Wall clock time and date at job start Tue Mar 31 2020 18:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36594 * 126.57829 * 2 1 4 4 C 1.47526 * 125.76994 * 0.04332 * 3 2 1 5 5 O 1.21597 * 120.00136 * 359.71225 * 4 3 2 6 6 N 1.34774 * 120.00180 * 179.71858 * 4 3 2 7 7 C 1.47026 * 125.64635 * 0.02845 * 6 4 3 8 8 C 1.54323 * 107.27009 * 178.91089 * 7 6 4 9 9 C 1.55164 * 102.94468 * 337.81105 * 8 7 6 10 10 H 1.08992 * 111.03927 * 277.41471 * 9 8 7 11 11 C 1.52996 * 111.00335 * 153.57522 * 9 8 7 12 12 C 1.52998 * 109.46929 * 181.35324 * 11 9 8 13 13 N 1.46506 * 109.47237 * 179.97438 * 12 11 9 14 14 C 1.36939 * 120.00073 * 179.72302 * 13 12 11 15 15 H 1.08004 * 119.99859 * 0.02562 * 14 13 12 16 16 C 1.38805 * 119.99849 * 180.02562 * 14 13 12 17 17 N 1.31625 * 120.00056 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 120.00155 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.46896 * 90.00225 * 18 16 14 20 20 H 1.48501 * 109.47275 * 210.00265 * 18 16 14 21 21 H 1.48499 * 109.47039 * 330.00065 * 18 16 14 22 22 C 1.47424 * 125.65178 * 180.02562 * 6 4 3 23 23 N 1.34400 * 108.46195 * 179.77488 * 3 2 1 24 24 N 1.28759 * 109.51927 * 0.22720 * 23 3 2 25 25 N 1.34813 * 126.58382 * 180.17268 * 2 1 3 26 26 C 1.46496 * 126.59483 * 0.02562 * 25 2 1 27 27 C 1.52993 * 109.47340 * 120.27576 * 26 25 2 28 28 C 1.53000 * 109.47375 * 240.27749 * 26 25 2 29 29 H 1.09002 * 109.47245 * 90.02124 * 1 2 3 30 30 H 1.09001 * 109.46534 * 210.01819 * 1 2 3 31 31 H 1.08996 * 109.47204 * 330.01638 * 1 2 3 32 32 H 1.08994 * 109.88964 * 298.33369 * 7 6 4 33 33 H 1.08998 * 109.87652 * 59.34744 * 7 6 4 34 34 H 1.09005 * 110.72068 * 219.45151 * 8 7 6 35 35 H 1.09002 * 110.72117 * 96.17178 * 8 7 6 36 36 H 1.09000 * 109.47441 * 61.35413 * 11 9 8 37 37 H 1.09002 * 109.47087 * 301.34859 * 11 9 8 38 38 H 1.09001 * 109.47671 * 60.00109 * 12 11 9 39 39 H 1.08998 * 109.47454 * 300.00107 * 12 11 9 40 40 H 0.97005 * 119.99811 * 0.02562 * 13 12 11 41 41 H 0.97000 * 119.99835 * 179.97438 * 17 16 14 42 42 H 1.09000 * 110.36753 * 85.31468 * 22 6 4 43 43 H 1.08997 * 110.36262 * 322.99747 * 22 6 4 44 44 H 1.09000 * 109.47115 * 0.27349 * 26 25 2 45 45 H 1.09000 * 109.47202 * 59.99827 * 27 26 25 46 46 H 1.09007 * 109.47416 * 180.02562 * 27 26 25 47 47 H 1.09009 * 109.47346 * 299.99788 * 27 26 25 48 48 H 1.09002 * 109.47202 * 59.99478 * 28 26 25 49 49 H 1.08998 * 109.47687 * 180.02562 * 28 26 25 50 50 H 1.09000 * 109.46672 * 299.99871 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8737 2.5027 0.0009 5 8 0.6859 2.7628 -0.0035 6 7 2.7815 3.4988 0.0065 7 6 4.2417 3.3273 0.0116 8 6 4.8687 4.7372 -0.0109 9 6 3.7314 5.6141 -0.5984 10 1 3.7172 5.5589 -1.6868 11 6 3.8579 7.0642 -0.1273 12 6 2.7026 7.8886 -0.6985 13 7 2.8234 9.2771 -0.2469 14 6 1.8986 10.2077 -0.6393 15 1 1.0799 9.9179 -1.2814 16 6 2.0134 11.5233 -0.2119 17 7 1.1247 12.4179 -0.5895 18 14 3.4289 12.0242 0.8992 19 1 4.5819 12.4548 0.0683 20 1 3.0004 13.1473 1.7711 21 1 3.8298 10.8688 1.7416 22 6 2.4750 4.9408 0.0086 23 7 3.5984 0.6790 0.0050 24 7 3.6299 -0.6082 0.0033 25 7 2.3105 -1.0825 -0.0033 26 6 1.8866 -2.4848 -0.0080 27 6 2.4355 -3.1794 -1.2558 28 6 2.4231 -3.1841 1.2426 29 1 -0.3634 -0.0004 -1.0277 30 1 -0.3632 -0.8899 0.5141 31 1 -0.3633 0.8901 0.5136 32 1 4.5499 2.7988 0.9136 33 1 4.5521 2.7670 -0.8704 34 1 5.7458 4.7590 -0.6579 35 1 5.1241 5.0619 0.9978 36 1 4.8052 7.4774 -0.4736 37 1 3.8238 7.0967 0.9617 38 1 1.7553 7.4755 -0.3521 39 1 2.7366 7.8561 -1.7874 40 1 3.5610 9.5382 0.3265 41 1 1.2048 13.3371 -0.2905 42 1 2.3106 5.2923 1.0272 43 1 1.6002 5.1435 -0.6092 44 1 0.7977 -2.5352 -0.0135 45 1 3.5243 -3.1290 -1.2503 46 1 2.1197 -4.2227 -1.2596 47 1 2.0532 -2.6812 -2.1468 48 1 2.0320 -2.6893 2.1316 49 1 2.1081 -4.2276 1.2389 50 1 3.5119 -3.1337 1.2481 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672885662.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:52 Heat of formation + Delta-G solvation = 41.226738 kcal Electronic energy + Delta-G solvation = -28719.451305 eV Core-core repulsion = 24782.911142 eV Total energy + Delta-G solvation = -3936.540163 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -43.38125 -40.94193 -38.89109 -37.40018 -36.97554 -34.58801 -34.02860 -33.09704 -31.92292 -30.87394 -29.30685 -28.31634 -28.28961 -26.06531 -25.05587 -24.39498 -23.33352 -22.65341 -21.33851 -21.23189 -20.37694 -19.60721 -18.49009 -17.61063 -17.31727 -17.15843 -16.61665 -16.46262 -15.98993 -15.73652 -15.36614 -15.25731 -15.05651 -14.79086 -14.39381 -14.28465 -14.21278 -14.02079 -13.96552 -13.83822 -13.60553 -13.26470 -13.22491 -13.20442 -13.05722 -12.88233 -12.83788 -12.54798 -12.43084 -12.29738 -12.09832 -11.96213 -11.84640 -11.74633 -11.54784 -11.42053 -11.20379 -11.13262 -10.94877 -10.27715 -9.66816 -9.28778 -8.02072 -5.36172 0.07594 0.58143 1.01222 1.39108 1.43840 1.51299 1.89047 2.14076 2.50029 3.06545 3.23400 3.29015 3.42461 3.53172 3.58865 3.70553 3.75567 3.79538 3.96162 4.02460 4.08160 4.31030 4.32977 4.45704 4.50347 4.55504 4.56060 4.60604 4.62310 4.66843 4.68178 4.73965 4.76140 4.83944 4.87737 4.95711 4.99134 5.09209 5.12257 5.16850 5.19537 5.21441 5.30579 5.37966 5.47625 5.53978 5.76205 6.21998 6.38585 6.79888 7.04376 7.09028 7.84886 8.05562 9.19596 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.029503 B = 0.001935 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.838406 B =14466.045512 C =15033.253092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.131 3.869 3 C -0.130 4.130 4 C 0.609 3.391 5 O -0.567 6.567 6 N -0.607 5.607 7 C 0.114 3.886 8 C -0.118 4.118 9 C -0.085 4.085 10 H 0.089 0.911 11 C -0.103 4.103 12 C 0.149 3.851 13 N -0.759 5.759 14 C -0.240 4.240 15 H 0.051 0.949 16 C -0.068 4.068 17 N -0.986 5.986 18 Si 0.962 3.038 19 H -0.275 1.275 20 H -0.296 1.296 21 H -0.248 1.248 22 C 0.110 3.890 23 N -0.215 5.215 24 N -0.084 5.084 25 N -0.345 5.345 26 C 0.131 3.869 27 C -0.159 4.159 28 C -0.159 4.159 29 H 0.103 0.897 30 H 0.111 0.889 31 H 0.092 0.908 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.105 0.895 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.019 0.981 39 H 0.022 0.978 40 H 0.368 0.632 41 H 0.258 0.742 42 H 0.069 0.931 43 H 0.063 0.937 44 H 0.140 0.860 45 H 0.058 0.942 46 H 0.112 0.888 47 H 0.057 0.943 48 H 0.057 0.943 49 H 0.112 0.888 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.940 -39.656 2.913 40.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.009 4.009 3 C -0.269 4.269 4 C 0.397 3.603 5 O -0.447 6.447 6 N -0.339 5.339 7 C -0.008 4.008 8 C -0.156 4.156 9 C -0.105 4.105 10 H 0.107 0.893 11 C -0.141 4.141 12 C 0.023 3.977 13 N -0.405 5.405 14 C -0.371 4.371 15 H 0.069 0.931 16 C -0.259 4.259 17 N -0.636 5.636 18 Si 0.788 3.212 19 H -0.201 1.201 20 H -0.223 1.223 21 H -0.172 1.172 22 C -0.012 4.012 23 N -0.088 5.088 24 N -0.064 5.064 25 N -0.132 5.132 26 C 0.032 3.968 27 C -0.217 4.217 28 C -0.217 4.217 29 H 0.122 0.878 30 H 0.129 0.871 31 H 0.110 0.890 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.124 0.876 35 H 0.106 0.894 36 H 0.102 0.898 37 H 0.090 0.910 38 H 0.037 0.963 39 H 0.040 0.960 40 H 0.201 0.799 41 H 0.067 0.933 42 H 0.088 0.912 43 H 0.082 0.918 44 H 0.158 0.842 45 H 0.077 0.923 46 H 0.131 0.869 47 H 0.076 0.924 48 H 0.076 0.924 49 H 0.131 0.869 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.581 -39.998 2.807 40.633 hybrid contribution -0.622 1.228 0.393 1.432 sum 5.959 -38.770 3.200 39.356 Atomic orbital electron populations 1.20821 0.82736 1.06108 1.05627 1.22286 0.97345 0.85934 0.95289 1.21067 0.89902 0.94860 1.21088 1.16648 0.84469 0.82856 0.76291 1.90757 1.16551 1.83964 1.53396 1.48348 1.08088 1.06128 1.71325 1.22151 0.77676 0.98245 1.02758 1.22769 0.97830 0.91740 1.03221 1.22212 0.93931 0.93504 1.00837 0.89280 1.21588 0.98502 0.92902 1.01134 1.20862 0.97197 0.82925 0.96690 1.42720 1.30796 1.06376 1.60632 1.19062 1.04282 0.89779 1.23946 0.93056 1.25614 1.01763 0.95818 1.02751 1.69910 1.39187 1.03032 1.51470 0.85309 0.78967 0.77995 0.78914 1.20106 1.22257 1.17241 1.22387 0.98979 0.78637 1.01238 1.74664 1.19189 1.04560 1.10414 1.81823 0.98044 1.03014 1.23494 1.50952 1.05179 1.08431 1.48595 1.22199 1.02388 0.73090 0.99108 1.22158 1.02066 1.02481 0.94947 1.22168 1.02148 1.02461 0.94935 0.87830 0.87086 0.88984 0.90871 0.90814 0.87617 0.89354 0.89841 0.90965 0.96311 0.96008 0.79871 0.93316 0.91240 0.91826 0.84215 0.92323 0.86931 0.92400 0.92353 0.86935 0.92334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.17 9.40 71.24 0.67 -0.50 16 2 C 0.13 2.42 7.02 41.72 0.29 2.71 16 3 C -0.13 -3.23 6.85 40.82 0.28 -2.95 16 4 C 0.61 17.74 7.85 86.69 0.68 18.42 16 5 O -0.57 -19.01 14.97 -4.02 -0.06 -19.07 16 6 N -0.61 -16.18 3.33 -815.51 -2.71 -18.90 16 7 C 0.11 2.40 5.52 86.73 0.48 2.88 16 8 C -0.12 -2.08 6.42 31.79 0.20 -1.87 16 9 C -0.09 -1.96 3.07 -9.39 -0.03 -1.99 16 10 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 11 C -0.10 -2.80 4.84 30.59 0.15 -2.66 16 12 C 0.15 5.76 6.11 86.38 0.53 6.29 16 13 N -0.76 -36.48 5.41 -343.44 -1.86 -38.33 16 14 C -0.24 -14.25 10.47 84.03 0.88 -13.37 16 15 H 0.05 3.36 8.06 -2.91 -0.02 3.34 16 16 C -0.07 -4.14 5.50 84.86 0.47 -3.68 16 17 N -0.99 -64.84 13.97 21.65 0.30 -64.54 16 18 Si 0.96 46.10 27.73 68.60 1.90 48.00 16 19 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 20 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 21 H -0.25 -10.60 6.52 99.48 0.65 -9.95 16 22 C 0.11 3.00 5.57 86.86 0.48 3.48 16 23 N -0.22 -5.32 9.77 -49.99 -0.49 -5.81 16 24 N -0.08 -1.85 13.67 37.02 0.51 -1.34 16 25 N -0.34 -5.37 3.28 -313.41 -1.03 -6.40 16 26 C 0.13 0.83 3.68 44.99 0.17 0.99 16 27 C -0.16 -0.81 9.47 71.98 0.68 -0.13 16 28 C -0.16 -0.79 9.47 71.98 0.68 -0.11 16 29 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.11 0.50 7.20 -2.39 -0.02 0.49 16 31 H 0.09 1.64 6.43 -2.39 -0.02 1.62 16 32 H 0.07 1.54 7.73 -2.39 -0.02 1.52 16 33 H 0.07 1.57 7.61 -2.39 -0.02 1.55 16 34 H 0.11 1.45 8.14 -2.38 -0.02 1.43 16 35 H 0.09 1.43 8.04 -2.39 -0.02 1.41 16 36 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.07 1.91 8.10 -2.39 -0.02 1.89 16 38 H 0.02 0.76 7.46 -2.39 -0.02 0.75 16 39 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.37 16.45 5.53 -92.70 -0.51 15.94 16 41 H 0.26 16.09 8.31 -92.71 -0.77 15.32 16 42 H 0.07 1.94 8.00 -2.39 -0.02 1.92 16 43 H 0.06 1.99 7.96 -2.39 -0.02 1.97 16 44 H 0.14 0.07 6.79 -2.39 -0.02 0.05 16 45 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 46 H 0.11 -0.07 8.14 -2.38 -0.02 -0.09 16 47 H 0.06 0.40 8.14 -2.38 -0.02 0.38 16 48 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 49 H 0.11 -0.08 8.14 -2.39 -0.02 -0.10 16 50 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 Total: -1.00 -81.29 400.90 3.54 -77.75 By element: Atomic # 1 Polarization: 20.76 SS G_CDS: 0.36 Total: 21.12 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: 6.61 Total: 7.52 kcal Atomic # 7 Polarization: -130.04 SS G_CDS: -5.28 Total: -135.32 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: -0.06 Total: -19.07 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 1.90 Total: 48.00 kcal Total: -81.29 3.54 -77.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672885662.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.975 kcal (2) G-P(sol) polarization free energy of solvation -81.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds