Wall clock time and date at job start Tue Mar 31 2020 20:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47113 * 2 1 4 4 C 1.53004 * 109.47157 * 240.00079 * 2 1 3 5 5 N 1.46504 * 109.47074 * 119.99853 * 2 1 3 6 6 C 1.34810 * 126.59305 * 75.27858 * 5 2 1 7 7 C 1.36603 * 106.83659 * 180.10458 * 6 5 2 8 8 C 1.47519 * 125.77026 * 179.89711 * 7 6 5 9 9 O 1.21605 * 120.00026 * 359.71127 * 8 7 6 10 10 N 1.34774 * 120.00257 * 179.71790 * 8 7 6 11 11 C 1.47026 * 125.64437 * 0.03737 * 10 8 7 12 12 C 1.54376 * 107.28470 * 178.87461 * 11 10 8 13 13 C 1.55154 * 102.92392 * 337.86069 * 12 11 10 14 14 H 1.08996 * 111.00484 * 277.36492 * 13 12 11 15 15 C 1.52992 * 111.00598 * 153.54525 * 13 12 11 16 16 C 1.53004 * 109.47319 * 178.17997 * 15 13 12 17 17 N 1.46499 * 109.47198 * 180.02562 * 16 15 13 18 18 C 1.36931 * 120.00122 * 180.02562 * 17 16 15 19 19 H 1.08002 * 120.00098 * 0.02562 * 18 17 16 20 20 C 1.38812 * 120.00429 * 180.02562 * 18 17 16 21 21 N 1.31624 * 119.99535 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00187 * 180.27849 * 20 18 17 23 23 H 1.48501 * 109.46922 * 269.71949 * 22 20 18 24 24 H 1.48496 * 109.47354 * 29.72145 * 22 20 18 25 25 H 1.48501 * 109.47428 * 149.72253 * 22 20 18 26 26 C 1.47421 * 125.65152 * 179.97438 * 10 8 7 27 27 N 1.34398 * 108.45898 * 359.63157 * 7 6 5 28 28 N 1.28768 * 109.52467 * 0.22694 * 27 7 6 29 29 H 1.08999 * 109.46991 * 300.00253 * 1 2 3 30 30 H 1.08998 * 109.47608 * 60.00141 * 1 2 3 31 31 H 1.08997 * 109.47125 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47011 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.46621 * 299.99879 * 3 2 1 34 34 H 1.08999 * 109.47399 * 59.99996 * 3 2 1 35 35 H 1.09006 * 109.46640 * 299.99468 * 4 2 1 36 36 H 1.08998 * 109.47041 * 59.99433 * 4 2 1 37 37 H 1.09000 * 109.47098 * 179.97438 * 4 2 1 38 38 H 1.07990 * 126.58360 * 359.96209 * 6 5 2 39 39 H 1.08998 * 109.88432 * 298.32029 * 11 10 8 40 40 H 1.08992 * 109.88400 * 59.33544 * 11 10 8 41 41 H 1.08998 * 110.75118 * 219.48640 * 12 11 10 42 42 H 1.09001 * 110.70134 * 96.20622 * 12 11 10 43 43 H 1.09000 * 109.47364 * 58.18017 * 15 13 12 44 44 H 1.08998 * 109.47610 * 298.18079 * 15 13 12 45 45 H 1.08995 * 109.46638 * 60.00097 * 16 15 13 46 46 H 1.08998 * 109.46846 * 300.00550 * 16 15 13 47 47 H 0.97001 * 119.99790 * 359.97438 * 17 16 15 48 48 H 0.97005 * 119.99717 * 180.02562 * 21 20 18 49 49 H 1.08998 * 110.36669 * 85.32391 * 26 10 8 50 50 H 1.08996 * 110.45856 * 323.04893 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0183 -0.6906 1.1962 6 6 2.0269 -2.0219 1.4084 7 6 2.5638 -2.2214 2.6485 8 6 2.7664 -3.5293 3.3002 9 8 2.4390 -4.5510 2.7278 10 7 3.3142 -3.5918 4.5300 11 6 3.7527 -2.4403 5.3322 12 6 4.2850 -2.9911 6.6725 13 6 3.5955 -4.3771 6.7765 14 1 2.5841 -4.2816 7.1716 15 6 4.4252 -5.3399 7.6280 16 6 3.6928 -6.6782 7.7448 17 7 4.4871 -7.6000 8.5607 18 6 4.0292 -8.8673 8.8041 19 1 3.0826 -9.1875 8.3943 20 6 4.7815 -9.7406 9.5777 21 7 5.9353 -9.3505 10.0767 22 14 4.1604 -11.4719 9.9032 23 1 3.3437 -11.4798 11.1434 24 1 3.3276 -11.9224 8.7592 25 1 5.3162 -12.3901 10.0659 26 6 3.5717 -4.8259 5.2942 27 7 2.8818 -1.0252 3.1721 28 7 2.5721 -0.0943 2.3380 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.6767 -1.7490 -1.2492 36 1 1.6766 -0.2075 -2.1392 37 1 3.1300 -0.7208 -1.2495 38 1 1.6745 -2.7841 0.7294 39 1 4.5456 -1.9051 4.8099 40 1 2.9108 -1.7719 5.5123 41 1 3.9858 -2.3483 7.5003 42 1 5.3690 -3.1011 6.6406 43 1 4.5675 -4.9157 8.6220 44 1 5.3959 -5.4968 7.1577 45 1 3.5506 -7.1024 6.7510 46 1 2.7221 -6.5213 8.2152 47 1 5.3377 -7.3128 8.9279 48 1 6.4612 -9.9609 10.6170 49 1 4.5340 -5.2529 5.0120 50 1 2.7734 -5.5495 5.1296 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672806408.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:15 Heat of formation + Delta-G solvation = 42.655567 kcal Electronic energy + Delta-G solvation = -28465.489504 eV Core-core repulsion = 24529.011300 eV Total energy + Delta-G solvation = -3936.478204 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -43.35221 -40.96517 -38.88779 -38.29728 -36.83247 -34.57651 -33.10584 -32.75101 -31.77483 -30.69444 -28.73992 -28.43384 -28.32988 -26.23554 -24.82273 -24.74822 -23.45899 -22.62669 -21.60049 -21.23478 -20.23257 -19.13341 -18.33775 -17.53186 -17.44028 -17.07195 -16.64010 -16.43930 -15.95654 -15.72873 -15.36154 -15.20353 -15.11682 -15.06147 -14.79753 -14.34312 -14.03100 -13.86605 -13.65153 -13.41719 -13.38368 -13.25695 -13.17976 -12.99988 -12.96484 -12.80015 -12.78826 -12.47006 -12.39799 -12.25588 -12.14227 -11.99230 -11.93602 -11.68049 -11.54981 -11.38468 -11.29293 -11.27735 -10.91346 -10.41801 -9.70114 -8.98925 -7.94881 -5.23611 0.11130 0.58433 1.00520 1.47287 1.49341 1.57991 1.87043 2.14700 2.56561 3.05131 3.21368 3.38460 3.47450 3.63552 3.64140 3.72145 3.75899 3.81334 3.89923 4.16736 4.18820 4.32105 4.33833 4.46496 4.51850 4.55896 4.58333 4.59080 4.66298 4.68786 4.74445 4.78281 4.78753 4.80344 4.89119 4.96189 5.00010 5.06437 5.13077 5.17922 5.19608 5.25903 5.31617 5.40446 5.48401 5.50794 5.52177 6.28122 6.37583 6.79031 7.02983 7.34022 8.10749 8.34306 9.28632 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.029432 B = 0.001793 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.120507 B =15611.609587 C =16247.695657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.159 3.841 3 C -0.147 4.147 4 C -0.161 4.161 5 N -0.338 5.338 6 C 0.107 3.893 7 C -0.121 4.121 8 C 0.610 3.390 9 O -0.576 6.576 10 N -0.606 5.606 11 C 0.115 3.885 12 C -0.120 4.120 13 C -0.084 4.084 14 H 0.090 0.910 15 C -0.099 4.099 16 C 0.148 3.852 17 N -0.747 5.747 18 C -0.249 4.249 19 H 0.073 0.927 20 C -0.076 4.076 21 N -0.968 5.968 22 Si 0.975 3.025 23 H -0.285 1.285 24 H -0.272 1.272 25 H -0.293 1.293 26 C 0.111 3.889 27 N -0.218 5.218 28 N -0.082 5.082 29 H 0.055 0.945 30 H 0.113 0.887 31 H 0.069 0.931 32 H 0.057 0.943 33 H 0.109 0.891 34 H 0.062 0.938 35 H 0.075 0.925 36 H 0.114 0.886 37 H 0.060 0.940 38 H 0.225 0.775 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.105 0.895 42 H 0.085 0.915 43 H 0.074 0.926 44 H 0.064 0.936 45 H 0.016 0.984 46 H 0.019 0.981 47 H 0.375 0.625 48 H 0.252 0.748 49 H 0.067 0.933 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.362 27.365 -25.445 38.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.078 3.922 3 C -0.204 4.204 4 C -0.219 4.219 5 N -0.123 5.123 6 C -0.052 4.052 7 C -0.260 4.260 8 C 0.398 3.602 9 O -0.456 6.456 10 N -0.337 5.337 11 C -0.007 4.007 12 C -0.157 4.157 13 C -0.103 4.103 14 H 0.108 0.892 15 C -0.137 4.137 16 C 0.022 3.978 17 N -0.390 5.390 18 C -0.380 4.380 19 H 0.091 0.909 20 C -0.269 4.269 21 N -0.619 5.619 22 Si 0.803 3.197 23 H -0.212 1.212 24 H -0.197 1.197 25 H -0.220 1.220 26 C -0.012 4.012 27 N -0.091 5.091 28 N -0.062 5.062 29 H 0.074 0.926 30 H 0.132 0.868 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.128 0.872 34 H 0.081 0.919 35 H 0.094 0.906 36 H 0.133 0.867 37 H 0.079 0.921 38 H 0.241 0.759 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.123 0.877 42 H 0.103 0.897 43 H 0.093 0.907 44 H 0.082 0.918 45 H 0.034 0.966 46 H 0.037 0.963 47 H 0.207 0.793 48 H 0.060 0.940 49 H 0.086 0.914 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.313 28.088 -25.220 39.132 hybrid contribution -0.034 -2.039 0.131 2.043 sum -10.347 26.049 -25.088 37.617 Atomic orbital electron populations 1.22312 0.90485 1.04064 1.04778 1.21598 0.96196 0.94374 0.80007 1.22021 1.01825 0.91957 1.04638 1.22353 1.02119 1.01826 0.95651 1.51179 1.40632 1.04911 1.15619 1.23561 0.96728 0.87791 0.97082 1.21243 1.15055 0.92830 0.96877 1.16703 0.76946 0.86481 0.80047 1.90793 1.54043 1.35958 1.64762 1.48357 1.59736 1.09969 1.15642 1.22163 1.00056 0.87318 0.91173 1.22777 1.01221 0.95182 0.96558 1.22195 1.00554 0.95205 0.92395 0.89213 1.21510 0.98469 0.93417 1.00295 1.20866 0.93940 0.89870 0.93148 1.42591 1.23635 1.11510 1.61284 1.19651 1.02908 0.90417 1.25064 0.90924 1.25587 0.97465 1.02580 1.01222 1.69819 1.14743 1.36908 1.40445 0.85124 0.76853 0.79628 0.78066 1.21194 1.19661 1.21961 1.22358 1.01217 0.86567 0.91008 1.74709 1.13476 0.98005 1.22900 1.81884 1.16234 1.17286 0.90751 0.92576 0.86828 0.91222 0.92364 0.87217 0.91934 0.90564 0.86698 0.92107 0.75853 0.90677 0.90497 0.87683 0.89673 0.90738 0.91758 0.96621 0.96327 0.79329 0.93954 0.91444 0.91626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.67 8.74 71.98 0.63 -0.04 16 2 C 0.16 1.10 1.25 3.60 0.00 1.11 16 3 C -0.15 -0.90 8.11 71.98 0.58 -0.32 16 4 C -0.16 -0.50 8.30 71.98 0.60 0.10 16 5 N -0.34 -5.06 3.44 -306.89 -1.06 -6.12 16 6 C 0.11 1.84 10.43 83.85 0.87 2.71 16 7 C -0.12 -2.90 6.85 40.82 0.28 -2.62 16 8 C 0.61 17.88 7.85 86.69 0.68 18.56 16 9 O -0.58 -20.01 17.12 -4.05 -0.07 -20.08 16 10 N -0.61 -16.53 3.33 -815.50 -2.71 -19.24 16 11 C 0.11 2.51 5.52 86.75 0.48 2.99 16 12 C -0.12 -2.36 6.42 31.80 0.20 -2.15 16 13 C -0.08 -2.11 3.03 -9.41 -0.03 -2.14 16 14 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 15 C -0.10 -3.07 4.84 30.59 0.15 -2.92 16 16 C 0.15 6.09 6.14 86.38 0.53 6.62 16 17 N -0.75 -39.46 5.60 -343.46 -1.92 -41.39 16 18 C -0.25 -14.46 9.99 84.03 0.84 -13.62 16 19 H 0.07 4.09 7.83 -2.91 -0.02 4.07 16 20 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 21 N -0.97 -60.48 13.06 21.65 0.28 -60.20 16 22 Si 0.97 47.40 29.55 68.60 2.03 49.42 16 23 H -0.28 -13.52 7.11 99.48 0.71 -12.82 16 24 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 25 H -0.29 -14.22 7.11 99.48 0.71 -13.52 16 26 C 0.11 3.17 5.71 86.85 0.50 3.66 16 27 N -0.22 -5.24 9.77 -50.00 -0.49 -5.73 16 28 N -0.08 -1.74 12.91 37.02 0.48 -1.26 16 29 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.11 -0.12 8.14 -2.39 -0.02 -0.14 16 31 H 0.07 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 33 H 0.11 0.03 8.14 -2.39 -0.02 0.01 16 34 H 0.06 0.57 8.06 -2.39 -0.02 0.55 16 35 H 0.08 0.19 7.43 -2.38 -0.02 0.17 16 36 H 0.11 -0.22 8.14 -2.39 -0.02 -0.24 16 37 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 38 H 0.23 2.56 7.62 -2.92 -0.02 2.54 16 39 H 0.07 1.63 7.73 -2.39 -0.02 1.61 16 40 H 0.08 1.65 7.61 -2.39 -0.02 1.64 16 41 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.08 1.61 8.04 -2.39 -0.02 1.59 16 43 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 44 H 0.06 2.04 8.03 -2.39 -0.02 2.02 16 45 H 0.02 0.67 7.59 -2.39 -0.02 0.65 16 46 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 47 H 0.37 20.72 7.67 -92.71 -0.71 20.01 16 48 H 0.25 15.17 8.31 -92.70 -0.77 14.40 16 49 H 0.07 2.01 7.96 -2.39 -0.02 1.99 16 50 H 0.07 2.09 8.00 -2.39 -0.02 2.07 16 Total: -1.00 -77.18 406.23 3.53 -73.65 By element: Atomic # 1 Polarization: 22.83 SS G_CDS: 0.21 Total: 23.04 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: 6.78 Total: 7.90 kcal Atomic # 7 Polarization: -128.52 SS G_CDS: -5.42 Total: -133.94 kcal Atomic # 8 Polarization: -20.01 SS G_CDS: -0.07 Total: -20.08 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 2.03 Total: 49.42 kcal Total: -77.18 3.53 -73.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672806408.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.307 kcal (2) G-P(sol) polarization free energy of solvation -77.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds