Wall clock time and date at job start Tue Mar 31 2020 20:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46963 * 2 1 4 4 C 1.52999 * 109.46893 * 240.00604 * 2 1 3 5 5 N 1.46499 * 109.47260 * 120.00518 * 2 1 3 6 6 C 1.34806 * 126.59580 * 74.99663 * 5 2 1 7 7 C 1.36596 * 106.83749 * 179.75462 * 6 5 2 8 8 C 1.47527 * 125.76990 * 180.26004 * 7 6 5 9 9 O 1.21592 * 120.00232 * 0.02562 * 8 7 6 10 10 N 1.34776 * 120.00039 * 180.02562 * 8 7 6 11 11 C 1.47022 * 125.64876 * 359.69703 * 10 8 7 12 12 C 1.54313 * 107.27914 * 180.96223 * 11 10 8 13 13 C 1.55162 * 102.85959 * 22.53086 * 12 11 10 14 14 H 1.08997 * 111.04097 * 82.38688 * 13 12 11 15 15 C 1.53002 * 111.00280 * 206.22744 * 13 12 11 16 16 C 1.52999 * 109.47232 * 178.64768 * 15 13 12 17 17 N 1.46498 * 109.47173 * 180.02562 * 16 15 13 18 18 C 1.36936 * 119.99692 * 179.97438 * 17 16 15 19 19 H 1.08001 * 120.00278 * 0.02562 * 18 17 16 20 20 C 1.38813 * 119.99750 * 179.97438 * 18 17 16 21 21 N 1.31619 * 120.00075 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00062 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47507 * 90.00163 * 22 20 18 24 24 H 1.48500 * 109.47386 * 210.00384 * 22 20 18 25 25 H 1.48505 * 109.47218 * 330.00161 * 22 20 18 26 26 C 1.47427 * 125.64782 * 180.02562 * 10 8 7 27 27 N 1.34399 * 108.45911 * 0.24576 * 7 6 5 28 28 N 1.28753 * 109.52471 * 359.97438 * 27 7 6 29 29 H 1.09007 * 109.47095 * 299.99563 * 1 2 3 30 30 H 1.08993 * 109.47520 * 59.99488 * 1 2 3 31 31 H 1.09001 * 109.46902 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47107 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.47575 * 300.00614 * 3 2 1 34 34 H 1.09007 * 109.46858 * 60.00292 * 3 2 1 35 35 H 1.09008 * 109.47013 * 299.99579 * 4 2 1 36 36 H 1.08997 * 109.47466 * 59.99281 * 4 2 1 37 37 H 1.09000 * 109.47132 * 179.97438 * 4 2 1 38 38 H 1.08002 * 126.58390 * 0.02761 * 6 5 2 39 39 H 1.09003 * 109.88548 * 300.51375 * 11 10 8 40 40 H 1.09001 * 109.87957 * 61.67759 * 11 10 8 41 41 H 1.08992 * 110.92961 * 264.11653 * 12 11 10 42 42 H 1.09006 * 110.74135 * 140.85395 * 12 11 10 43 43 H 1.08992 * 109.47021 * 298.64988 * 15 13 12 44 44 H 1.09000 * 109.46888 * 58.64974 * 15 13 12 45 45 H 1.09007 * 109.46908 * 299.99969 * 16 15 13 46 46 H 1.09001 * 109.47127 * 59.99504 * 16 15 13 47 47 H 0.96997 * 120.00120 * 0.02562 * 17 16 15 48 48 H 0.97003 * 120.00115 * 180.02562 * 21 20 18 49 49 H 1.09003 * 110.36774 * 274.67443 * 26 10 8 50 50 H 1.08997 * 110.36450 * 36.88892 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 7 2.0184 -0.6907 1.1961 6 6 2.0221 -2.0216 1.4103 7 6 2.5685 -2.2219 2.6462 8 6 2.7769 -3.5303 3.2951 9 8 2.4514 -4.5520 2.7220 10 7 3.3282 -3.5931 4.5234 11 6 3.7717 -2.4421 5.3234 12 6 4.3554 -2.9965 6.6399 13 6 4.7331 -4.4536 6.2635 14 1 5.7023 -4.4907 5.7663 15 6 4.7173 -5.3601 7.4961 16 6 5.0610 -6.7919 7.0806 17 7 5.0452 -7.6599 8.2607 18 6 5.3244 -8.9944 8.1327 19 1 5.5566 -9.4069 7.1620 20 6 5.3100 -9.8167 9.2509 21 7 5.0276 -9.3139 10.4340 22 14 5.6916 -11.6370 9.0766 23 1 7.1511 -11.8550 9.2424 24 1 4.9559 -12.3989 10.1176 25 1 5.2710 -12.1043 7.7312 26 6 3.5927 -4.8277 5.2844 27 7 2.8843 -1.0255 3.1708 28 7 2.5694 -0.0943 2.3392 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6766 1.9563 0.8901 35 1 1.6766 -1.7489 -1.2494 36 1 1.6766 -0.2073 -2.1393 37 1 3.1300 -0.7207 -1.2496 38 1 1.6660 -2.7837 0.7329 39 1 4.5370 -1.8866 4.7813 40 1 2.9235 -1.7928 5.5407 41 1 3.6076 -2.9846 7.4328 42 1 5.2400 -2.4334 6.9374 43 1 5.4527 -5.0047 8.2178 44 1 3.7257 -5.3411 7.9483 45 1 4.3254 -7.1472 6.3588 46 1 6.0525 -6.8109 6.6282 47 1 4.8363 -7.2895 9.1324 48 1 5.0179 -9.8885 11.2155 49 1 2.7031 -5.1310 5.8365 50 1 3.9124 -5.6254 4.6139 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672806407.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:11 Heat of formation + Delta-G solvation = 42.702252 kcal Electronic energy + Delta-G solvation = -28478.927410 eV Core-core repulsion = 24542.451230 eV Total energy + Delta-G solvation = -3936.476180 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.35347 -40.96925 -38.89373 -38.29803 -36.83153 -34.57720 -33.10598 -32.75081 -31.77465 -30.70026 -28.73044 -28.43354 -28.32348 -26.24406 -24.82244 -24.74675 -23.47661 -22.62290 -21.60069 -21.21807 -20.22826 -19.13224 -18.33945 -17.52784 -17.45993 -17.07031 -16.64000 -16.43137 -15.96996 -15.72894 -15.35221 -15.21926 -15.11594 -15.04284 -14.79644 -14.33510 -14.03804 -13.87081 -13.64650 -13.42868 -13.38012 -13.25446 -13.17898 -13.00564 -12.96123 -12.80597 -12.78767 -12.46994 -12.39788 -12.24884 -12.14289 -11.99312 -11.93696 -11.68142 -11.54816 -11.38345 -11.28988 -11.28045 -10.91433 -10.41760 -9.70035 -8.98949 -7.94906 -5.23650 0.11199 0.58563 1.00564 1.47238 1.49279 1.57918 1.87121 2.14802 2.56504 3.05199 3.21402 3.38416 3.47382 3.63551 3.64249 3.72018 3.75962 3.81583 3.89990 4.16745 4.18717 4.32261 4.33958 4.46542 4.51541 4.55936 4.58427 4.59127 4.66344 4.68817 4.74457 4.78227 4.78721 4.80388 4.88858 4.96060 5.00198 5.06443 5.13046 5.17915 5.19524 5.25958 5.31722 5.40292 5.48422 5.50684 5.52232 6.28083 6.37693 6.79145 7.03074 7.33998 8.10714 8.34282 9.28596 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.028980 B = 0.001803 C = 0.001730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.935222 B =15526.983557 C =16185.418757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.159 3.841 3 C -0.147 4.147 4 C -0.161 4.161 5 N -0.338 5.338 6 C 0.107 3.893 7 C -0.121 4.121 8 C 0.610 3.390 9 O -0.576 6.576 10 N -0.606 5.606 11 C 0.115 3.885 12 C -0.120 4.120 13 C -0.084 4.084 14 H 0.090 0.910 15 C -0.099 4.099 16 C 0.148 3.852 17 N -0.747 5.747 18 C -0.249 4.249 19 H 0.073 0.927 20 C -0.076 4.076 21 N -0.968 5.968 22 Si 0.974 3.026 23 H -0.285 1.285 24 H -0.293 1.293 25 H -0.272 1.272 26 C 0.111 3.889 27 N -0.217 5.217 28 N -0.082 5.082 29 H 0.055 0.945 30 H 0.113 0.887 31 H 0.069 0.931 32 H 0.057 0.943 33 H 0.109 0.891 34 H 0.062 0.938 35 H 0.075 0.925 36 H 0.114 0.886 37 H 0.060 0.940 38 H 0.225 0.775 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.084 0.916 42 H 0.105 0.895 43 H 0.074 0.926 44 H 0.064 0.936 45 H 0.016 0.984 46 H 0.019 0.981 47 H 0.375 0.625 48 H 0.252 0.748 49 H 0.067 0.933 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.707 27.363 -25.967 38.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.078 3.922 3 C -0.204 4.204 4 C -0.219 4.219 5 N -0.123 5.123 6 C -0.052 4.052 7 C -0.260 4.260 8 C 0.398 3.602 9 O -0.456 6.456 10 N -0.337 5.337 11 C -0.007 4.007 12 C -0.158 4.158 13 C -0.103 4.103 14 H 0.108 0.892 15 C -0.137 4.137 16 C 0.022 3.978 17 N -0.390 5.390 18 C -0.380 4.380 19 H 0.091 0.909 20 C -0.268 4.268 21 N -0.619 5.619 22 Si 0.803 3.197 23 H -0.212 1.212 24 H -0.219 1.219 25 H -0.197 1.197 26 C -0.011 4.011 27 N -0.091 5.091 28 N -0.061 5.061 29 H 0.074 0.926 30 H 0.132 0.868 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.128 0.872 34 H 0.081 0.919 35 H 0.094 0.906 36 H 0.133 0.867 37 H 0.079 0.921 38 H 0.241 0.759 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.103 0.897 42 H 0.123 0.877 43 H 0.093 0.907 44 H 0.083 0.917 45 H 0.034 0.966 46 H 0.037 0.963 47 H 0.207 0.793 48 H 0.061 0.939 49 H 0.085 0.915 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.498 28.073 -25.817 39.075 hybrid contribution -0.149 -2.042 0.169 2.055 sum -8.647 26.031 -25.648 37.553 Atomic orbital electron populations 1.22317 0.90505 1.04061 1.04775 1.21595 0.96188 0.94379 0.80011 1.22019 1.01832 0.91948 1.04637 1.22350 1.02126 1.01820 0.95641 1.51177 1.40699 1.04927 1.15541 1.23560 0.96700 0.87803 0.97100 1.21242 1.14863 0.92824 0.97078 1.16702 0.77087 0.86487 0.79901 1.90790 1.54041 1.35957 1.64763 1.48365 1.59605 1.09964 1.15794 1.22150 0.99861 0.87312 0.91362 1.22769 1.02582 0.94243 0.96167 1.22201 0.98078 0.95339 0.94726 0.89169 1.21511 1.02229 0.92919 0.97038 1.20868 0.97370 0.90313 0.89287 1.42592 1.84483 1.05614 1.06330 1.19650 1.38182 0.86289 0.93922 0.90932 1.25584 1.03428 1.02616 0.95215 1.69814 1.57386 1.36058 0.98650 0.85127 0.77482 0.79947 0.77129 1.21202 1.21948 1.19662 1.22359 0.98561 0.86611 0.93612 1.74703 1.13466 0.97986 1.22923 1.81879 1.16322 1.17272 0.90675 0.92584 0.86830 0.91224 0.92353 0.87214 0.91939 0.90575 0.86698 0.92099 0.75855 0.90470 0.90673 0.89689 0.87665 0.90748 0.91744 0.96602 0.96349 0.79326 0.93947 0.91500 0.91636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.67 8.74 71.98 0.63 -0.05 16 2 C 0.16 1.11 1.25 3.60 0.00 1.11 16 3 C -0.15 -0.90 8.12 71.98 0.58 -0.32 16 4 C -0.16 -0.50 8.30 71.98 0.60 0.10 16 5 N -0.34 -5.07 3.44 -306.91 -1.06 -6.13 16 6 C 0.11 1.84 10.43 83.85 0.87 2.72 16 7 C -0.12 -2.91 6.85 40.82 0.28 -2.63 16 8 C 0.61 17.92 7.85 86.69 0.68 18.60 16 9 O -0.58 -20.06 17.12 -4.01 -0.07 -20.12 16 10 N -0.61 -16.58 3.33 -815.59 -2.71 -19.29 16 11 C 0.12 2.52 5.51 86.73 0.48 3.00 16 12 C -0.12 -2.36 6.42 31.78 0.20 -2.16 16 13 C -0.08 -2.11 3.07 -9.40 -0.03 -2.14 16 14 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 15 C -0.10 -3.08 4.84 30.59 0.15 -2.93 16 16 C 0.15 6.09 6.11 86.38 0.53 6.62 16 17 N -0.75 -39.48 5.60 -343.45 -1.92 -41.40 16 18 C -0.25 -14.47 9.99 84.03 0.84 -13.63 16 19 H 0.07 4.09 7.83 -2.91 -0.02 4.07 16 20 C -0.08 -4.51 5.50 84.86 0.47 -4.04 16 21 N -0.97 -60.49 13.06 21.65 0.28 -60.20 16 22 Si 0.97 47.41 29.55 68.60 2.03 49.44 16 23 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 24 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 25 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 26 C 0.11 3.18 5.57 86.85 0.48 3.67 16 27 N -0.22 -5.24 9.78 -49.99 -0.49 -5.73 16 28 N -0.08 -1.74 12.91 37.02 0.48 -1.26 16 29 H 0.06 0.42 8.14 -2.38 -0.02 0.40 16 30 H 0.11 -0.12 8.14 -2.39 -0.02 -0.14 16 31 H 0.07 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.11 0.03 8.14 -2.39 -0.02 0.01 16 34 H 0.06 0.57 8.06 -2.38 -0.02 0.55 16 35 H 0.08 0.19 7.44 -2.38 -0.02 0.17 16 36 H 0.11 -0.21 8.14 -2.39 -0.02 -0.23 16 37 H 0.06 0.34 8.14 -2.39 -0.02 0.33 16 38 H 0.23 2.57 7.63 -2.91 -0.02 2.55 16 39 H 0.08 1.66 7.63 -2.39 -0.02 1.64 16 40 H 0.07 1.63 7.72 -2.39 -0.02 1.61 16 41 H 0.08 1.62 8.04 -2.39 -0.02 1.60 16 42 H 0.10 1.66 8.14 -2.38 -0.02 1.64 16 43 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 44 H 0.06 2.04 8.10 -2.39 -0.02 2.02 16 45 H 0.02 0.67 7.46 -2.38 -0.02 0.66 16 46 H 0.02 0.76 8.14 -2.39 -0.02 0.75 16 47 H 0.37 20.72 7.67 -92.71 -0.71 20.01 16 48 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 49 H 0.07 2.01 8.00 -2.39 -0.02 1.99 16 50 H 0.07 2.10 7.96 -2.39 -0.02 2.08 16 Total: -1.00 -77.22 406.06 3.52 -73.70 By element: Atomic # 1 Polarization: 22.86 SS G_CDS: 0.21 Total: 23.07 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: 6.77 Total: 7.93 kcal Atomic # 7 Polarization: -128.60 SS G_CDS: -5.42 Total: -134.02 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: -0.07 Total: -20.12 kcal Atomic # 14 Polarization: 47.41 SS G_CDS: 2.03 Total: 49.44 kcal Total: -77.22 3.52 -73.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672806407.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.403 kcal (2) G-P(sol) polarization free energy of solvation -77.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds