65735 -13.40416 -13.37308 -13.05039 -12.96589 -12.72124 -12.47182 -12.40587 -12.37768 -12.24131 -11.99849 -11.97273 -11.88352 -11.70663 -11.70247 -11.62905 -11.48634 -11.06713 -10.60663 -10.14617 -9.85056 -8.68129 -8.48098 -7.84597 -5.40404 0.78399 1.36869 1.49172 1.51133 1.59194 1.61144 1.75972 2.35720 2.51830 2.90327 3.31243 3.60330 3.65978 3.73065 3.87181 4.01970 4.12696 4.16071 4.23300 4.26447 4.31636 4.44069 4.45549 4.51104 4.54619 4.64742 4.70002 4.76101 4.81101 4.85272 4.87782 4.92297 4.96755 4.99931 5.09265 5.11302 5.21116 5.25659 5.27104 5.32971 5.44713 5.51680 5.64652 5.69445 5.83550 5.97455 6.16209 6.40562 6.68474 6.95857 7.13132 7.51885 7.80872 8.35869 9.19612 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.027437 B = 0.002100 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.288221 B =13328.167995 C =13647.484929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.115 4.115 3 C -0.131 4.131 4 C 0.130 3.870 5 N -0.366 5.366 6 N -0.316 5.316 7 C 0.030 3.970 8 C -0.004 4.004 9 N -0.643 5.643 10 C 0.702 3.298 11 O -0.622 6.622 12 N -0.615 5.615 13 C 0.121 3.879 14 C 0.170 3.830 15 N -0.608 5.608 16 C -0.259 4.259 17 H 0.077 0.923 18 C -0.052 4.052 19 N -0.939 5.939 20 Si 0.972 3.028 21 H -0.261 1.261 22 H -0.296 1.296 23 H -0.293 1.293 24 C 0.126 3.874 25 C 0.104 3.896 26 C 0.059 3.941 27 C -0.087 4.087 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.044 0.956 31 H 0.085 0.915 32 H 0.069 0.931 33 H 0.046 0.954 34 H 0.069 0.931 35 H 0.126 0.874 36 H 0.096 0.904 37 H 0.180 0.820 38 H 0.417 0.583 39 H 0.068 0.932 40 H 0.075 0.925 41 H 0.072 0.928 42 H -0.011 1.011 43 H 0.250 0.750 44 H 0.012 0.988 45 H 0.084 0.916 46 H 0.081 0.919 47 H 0.105 0.895 48 H 0.100 0.900 49 H 0.095 0.905 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.178 -28.820 -3.106 29.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.153 4.153 3 C -0.170 4.170 4 C 0.011 3.989 5 N -0.151 5.151 6 N -0.139 5.139 7 C -0.156 4.156 8 C -0.109 4.109 9 N -0.295 5.295 10 C 0.404 3.596 11 O -0.503 6.503 12 N -0.351 5.351 13 C -0.003 4.003 14 C 0.043 3.957 15 N -0.332 5.332 16 C -0.389 4.389 17 H 0.095 0.905 18 C -0.247 4.247 19 N -0.586 5.586 20 Si 0.800 3.200 21 H -0.184 1.184 22 H -0.223 1.223 23 H -0.220 1.220 24 C 0.000 4.000 25 C -0.020 4.020 26 C -0.071 4.071 27 C -0.145 4.145 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.063 0.937 31 H 0.103 0.897 32 H 0.087 0.913 33 H 0.065 0.935 34 H 0.088 0.912 35 H 0.144 0.856 36 H 0.114 0.886 37 H 0.197 0.803 38 H 0.258 0.742 39 H 0.086 0.914 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.007 0.993 43 H 0.059 0.941 44 H 0.030 0.970 45 H 0.102 0.898 46 H 0.099 0.901 47 H 0.123 0.877 48 H 0.118 0.882 49 H 0.114 0.886 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.495 -29.398 -1.239 29.765 hybrid contribution 0.263 2.195 -0.775 2.343 sum -4.232 -27.203 -2.015 27.604 Atomic orbital electron populations 1.21779 0.95703 1.02214 1.01586 1.21426 0.96053 0.94316 1.03477 1.21990 0.93617 0.98988 1.02356 1.22068 0.94909 0.75864 1.06068 1.48722 1.51606 1.12637 1.02168 1.77299 1.22727 1.04065 1.09806 1.24218 1.00772 0.95882 0.94703 1.17397 1.13495 0.89506 0.90459 1.41763 1.68588 1.09747 1.09378 1.15866 0.78429 0.80478 0.84788 1.90742 1.63419 1.81842 1.14318 1.47205 1.63930 1.16776 1.07163 1.22030 0.97139 0.83449 0.97717 1.20915 0.95538 0.95504 0.83751 1.44199 1.70937 1.16745 1.01303 1.19611 1.31549 0.85683 1.02043 0.90527 1.26010 0.99489 0.99976 0.99266 1.70138 1.42870 1.18178 1.27365 0.85138 0.77513 0.79021 0.78333 1.18447 1.22277 1.22022 1.21571 0.94248 0.86273 0.97897 1.22383 1.02171 0.99287 0.78178 1.20974 1.03165 0.90269 0.92740 1.20599 1.04814 1.03780 0.85339 0.92639 0.91602 0.93723 0.89685 0.91272 0.93499 0.91237 0.85645 0.88572 0.80300 0.74212 0.91388 0.90694 0.90988 0.99319 0.94118 0.96972 0.89765 0.90116 0.87676 0.88185 0.88620 0.89094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.33 9.91 71.98 0.71 -0.62 16 2 C -0.11 -0.82 5.93 30.60 0.18 -0.64 16 3 C -0.13 -1.53 5.54 30.60 0.17 -1.36 16 4 C 0.13 1.61 6.09 86.38 0.53 2.13 16 5 N -0.37 -7.98 3.64 -333.69 -1.21 -9.19 16 6 N -0.32 -9.70 12.57 -56.78 -0.71 -10.42 16 7 C 0.03 1.02 10.84 85.33 0.92 1.94 16 8 C 0.00 -0.11 6.86 37.60 0.26 0.15 16 9 N -0.64 -17.63 5.38 -317.70 -1.71 -19.34 16 10 C 0.70 25.32 8.26 179.05 1.48 26.80 16 11 O -0.62 -26.92 12.93 -4.04 -0.05 -26.97 16 12 N -0.62 -21.85 2.95 -835.13 -2.46 -24.31 16 13 C 0.12 4.98 6.60 86.41 0.57 5.55 16 14 C 0.17 8.39 5.45 86.41 0.47 8.86 16 15 N -0.61 -29.32 2.95 -697.32 -2.06 -31.38 16 16 C -0.26 -13.49 9.58 84.04 0.80 -12.69 16 17 H 0.08 3.78 7.85 -2.91 -0.02 3.75 16 18 C -0.05 -2.84 5.07 84.86 0.43 -2.41 16 19 N -0.94 -55.31 11.00 21.65 0.24 -55.07 16 20 Si 0.97 43.69 29.56 68.60 2.03 45.72 16 21 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 22 H -0.30 -13.47 7.11 99.48 0.71 -12.76 16 23 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 24 C 0.13 4.69 6.70 86.57 0.58 5.27 16 25 C 0.10 2.97 6.58 86.57 0.57 3.54 16 26 C 0.06 1.21 6.98 41.36 0.29 1.50 16 27 C -0.09 -0.82 9.73 71.24 0.69 -0.13 16 28 H 0.05 0.48 8.14 -2.38 -0.02 0.46 16 29 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.04 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.05 0.80 8.14 -2.38 -0.02 0.79 16 34 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.13 0.69 7.72 -2.39 -0.02 0.67 16 36 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 37 H 0.18 6.92 5.93 -2.91 -0.02 6.91 16 38 H 0.42 8.27 5.56 -92.71 -0.52 7.75 16 39 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 40 H 0.07 3.18 6.99 -2.39 -0.02 3.16 16 41 H 0.07 3.98 6.03 -2.38 -0.01 3.97 16 42 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 43 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 44 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 45 H 0.08 2.81 7.93 -2.39 -0.02 2.79 16 46 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 47 H 0.11 2.04 5.61 -2.39 -0.01 2.03 16 48 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 49 H 0.10 0.51 7.78 -2.39 -0.02 0.49 16 50 H 0.09 0.73 7.61 -2.39 -0.02 0.71 16 Total: -1.00 -75.97 395.59 3.14 -72.82 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: 0.42 Total: 20.25 kcal Atomic # 6 Polarization: 29.22 SS G_CDS: 8.66 Total: 37.88 kcal Atomic # 7 Polarization: -141.79 SS G_CDS: -7.92 Total: -149.71 kcal Atomic # 8 Polarization: -26.92 SS G_CDS: -0.05 Total: -26.97 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -75.97 3.14 -72.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668171188.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.530 kcal (2) G-P(sol) polarization free energy of solvation -75.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds