Wall clock time and date at job start Tue Mar 31 2020 20:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46963 * 2 1 4 4 C 1.52999 * 109.46893 * 240.00604 * 2 1 3 5 5 N 1.46499 * 109.47260 * 120.00518 * 2 1 3 6 6 C 1.34806 * 126.59580 * 74.99663 * 5 2 1 7 7 C 1.36596 * 106.83749 * 179.75462 * 6 5 2 8 8 C 1.47527 * 125.76990 * 180.26004 * 7 6 5 9 9 O 1.21592 * 120.00232 * 0.02562 * 8 7 6 10 10 N 1.34776 * 120.00039 * 180.02562 * 8 7 6 11 11 C 1.47022 * 125.64876 * 359.69703 * 10 8 7 12 12 C 1.54313 * 107.27914 * 180.96223 * 11 10 8 13 13 C 1.55162 * 102.85959 * 22.53086 * 12 11 10 14 14 H 1.08997 * 111.04097 * 82.38688 * 13 12 11 15 15 C 1.53002 * 111.00280 * 206.22744 * 13 12 11 16 16 C 1.52999 * 109.47232 * 178.64768 * 15 13 12 17 17 N 1.46498 * 109.47173 * 180.02562 * 16 15 13 18 18 C 1.36936 * 119.99692 * 179.97438 * 17 16 15 19 19 H 1.08001 * 120.00278 * 0.02562 * 18 17 16 20 20 C 1.38813 * 119.99750 * 179.97438 * 18 17 16 21 21 N 1.31619 * 120.00075 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00062 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47507 * 90.00163 * 22 20 18 24 24 H 1.48500 * 109.47386 * 210.00384 * 22 20 18 25 25 H 1.48505 * 109.47218 * 330.00161 * 22 20 18 26 26 C 1.47427 * 125.64782 * 180.02562 * 10 8 7 27 27 N 1.34399 * 108.45911 * 0.24576 * 7 6 5 28 28 N 1.28753 * 109.52471 * 359.97438 * 27 7 6 29 29 H 1.09007 * 109.47095 * 299.99563 * 1 2 3 30 30 H 1.08993 * 109.47520 * 59.99488 * 1 2 3 31 31 H 1.09001 * 109.46902 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47107 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.47575 * 300.00614 * 3 2 1 34 34 H 1.09007 * 109.46858 * 60.00292 * 3 2 1 35 35 H 1.09008 * 109.47013 * 299.99579 * 4 2 1 36 36 H 1.08997 * 109.47466 * 59.99281 * 4 2 1 37 37 H 1.09000 * 109.47132 * 179.97438 * 4 2 1 38 38 H 1.08002 * 126.58390 * 0.02761 * 6 5 2 39 39 H 1.09003 * 109.88548 * 300.51375 * 11 10 8 40 40 H 1.09001 * 109.87957 * 61.67759 * 11 10 8 41 41 H 1.08992 * 110.92961 * 264.11653 * 12 11 10 42 42 H 1.09006 * 110.74135 * 140.85395 * 12 11 10 43 43 H 1.08992 * 109.47021 * 298.64988 * 15 13 12 44 44 H 1.09000 * 109.46888 * 58.64974 * 15 13 12 45 45 H 1.09007 * 109.46908 * 299.99969 * 16 15 13 46 46 H 1.09001 * 109.47127 * 59.99504 * 16 15 13 47 47 H 0.96997 * 120.00120 * 0.02562 * 17 16 15 48 48 H 0.97003 * 120.00115 * 180.02562 * 21 20 18 49 49 H 1.09003 * 110.36774 * 274.67443 * 26 10 8 50 50 H 1.08997 * 110.36450 * 36.88892 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 7 2.0184 -0.6907 1.1961 6 6 2.0221 -2.0216 1.4103 7 6 2.5685 -2.2219 2.6462 8 6 2.7769 -3.5303 3.2951 9 8 2.4514 -4.5520 2.7220 10 7 3.3282 -3.5931 4.5234 11 6 3.7717 -2.4421 5.3234 12 6 4.3554 -2.9965 6.6399 13 6 4.7331 -4.4536 6.2635 14 1 5.7023 -4.4907 5.7663 15 6 4.7173 -5.3601 7.4961 16 6 5.0610 -6.7919 7.0806 17 7 5.0452 -7.6599 8.2607 18 6 5.3244 -8.9944 8.1327 19 1 5.5566 -9.4069 7.1620 20 6 5.3100 -9.8167 9.2509 21 7 5.0276 -9.3139 10.4340 22 14 5.6916 -11.6370 9.0766 23 1 7.1511 -11.8550 9.2424 24 1 4.9559 -12.3989 10.1176 25 1 5.2710 -12.1043 7.7312 26 6 3.5927 -4.8277 5.2844 27 7 2.8843 -1.0255 3.1708 28 7 2.5694 -0.0943 2.3392 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6766 1.9563 0.8901 35 1 1.6766 -1.7489 -1.2494 36 1 1.6766 -0.2073 -2.1393 37 1 3.1300 -0.7207 -1.2496 38 1 1.6660 -2.7837 0.7329 39 1 4.5370 -1.8866 4.7813 40 1 2.9235 -1.7928 5.5407 41 1 3.6076 -2.9846 7.4328 42 1 5.2400 -2.4334 6.9374 43 1 5.4527 -5.0047 8.2178 44 1 3.7257 -5.3411 7.9483 45 1 4.3254 -7.1472 6.3588 46 1 6.0525 -6.8109 6.6282 47 1 4.8363 -7.2895 9.1324 48 1 5.0179 -9.8885 11.2155 49 1 2.7031 -5.1310 5.8365 50 1 3.9124 -5.6254 4.6139 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672806407.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:12 Heat of formation + Delta-G solvation = 66.127158 kcal Electronic energy + Delta-G solvation = -28477.911629 eV Core-core repulsion = 24542.451230 eV Total energy + Delta-G solvation = -3935.460400 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.58602 -39.89922 -37.96181 -37.60615 -35.07122 -33.02623 -32.33351 -31.30574 -30.70434 -29.39810 -28.23290 -28.16866 -27.12322 -24.79653 -24.06568 -23.22268 -22.41980 -21.20989 -20.89197 -20.03586 -19.35056 -17.61915 -17.04426 -16.72540 -16.49656 -16.12817 -15.52389 -15.04735 -14.92248 -14.75837 -14.59676 -14.41645 -13.79936 -13.45320 -13.35723 -13.26957 -13.16638 -13.03604 -12.94356 -12.84657 -12.67302 -12.52274 -12.44269 -12.15428 -12.08863 -11.75855 -11.58739 -11.44551 -11.15014 -10.97560 -10.78029 -10.67343 -10.55234 -10.37482 -10.27518 -10.15732 -9.91955 -9.60887 -9.56893 -8.80279 -8.61464 -6.84891 -5.70292 -2.98427 0.84946 1.51881 1.59752 2.88844 3.17425 3.48512 3.53424 3.55452 3.65442 3.90945 3.93928 4.05499 4.27435 4.56722 4.62984 4.64939 4.71278 4.73640 4.79153 4.88344 4.90506 4.93319 4.95306 5.06031 5.08130 5.27892 5.30994 5.35239 5.41345 5.48673 5.60030 5.61747 5.64972 5.75276 5.83274 5.93074 5.99855 6.01299 6.07540 6.20147 6.25767 6.34002 6.44608 6.49328 6.92605 6.96688 7.43521 7.66402 7.76770 8.06918 8.49075 9.59941 10.18956 10.53467 11.52779 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.028980 B = 0.001803 C = 0.001730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.935222 B =15526.983557 C =16185.418757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.169 3.831 3 C -0.149 4.149 4 C -0.163 4.163 5 N -0.351 5.351 6 C 0.093 3.907 7 C -0.095 4.095 8 C 0.614 3.386 9 O -0.541 6.541 10 N -0.603 5.603 11 C 0.111 3.889 12 C -0.131 4.131 13 C -0.094 4.094 14 H 0.085 0.915 15 C -0.114 4.114 16 C 0.150 3.850 17 N -0.734 5.734 18 C -0.237 4.237 19 H 0.070 0.930 20 C -0.016 4.016 21 N -0.935 5.935 22 Si 0.907 3.093 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.282 1.282 26 C 0.111 3.889 27 N -0.203 5.203 28 N -0.066 5.066 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.070 0.930 38 H 0.201 0.799 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.069 0.931 44 H 0.066 0.934 45 H 0.020 0.980 46 H 0.018 0.982 47 H 0.383 0.617 48 H 0.254 0.746 49 H 0.075 0.925 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.442 26.117 -24.023 36.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.087 3.913 3 C -0.206 4.206 4 C -0.222 4.222 5 N -0.137 5.137 6 C -0.064 4.064 7 C -0.235 4.235 8 C 0.401 3.599 9 O -0.418 6.418 10 N -0.335 5.335 11 C -0.012 4.012 12 C -0.169 4.169 13 C -0.114 4.114 14 H 0.103 0.897 15 C -0.152 4.152 16 C 0.023 3.977 17 N -0.378 5.378 18 C -0.368 4.368 19 H 0.088 0.912 20 C -0.212 4.212 21 N -0.584 5.584 22 Si 0.738 3.262 23 H -0.218 1.218 24 H -0.218 1.218 25 H -0.208 1.208 26 C -0.010 4.010 27 N -0.077 5.077 28 N -0.046 5.046 29 H 0.088 0.912 30 H 0.104 0.896 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.107 0.893 37 H 0.089 0.911 38 H 0.217 0.783 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.097 0.903 42 H 0.101 0.899 43 H 0.087 0.913 44 H 0.084 0.916 45 H 0.038 0.962 46 H 0.036 0.964 47 H 0.217 0.783 48 H 0.064 0.936 49 H 0.093 0.907 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.242 26.766 -23.838 36.778 hybrid contribution -0.186 -1.746 -0.307 1.782 sum -8.428 25.021 -24.145 35.778 Atomic orbital electron populations 1.22295 0.91798 1.03771 1.04104 1.21107 0.95244 0.94145 0.80827 1.21995 1.02575 0.92181 1.03868 1.22309 1.02748 1.01350 0.95763 1.50826 1.42241 1.05188 1.15473 1.23223 0.98292 0.86986 0.97888 1.21394 1.12609 0.93686 0.95772 1.16359 0.77709 0.85951 0.79900 1.90826 1.52444 1.34636 1.63871 1.48267 1.59918 1.09618 1.15743 1.22089 0.99674 0.88020 0.91434 1.22775 1.01525 0.96116 0.96436 1.22344 0.98309 0.94400 0.96352 0.89687 1.21681 1.02348 0.95396 0.95811 1.20694 0.97548 0.88393 0.91073 1.42369 1.84606 1.05689 1.05161 1.19258 1.39001 0.84801 0.93782 0.91188 1.24741 1.02838 0.98165 0.95442 1.69663 1.55962 1.34677 0.98072 0.86184 0.77740 0.85308 0.76953 1.21776 1.21802 1.20764 1.22450 0.98438 0.86478 0.93662 1.74744 1.12837 0.97940 1.22141 1.81958 1.15688 1.17171 0.89754 0.91185 0.89576 0.91312 0.91200 0.90100 0.90592 0.91065 0.89331 0.91088 0.78262 0.90865 0.90964 0.90295 0.89922 0.91279 0.91574 0.96229 0.96443 0.78332 0.93595 0.90715 0.89869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.53 8.74 37.16 0.32 -0.21 16 2 C 0.17 0.76 1.25 -131.82 -0.16 0.59 16 3 C -0.15 -0.58 8.12 37.16 0.30 -0.28 16 4 C -0.16 -0.47 8.30 37.16 0.31 -0.16 16 5 N -0.35 -2.83 3.44 -48.36 -0.17 -3.00 16 6 C 0.09 0.85 10.43 -16.84 -0.18 0.67 16 7 C -0.10 -1.16 6.85 -83.55 -0.57 -1.73 16 8 C 0.61 8.89 7.85 -12.47 -0.10 8.79 16 9 O -0.54 -9.20 17.12 5.28 0.09 -9.10 16 10 N -0.60 -8.24 3.33 -171.76 -0.57 -8.81 16 11 C 0.11 1.26 5.51 -3.07 -0.02 1.25 16 12 C -0.13 -1.41 6.42 -24.90 -0.16 -1.57 16 13 C -0.09 -1.23 3.07 -88.48 -0.27 -1.50 16 14 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 15 C -0.11 -1.81 4.84 -26.73 -0.13 -1.94 16 16 C 0.15 3.09 6.11 -4.04 -0.02 3.06 16 17 N -0.73 -19.20 5.60 -59.91 -0.34 -19.53 16 18 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 19 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 20 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 21 N -0.93 -28.89 13.06 55.49 0.72 -28.16 16 22 Si 0.91 22.99 29.55 -169.99 -5.02 17.96 16 23 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 24 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 25 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 26 C 0.11 1.58 5.57 -2.54 -0.01 1.57 16 27 N -0.20 -2.47 9.78 32.85 0.32 -2.15 16 28 N -0.07 -0.72 12.91 60.35 0.78 0.06 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 31 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 34 H 0.08 0.38 8.06 -51.93 -0.42 -0.04 16 35 H 0.07 0.18 7.44 -51.92 -0.39 -0.20 16 36 H 0.09 0.08 8.14 -51.93 -0.42 -0.34 16 37 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 38 H 0.20 1.30 7.63 -52.49 -0.40 0.90 16 39 H 0.07 0.83 7.63 -51.93 -0.40 0.43 16 40 H 0.07 0.82 7.72 -51.93 -0.40 0.41 16 41 H 0.08 0.83 8.04 -51.93 -0.42 0.41 16 42 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.07 1.06 8.10 -51.93 -0.42 0.64 16 45 H 0.02 0.41 7.46 -51.92 -0.39 0.03 16 46 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 47 H 0.38 10.43 7.67 -40.82 -0.31 10.12 16 48 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 49 H 0.07 1.10 8.00 -51.93 -0.42 0.68 16 50 H 0.08 1.28 7.96 -51.93 -0.41 0.87 16 LS Contribution 406.06 15.07 6.12 6.12 Total: -1.00 -35.34 406.06 -7.57 -42.91 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -8.57 Total: 2.74 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: -0.94 Total: 0.96 kcal Atomic # 7 Polarization: -62.34 SS G_CDS: 0.75 Total: -61.59 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: 0.09 Total: -9.10 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -5.02 Total: 17.96 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -35.34 -7.57 -42.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672806407.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.039 kcal (2) G-P(sol) polarization free energy of solvation -35.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds