Wall clock time and date at job start Tue Mar 31 2020 18:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36594 * 126.57829 * 2 1 4 4 C 1.47526 * 125.76994 * 0.04332 * 3 2 1 5 5 O 1.21597 * 120.00136 * 359.71225 * 4 3 2 6 6 N 1.34774 * 120.00180 * 179.71858 * 4 3 2 7 7 C 1.47026 * 125.64635 * 0.02845 * 6 4 3 8 8 C 1.54323 * 107.27009 * 178.91089 * 7 6 4 9 9 C 1.55164 * 102.94468 * 337.81105 * 8 7 6 10 10 H 1.08992 * 111.03927 * 277.41471 * 9 8 7 11 11 C 1.52996 * 111.00335 * 153.57522 * 9 8 7 12 12 C 1.52998 * 109.46929 * 181.35324 * 11 9 8 13 13 N 1.46506 * 109.47237 * 179.97438 * 12 11 9 14 14 C 1.36939 * 120.00073 * 179.72302 * 13 12 11 15 15 H 1.08004 * 119.99859 * 0.02562 * 14 13 12 16 16 C 1.38805 * 119.99849 * 180.02562 * 14 13 12 17 17 N 1.31625 * 120.00056 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 120.00155 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.46896 * 90.00225 * 18 16 14 20 20 H 1.48501 * 109.47275 * 210.00265 * 18 16 14 21 21 H 1.48499 * 109.47039 * 330.00065 * 18 16 14 22 22 C 1.47424 * 125.65178 * 180.02562 * 6 4 3 23 23 N 1.34400 * 108.46195 * 179.77488 * 3 2 1 24 24 N 1.28759 * 109.51927 * 0.22720 * 23 3 2 25 25 N 1.34813 * 126.58382 * 180.17268 * 2 1 3 26 26 C 1.46496 * 126.59483 * 0.02562 * 25 2 1 27 27 C 1.52993 * 109.47340 * 120.27576 * 26 25 2 28 28 C 1.53000 * 109.47375 * 240.27749 * 26 25 2 29 29 H 1.09002 * 109.47245 * 90.02124 * 1 2 3 30 30 H 1.09001 * 109.46534 * 210.01819 * 1 2 3 31 31 H 1.08996 * 109.47204 * 330.01638 * 1 2 3 32 32 H 1.08994 * 109.88964 * 298.33369 * 7 6 4 33 33 H 1.08998 * 109.87652 * 59.34744 * 7 6 4 34 34 H 1.09005 * 110.72068 * 219.45151 * 8 7 6 35 35 H 1.09002 * 110.72117 * 96.17178 * 8 7 6 36 36 H 1.09000 * 109.47441 * 61.35413 * 11 9 8 37 37 H 1.09002 * 109.47087 * 301.34859 * 11 9 8 38 38 H 1.09001 * 109.47671 * 60.00109 * 12 11 9 39 39 H 1.08998 * 109.47454 * 300.00107 * 12 11 9 40 40 H 0.97005 * 119.99811 * 0.02562 * 13 12 11 41 41 H 0.97000 * 119.99835 * 179.97438 * 17 16 14 42 42 H 1.09000 * 110.36753 * 85.31468 * 22 6 4 43 43 H 1.08997 * 110.36262 * 322.99747 * 22 6 4 44 44 H 1.09000 * 109.47115 * 0.27349 * 26 25 2 45 45 H 1.09000 * 109.47202 * 59.99827 * 27 26 25 46 46 H 1.09007 * 109.47416 * 180.02562 * 27 26 25 47 47 H 1.09009 * 109.47346 * 299.99788 * 27 26 25 48 48 H 1.09002 * 109.47202 * 59.99478 * 28 26 25 49 49 H 1.08998 * 109.47687 * 180.02562 * 28 26 25 50 50 H 1.09000 * 109.46672 * 299.99871 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8737 2.5027 0.0009 5 8 0.6859 2.7628 -0.0035 6 7 2.7815 3.4988 0.0065 7 6 4.2417 3.3273 0.0116 8 6 4.8687 4.7372 -0.0109 9 6 3.7314 5.6141 -0.5984 10 1 3.7172 5.5589 -1.6868 11 6 3.8579 7.0642 -0.1273 12 6 2.7026 7.8886 -0.6985 13 7 2.8234 9.2771 -0.2469 14 6 1.8986 10.2077 -0.6393 15 1 1.0799 9.9179 -1.2814 16 6 2.0134 11.5233 -0.2119 17 7 1.1247 12.4179 -0.5895 18 14 3.4289 12.0242 0.8992 19 1 4.5819 12.4548 0.0683 20 1 3.0004 13.1473 1.7711 21 1 3.8298 10.8688 1.7416 22 6 2.4750 4.9408 0.0086 23 7 3.5984 0.6790 0.0050 24 7 3.6299 -0.6082 0.0033 25 7 2.3105 -1.0825 -0.0033 26 6 1.8866 -2.4848 -0.0080 27 6 2.4355 -3.1794 -1.2558 28 6 2.4231 -3.1841 1.2426 29 1 -0.3634 -0.0004 -1.0277 30 1 -0.3632 -0.8899 0.5141 31 1 -0.3633 0.8901 0.5136 32 1 4.5499 2.7988 0.9136 33 1 4.5521 2.7670 -0.8704 34 1 5.7458 4.7590 -0.6579 35 1 5.1241 5.0619 0.9978 36 1 4.8052 7.4774 -0.4736 37 1 3.8238 7.0967 0.9617 38 1 1.7553 7.4755 -0.3521 39 1 2.7366 7.8561 -1.7874 40 1 3.5610 9.5382 0.3265 41 1 1.2048 13.3371 -0.2905 42 1 2.3106 5.2923 1.0272 43 1 1.6002 5.1435 -0.6092 44 1 0.7977 -2.5352 -0.0135 45 1 3.5243 -3.1290 -1.2503 46 1 2.1197 -4.2227 -1.2596 47 1 2.0532 -2.6812 -2.1468 48 1 2.0320 -2.6893 2.1316 49 1 2.1081 -4.2276 1.2389 50 1 3.5119 -3.1337 1.2481 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672885662.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:53 Heat of formation + Delta-G solvation = 65.810183 kcal Electronic energy + Delta-G solvation = -28718.385286 eV Core-core repulsion = 24782.911142 eV Total energy + Delta-G solvation = -3935.474145 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.60626 -39.91606 -37.79310 -36.87980 -35.27116 -33.43524 -32.95809 -31.47429 -30.98378 -29.65699 -28.44385 -28.01788 -27.11720 -24.74609 -24.33082 -22.96540 -22.33223 -21.15856 -20.65358 -20.16580 -19.47744 -17.73672 -17.50523 -16.78691 -16.54375 -16.14590 -15.62647 -15.05738 -14.78198 -14.57717 -14.45520 -14.04193 -13.89413 -13.71481 -13.60075 -13.44932 -13.29104 -12.99101 -12.94391 -12.91531 -12.72665 -12.59560 -12.37263 -12.20023 -12.10764 -11.89778 -11.73784 -11.60116 -11.27259 -11.16008 -10.85521 -10.62913 -10.52618 -10.46029 -10.29320 -10.10927 -10.02587 -9.53383 -9.42550 -8.83508 -8.63907 -7.16949 -5.71306 -3.06488 0.81912 1.50650 1.61482 2.86753 3.14459 3.41549 3.44155 3.49027 3.72430 3.84709 4.10983 4.14490 4.22374 4.35305 4.58439 4.63036 4.64211 4.68287 4.83883 4.84307 4.89093 5.00838 5.02114 5.09937 5.23184 5.26324 5.30383 5.41192 5.43977 5.44029 5.55257 5.56794 5.63195 5.69396 5.74384 5.84618 5.89965 5.93876 6.03297 6.10128 6.11088 6.20972 6.26542 6.39329 6.80575 6.84022 7.40525 7.66220 8.05208 8.06164 8.47899 9.27435 9.99791 10.19814 11.47246 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.029503 B = 0.001935 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.838406 B =14466.045512 C =15033.253092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.124 3.876 3 C -0.102 4.102 4 C 0.616 3.384 5 O -0.537 6.537 6 N -0.604 5.604 7 C 0.111 3.889 8 C -0.130 4.130 9 C -0.094 4.094 10 H 0.087 0.913 11 C -0.118 4.118 12 C 0.154 3.846 13 N -0.758 5.758 14 C -0.242 4.242 15 H 0.090 0.910 16 C 0.002 3.998 17 N -0.935 5.935 18 Si 0.886 3.114 19 H -0.285 1.285 20 H -0.291 1.291 21 H -0.277 1.277 22 C 0.111 3.889 23 N -0.201 5.201 24 N -0.068 5.068 25 N -0.357 5.357 26 C 0.143 3.857 27 C -0.162 4.162 28 C -0.163 4.163 29 H 0.092 0.908 30 H 0.074 0.926 31 H 0.113 0.887 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.028 0.972 39 H 0.027 0.973 40 H 0.360 0.640 41 H 0.259 0.741 42 H 0.074 0.926 43 H 0.085 0.915 44 H 0.110 0.890 45 H 0.074 0.926 46 H 0.083 0.917 47 H 0.064 0.936 48 H 0.064 0.936 49 H 0.083 0.917 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.140 -36.999 1.895 37.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.014 4.014 3 C -0.241 4.241 4 C 0.403 3.597 5 O -0.414 6.414 6 N -0.336 5.336 7 C -0.012 4.012 8 C -0.168 4.168 9 C -0.114 4.114 10 H 0.105 0.895 11 C -0.157 4.157 12 C 0.027 3.973 13 N -0.403 5.403 14 C -0.372 4.372 15 H 0.108 0.892 16 C -0.194 4.194 17 N -0.584 5.584 18 Si 0.716 3.284 19 H -0.211 1.211 20 H -0.218 1.218 21 H -0.203 1.203 22 C -0.010 4.010 23 N -0.074 5.074 24 N -0.047 5.047 25 N -0.144 5.144 26 C 0.042 3.958 27 C -0.220 4.220 28 C -0.221 4.221 29 H 0.110 0.890 30 H 0.092 0.908 31 H 0.132 0.868 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.046 0.954 39 H 0.045 0.955 40 H 0.193 0.807 41 H 0.069 0.931 42 H 0.092 0.908 43 H 0.103 0.897 44 H 0.128 0.872 45 H 0.093 0.907 46 H 0.102 0.898 47 H 0.083 0.917 48 H 0.083 0.917 49 H 0.101 0.899 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.733 -37.262 1.792 37.604 hybrid contribution 0.069 0.554 0.785 0.963 sum 4.802 -36.708 2.576 37.110 Atomic orbital electron populations 1.20741 0.84723 1.05388 1.04739 1.21918 0.96250 0.86337 0.96923 1.21118 0.89090 0.95130 1.18734 1.16312 0.84682 0.81924 0.76795 1.90787 1.15423 1.83317 1.51916 1.48238 1.07122 1.06502 1.71764 1.22083 0.79031 0.97453 1.02660 1.22777 0.98254 0.93516 1.02289 1.22334 0.93606 0.94722 1.00747 0.89477 1.21732 1.00292 0.92614 1.01020 1.20677 0.95224 0.84588 0.96788 1.42725 1.31662 1.05355 1.60572 1.19089 1.04527 0.88546 1.25068 0.89222 1.24687 0.98327 0.95906 1.00459 1.69712 1.36553 1.02622 1.49483 0.86520 0.82942 0.77863 0.81054 1.21132 1.21781 1.20321 1.22447 0.98894 0.77857 1.01832 1.74709 1.18953 1.03938 1.09805 1.81918 0.96373 1.03407 1.23044 1.50631 1.06313 1.07219 1.50260 1.21656 1.00526 0.75246 0.98365 1.22156 1.03197 1.00920 0.95756 1.22165 1.03280 1.00903 0.95752 0.88959 0.90768 0.86819 0.91023 0.90844 0.89903 0.90398 0.91322 0.91633 0.95395 0.95543 0.80735 0.93131 0.90766 0.89697 0.87248 0.90663 0.89850 0.91680 0.91702 0.89852 0.90666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.67 9.40 36.01 0.34 -0.33 16 2 C 0.12 1.20 7.02 -81.88 -0.57 0.62 16 3 C -0.10 -1.26 6.85 -83.55 -0.57 -1.83 16 4 C 0.62 8.72 7.85 -12.48 -0.10 8.63 16 5 O -0.54 -8.63 14.97 5.28 0.08 -8.55 16 6 N -0.60 -8.00 3.33 -171.74 -0.57 -8.57 16 7 C 0.11 1.22 5.52 -3.06 -0.02 1.21 16 8 C -0.13 -1.32 6.42 -24.89 -0.16 -1.48 16 9 C -0.09 -1.16 3.07 -88.46 -0.27 -1.43 16 10 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 11 C -0.12 -1.73 4.84 -26.73 -0.13 -1.86 16 12 C 0.15 3.00 6.11 -4.04 -0.02 2.98 16 13 N -0.76 -18.47 5.41 -59.91 -0.32 -18.79 16 14 C -0.24 -7.07 10.47 -15.06 -0.16 -7.23 16 15 H 0.09 2.80 8.06 -52.48 -0.42 2.37 16 16 C 0.00 0.05 5.50 -17.43 -0.10 -0.05 16 17 N -0.94 -30.00 13.97 55.49 0.78 -29.23 16 18 Si 0.89 22.51 27.73 -169.99 -4.71 17.80 16 19 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 20 H -0.29 -7.49 7.11 56.52 0.40 -7.08 16 21 H -0.28 -6.61 6.52 56.52 0.37 -6.24 16 22 C 0.11 1.51 5.57 -2.52 -0.01 1.49 16 23 N -0.20 -2.49 9.77 32.85 0.32 -2.17 16 24 N -0.07 -0.76 13.67 60.35 0.82 0.06 16 25 N -0.36 -3.02 3.28 -50.41 -0.17 -3.18 16 26 C 0.14 0.63 3.68 -67.94 -0.25 0.38 16 27 C -0.16 -0.59 9.47 37.15 0.35 -0.24 16 28 C -0.16 -0.59 9.47 37.16 0.35 -0.24 16 29 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.29 7.20 -51.93 -0.37 -0.09 16 31 H 0.11 1.01 6.43 -51.93 -0.33 0.68 16 32 H 0.07 0.79 7.73 -51.93 -0.40 0.39 16 33 H 0.07 0.81 7.61 -51.93 -0.40 0.42 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.08 0.76 8.04 -51.93 -0.42 0.34 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.06 0.95 8.10 -51.93 -0.42 0.53 16 38 H 0.03 0.56 7.46 -51.93 -0.39 0.17 16 39 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.36 8.49 5.53 -40.82 -0.23 8.26 16 41 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 42 H 0.07 1.03 8.00 -51.93 -0.42 0.61 16 43 H 0.08 1.26 7.96 -51.93 -0.41 0.84 16 44 H 0.11 0.24 6.79 -51.93 -0.35 -0.11 16 45 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.08 0.12 8.14 -51.92 -0.42 -0.30 16 47 H 0.06 0.28 8.14 -51.92 -0.42 -0.14 16 48 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 49 H 0.08 0.12 8.14 -51.93 -0.42 -0.31 16 50 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 400.90 15.07 6.04 6.04 Total: -1.00 -35.90 400.90 -7.43 -43.33 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -8.38 Total: 2.64 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: -1.32 Total: 0.62 kcal Atomic # 7 Polarization: -62.73 SS G_CDS: 0.86 Total: -61.87 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: 0.08 Total: -8.55 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -4.71 Total: 17.80 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.90 -7.43 -43.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672885662.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.145 kcal (2) G-P(sol) polarization free energy of solvation -35.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds