Wall clock time and date at job start Tue Mar 31 2020 20:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47113 * 2 1 4 4 C 1.53004 * 109.47157 * 240.00079 * 2 1 3 5 5 N 1.46504 * 109.47074 * 119.99853 * 2 1 3 6 6 C 1.34810 * 126.59305 * 75.27858 * 5 2 1 7 7 C 1.36603 * 106.83659 * 180.10458 * 6 5 2 8 8 C 1.47519 * 125.77026 * 179.89711 * 7 6 5 9 9 O 1.21605 * 120.00026 * 359.71127 * 8 7 6 10 10 N 1.34774 * 120.00257 * 179.71790 * 8 7 6 11 11 C 1.47026 * 125.64437 * 0.03737 * 10 8 7 12 12 C 1.54376 * 107.28470 * 178.87461 * 11 10 8 13 13 C 1.55154 * 102.92392 * 337.86069 * 12 11 10 14 14 H 1.08996 * 111.00484 * 277.36492 * 13 12 11 15 15 C 1.52992 * 111.00598 * 153.54525 * 13 12 11 16 16 C 1.53004 * 109.47319 * 178.17997 * 15 13 12 17 17 N 1.46499 * 109.47198 * 180.02562 * 16 15 13 18 18 C 1.36931 * 120.00122 * 180.02562 * 17 16 15 19 19 H 1.08002 * 120.00098 * 0.02562 * 18 17 16 20 20 C 1.38812 * 120.00429 * 180.02562 * 18 17 16 21 21 N 1.31624 * 119.99535 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00187 * 180.27849 * 20 18 17 23 23 H 1.48501 * 109.46922 * 269.71949 * 22 20 18 24 24 H 1.48496 * 109.47354 * 29.72145 * 22 20 18 25 25 H 1.48501 * 109.47428 * 149.72253 * 22 20 18 26 26 C 1.47421 * 125.65152 * 179.97438 * 10 8 7 27 27 N 1.34398 * 108.45898 * 359.63157 * 7 6 5 28 28 N 1.28768 * 109.52467 * 0.22694 * 27 7 6 29 29 H 1.08999 * 109.46991 * 300.00253 * 1 2 3 30 30 H 1.08998 * 109.47608 * 60.00141 * 1 2 3 31 31 H 1.08997 * 109.47125 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47011 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.46621 * 299.99879 * 3 2 1 34 34 H 1.08999 * 109.47399 * 59.99996 * 3 2 1 35 35 H 1.09006 * 109.46640 * 299.99468 * 4 2 1 36 36 H 1.08998 * 109.47041 * 59.99433 * 4 2 1 37 37 H 1.09000 * 109.47098 * 179.97438 * 4 2 1 38 38 H 1.07990 * 126.58360 * 359.96209 * 6 5 2 39 39 H 1.08998 * 109.88432 * 298.32029 * 11 10 8 40 40 H 1.08992 * 109.88400 * 59.33544 * 11 10 8 41 41 H 1.08998 * 110.75118 * 219.48640 * 12 11 10 42 42 H 1.09001 * 110.70134 * 96.20622 * 12 11 10 43 43 H 1.09000 * 109.47364 * 58.18017 * 15 13 12 44 44 H 1.08998 * 109.47610 * 298.18079 * 15 13 12 45 45 H 1.08995 * 109.46638 * 60.00097 * 16 15 13 46 46 H 1.08998 * 109.46846 * 300.00550 * 16 15 13 47 47 H 0.97001 * 119.99790 * 359.97438 * 17 16 15 48 48 H 0.97005 * 119.99717 * 180.02562 * 21 20 18 49 49 H 1.08998 * 110.36669 * 85.32391 * 26 10 8 50 50 H 1.08996 * 110.45856 * 323.04893 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0183 -0.6906 1.1962 6 6 2.0269 -2.0219 1.4084 7 6 2.5638 -2.2214 2.6485 8 6 2.7664 -3.5293 3.3002 9 8 2.4390 -4.5510 2.7278 10 7 3.3142 -3.5918 4.5300 11 6 3.7527 -2.4403 5.3322 12 6 4.2850 -2.9911 6.6725 13 6 3.5955 -4.3771 6.7765 14 1 2.5841 -4.2816 7.1716 15 6 4.4252 -5.3399 7.6280 16 6 3.6928 -6.6782 7.7448 17 7 4.4871 -7.6000 8.5607 18 6 4.0292 -8.8673 8.8041 19 1 3.0826 -9.1875 8.3943 20 6 4.7815 -9.7406 9.5777 21 7 5.9353 -9.3505 10.0767 22 14 4.1604 -11.4719 9.9032 23 1 3.3437 -11.4798 11.1434 24 1 3.3276 -11.9224 8.7592 25 1 5.3162 -12.3901 10.0659 26 6 3.5717 -4.8259 5.2942 27 7 2.8818 -1.0252 3.1721 28 7 2.5721 -0.0943 2.3380 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.6767 -1.7490 -1.2492 36 1 1.6766 -0.2075 -2.1392 37 1 3.1300 -0.7208 -1.2495 38 1 1.6745 -2.7841 0.7294 39 1 4.5456 -1.9051 4.8099 40 1 2.9108 -1.7719 5.5123 41 1 3.9858 -2.3483 7.5003 42 1 5.3690 -3.1011 6.6406 43 1 4.5675 -4.9157 8.6220 44 1 5.3959 -5.4968 7.1577 45 1 3.5506 -7.1024 6.7510 46 1 2.7221 -6.5213 8.2152 47 1 5.3377 -7.3128 8.9279 48 1 6.4612 -9.9609 10.6170 49 1 4.5340 -5.2529 5.0120 50 1 2.7734 -5.5495 5.1296 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672806408.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:17 Heat of formation + Delta-G solvation = 66.060494 kcal Electronic energy + Delta-G solvation = -28464.474591 eV Core-core repulsion = 24529.011300 eV Total energy + Delta-G solvation = -3935.463290 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.58626 -39.89756 -37.96081 -37.60381 -35.07238 -33.02770 -32.33396 -31.30798 -30.70295 -29.39801 -28.23535 -28.16969 -27.13680 -24.79111 -24.06725 -23.22304 -22.41340 -21.19945 -20.89418 -20.05639 -19.36101 -17.62008 -17.04482 -16.73316 -16.47480 -16.14031 -15.51971 -15.05280 -14.92777 -14.74451 -14.58422 -14.43674 -13.79806 -13.46660 -13.35902 -13.27253 -13.15790 -13.06060 -12.93849 -12.84077 -12.66606 -12.53548 -12.43947 -12.15234 -12.08914 -11.75877 -11.58682 -11.44664 -11.14939 -10.97574 -10.78151 -10.67557 -10.55032 -10.38348 -10.27356 -10.15782 -9.92112 -9.60929 -9.57093 -8.80336 -8.61829 -6.84932 -5.70338 -2.98458 0.84721 1.51582 1.59563 2.88534 3.17087 3.48466 3.53383 3.55435 3.65271 3.90674 3.93854 4.05328 4.27267 4.56532 4.62898 4.64891 4.71070 4.73482 4.78925 4.88186 4.90392 4.93255 4.95274 5.05915 5.07966 5.27749 5.30768 5.34964 5.41233 5.48415 5.60131 5.61630 5.65069 5.75114 5.83332 5.92967 5.99602 6.00880 6.07339 6.19753 6.25706 6.34349 6.44542 6.49401 6.92673 6.96630 7.43191 7.66130 7.76687 8.06581 8.49048 9.59893 10.18915 10.53435 11.52737 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.029432 B = 0.001793 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.120507 B =15611.609587 C =16247.695657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.169 3.831 3 C -0.149 4.149 4 C -0.164 4.164 5 N -0.351 5.351 6 C 0.093 3.907 7 C -0.095 4.095 8 C 0.614 3.386 9 O -0.541 6.541 10 N -0.603 5.603 11 C 0.110 3.890 12 C -0.130 4.130 13 C -0.094 4.094 14 H 0.085 0.915 15 C -0.114 4.114 16 C 0.151 3.849 17 N -0.734 5.734 18 C -0.237 4.237 19 H 0.070 0.930 20 C -0.016 4.016 21 N -0.935 5.935 22 Si 0.907 3.093 23 H -0.290 1.290 24 H -0.282 1.282 25 H -0.292 1.292 26 C 0.111 3.889 27 N -0.203 5.203 28 N -0.066 5.066 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.070 0.930 38 H 0.201 0.799 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.069 0.931 44 H 0.066 0.934 45 H 0.020 0.980 46 H 0.018 0.982 47 H 0.383 0.617 48 H 0.254 0.746 49 H 0.074 0.926 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.212 26.065 -23.905 36.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.087 3.913 3 C -0.206 4.206 4 C -0.222 4.222 5 N -0.137 5.137 6 C -0.064 4.064 7 C -0.235 4.235 8 C 0.401 3.599 9 O -0.418 6.418 10 N -0.335 5.335 11 C -0.012 4.012 12 C -0.168 4.168 13 C -0.114 4.114 14 H 0.103 0.897 15 C -0.152 4.152 16 C 0.023 3.977 17 N -0.378 5.378 18 C -0.368 4.368 19 H 0.088 0.912 20 C -0.212 4.212 21 N -0.584 5.584 22 Si 0.738 3.262 23 H -0.218 1.218 24 H -0.208 1.208 25 H -0.218 1.218 26 C -0.010 4.010 27 N -0.077 5.077 28 N -0.046 5.046 29 H 0.088 0.912 30 H 0.104 0.896 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.107 0.893 37 H 0.089 0.911 38 H 0.217 0.783 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.101 0.899 42 H 0.097 0.903 43 H 0.087 0.913 44 H 0.084 0.916 45 H 0.038 0.962 46 H 0.036 0.964 47 H 0.217 0.783 48 H 0.064 0.936 49 H 0.093 0.907 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -9.137 26.724 -23.660 36.844 hybrid contribution -0.334 -1.726 -0.225 1.772 sum -9.471 24.998 -23.885 35.848 Atomic orbital electron populations 1.22291 0.91785 1.03774 1.04105 1.21111 0.95249 0.94144 0.80820 1.21996 1.02573 0.92183 1.03869 1.22311 1.02743 1.01351 0.95773 1.50828 1.42179 1.05170 1.15545 1.23224 0.98325 0.86974 0.97867 1.21392 1.12806 0.93687 0.95573 1.16362 0.77555 0.85949 0.80056 1.90829 1.52437 1.34643 1.63885 1.48260 1.60044 1.09622 1.15597 1.22105 0.99859 0.88020 0.91265 1.22783 1.01091 0.96712 0.96242 1.22341 1.00524 0.94579 0.93959 0.89669 1.21681 0.98780 0.95360 0.99415 1.20691 0.93975 0.88531 0.94492 1.42368 1.23435 1.11351 1.60670 1.19257 1.02886 0.89117 1.25580 0.91192 1.24743 0.97056 0.98534 1.00862 1.69667 1.13523 1.35677 1.39506 0.86181 0.77461 0.84546 0.77985 1.21779 1.20767 1.21800 1.22447 1.02270 0.86337 0.89981 1.74750 1.12855 0.97954 1.22109 1.81963 1.15593 1.17182 0.89832 0.91182 0.89573 0.91310 0.91201 0.90101 0.90589 0.91062 0.89329 0.91089 0.78263 0.90985 0.90858 0.89896 0.90313 0.91270 0.91571 0.96248 0.96446 0.78331 0.93598 0.90741 0.89865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.53 8.74 37.16 0.32 -0.21 16 2 C 0.17 0.76 1.25 -131.81 -0.16 0.59 16 3 C -0.15 -0.58 8.11 37.16 0.30 -0.28 16 4 C -0.16 -0.46 8.30 37.16 0.31 -0.16 16 5 N -0.35 -2.82 3.44 -48.35 -0.17 -2.99 16 6 C 0.09 0.84 10.43 -16.83 -0.18 0.67 16 7 C -0.10 -1.15 6.85 -83.55 -0.57 -1.73 16 8 C 0.61 8.87 7.85 -12.48 -0.10 8.78 16 9 O -0.54 -9.18 17.12 5.27 0.09 -9.09 16 10 N -0.60 -8.22 3.33 -171.73 -0.57 -8.79 16 11 C 0.11 1.26 5.52 -3.03 -0.02 1.24 16 12 C -0.13 -1.40 6.42 -24.87 -0.16 -1.56 16 13 C -0.09 -1.23 3.03 -88.48 -0.27 -1.50 16 14 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 15 C -0.11 -1.81 4.84 -26.73 -0.13 -1.94 16 16 C 0.15 3.09 6.14 -4.04 -0.02 3.07 16 17 N -0.73 -19.19 5.60 -59.91 -0.34 -19.53 16 18 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 19 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 20 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 21 N -0.93 -28.89 13.06 55.49 0.72 -28.16 16 22 Si 0.91 22.98 29.55 -169.99 -5.02 17.96 16 23 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 24 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 26 C 0.11 1.58 5.71 -2.54 -0.01 1.56 16 27 N -0.20 -2.47 9.77 32.85 0.32 -2.15 16 28 N -0.07 -0.72 12.91 60.35 0.78 0.06 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 31 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 34 H 0.08 0.38 8.06 -51.93 -0.42 -0.04 16 35 H 0.07 0.18 7.43 -51.93 -0.39 -0.20 16 36 H 0.09 0.08 8.14 -51.93 -0.42 -0.34 16 37 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 38 H 0.20 1.29 7.62 -52.49 -0.40 0.89 16 39 H 0.07 0.81 7.73 -51.93 -0.40 0.41 16 40 H 0.07 0.83 7.61 -51.93 -0.40 0.43 16 41 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.08 0.83 8.04 -51.93 -0.42 0.41 16 43 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.07 1.06 8.03 -51.93 -0.42 0.65 16 45 H 0.02 0.41 7.59 -51.93 -0.39 0.01 16 46 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 47 H 0.38 10.43 7.67 -40.82 -0.31 10.12 16 48 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 49 H 0.07 1.08 7.96 -51.93 -0.41 0.67 16 50 H 0.08 1.28 8.00 -51.93 -0.42 0.87 16 LS Contribution 406.23 15.07 6.12 6.12 Total: -1.00 -35.34 406.23 -7.56 -42.91 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -8.57 Total: 2.71 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: -0.94 Total: 0.94 kcal Atomic # 7 Polarization: -62.31 SS G_CDS: 0.75 Total: -61.55 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.09 Total: -9.09 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -5.02 Total: 17.96 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -35.34 -7.56 -42.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672806408.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.967 kcal (2) G-P(sol) polarization free energy of solvation -35.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds