Wall clock time and date at job start Tue Mar 31 2020 20:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46973 * 2 1 4 4 C 1.53003 * 109.46949 * 240.00013 * 2 1 3 5 5 N 1.46498 * 109.46994 * 120.00099 * 2 1 3 6 6 C 1.34816 * 126.59611 * 74.99577 * 5 2 1 7 7 C 1.36591 * 106.83964 * 179.97438 * 6 5 2 8 8 C 1.47521 * 125.77082 * 179.73525 * 7 6 5 9 9 O 1.21594 * 119.99832 * 353.46088 * 8 7 6 10 10 N 1.34772 * 120.00194 * 173.45496 * 8 7 6 11 11 C 1.46932 * 120.63009 * 3.56158 * 10 8 7 12 12 C 1.53193 * 108.77522 * 233.58156 * 11 10 8 13 13 C 1.53037 * 109.31531 * 305.36453 * 12 11 10 14 14 C 1.53051 * 109.53591 * 61.36561 * 13 12 11 15 15 C 1.46924 * 120.63260 * 183.28270 * 10 8 7 16 16 H 1.09008 * 109.58731 * 246.20598 * 15 10 8 17 17 C 1.53005 * 109.58706 * 6.62670 * 15 10 8 18 18 N 1.46499 * 109.47011 * 287.75199 * 17 15 10 19 19 C 1.36935 * 120.00112 * 175.42492 * 18 17 15 20 20 H 1.08001 * 119.99463 * 0.02562 * 19 18 17 21 21 C 1.38812 * 120.00266 * 180.02562 * 19 18 17 22 22 N 1.31614 * 120.00055 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99830 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47285 * 60.00087 * 23 21 19 25 25 H 1.48498 * 109.46917 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47384 * 299.99929 * 23 21 19 27 27 N 1.34400 * 108.46240 * 0.02562 * 7 6 5 28 28 N 1.28765 * 109.52243 * 359.97438 * 27 7 6 29 29 H 1.09002 * 109.47214 * 300.00191 * 1 2 3 30 30 H 1.08998 * 109.47104 * 60.00055 * 1 2 3 31 31 H 1.08995 * 109.47372 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46582 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47160 * 299.99910 * 3 2 1 34 34 H 1.08996 * 109.46911 * 60.00002 * 3 2 1 35 35 H 1.08997 * 109.46884 * 300.00044 * 4 2 1 36 36 H 1.08998 * 109.47273 * 60.00035 * 4 2 1 37 37 H 1.08997 * 109.46722 * 179.97438 * 4 2 1 38 38 H 1.08000 * 126.57968 * 0.02562 * 6 5 2 39 39 H 1.08998 * 109.58250 * 353.37201 * 11 10 8 40 40 H 1.09000 * 109.58315 * 113.79700 * 11 10 8 41 41 H 1.09003 * 109.49662 * 65.32115 * 12 11 10 42 42 H 1.08995 * 109.49464 * 185.41332 * 12 11 10 43 43 H 1.09003 * 109.45987 * 181.38357 * 13 12 11 44 44 H 1.08992 * 109.46491 * 301.35990 * 13 12 11 45 45 H 1.09002 * 109.49583 * 58.58698 * 14 13 12 46 46 H 1.09000 * 109.49469 * 178.68167 * 14 13 12 47 47 H 1.08996 * 109.46997 * 47.75129 * 17 15 10 48 48 H 1.09003 * 109.47020 * 167.75029 * 17 15 10 49 49 H 0.97004 * 120.00288 * 355.42906 * 18 17 15 50 50 H 0.96994 * 119.99790 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 2.0183 -0.6906 1.1962 6 6 2.0220 -2.0216 1.4105 7 6 2.5637 -2.2216 2.6484 8 6 2.7605 -3.5290 3.3027 9 8 2.3215 -4.5390 2.7871 10 7 3.4268 -3.6041 4.4718 11 6 3.8953 -2.3856 5.1460 12 6 5.3951 -2.5227 5.4261 13 6 5.6476 -3.8120 6.2111 14 6 5.2000 -5.0148 5.3772 15 6 3.6931 -4.9056 5.0994 16 1 3.1398 -4.9799 6.0356 17 6 3.2611 -6.0287 4.1545 18 7 1.7982 -6.0891 4.1045 19 6 1.1777 -6.9596 3.2487 20 1 1.7669 -7.6019 2.6109 21 6 -0.2084 -7.0165 3.2009 22 7 -0.9264 -6.2334 3.9778 23 14 -1.0547 -8.2045 2.0339 24 1 -0.6498 -9.5948 2.3631 25 1 -2.5271 -8.0711 2.1735 26 1 -0.6602 -7.8917 0.6369 27 7 2.8814 -1.0253 3.1722 28 7 2.5719 -0.0944 2.3381 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 -1.7489 -1.2492 36 1 1.6767 -0.2075 -2.1393 37 1 3.1300 -0.7209 -1.2495 38 1 1.6659 -2.7836 0.7331 39 1 3.7209 -1.5225 4.5035 40 1 3.3581 -2.2586 6.0859 41 1 5.9397 -2.5586 4.4825 42 1 5.7356 -1.6682 6.0108 43 1 6.7112 -3.8996 6.4330 44 1 5.0831 -3.7862 7.1430 45 1 5.7464 -5.0273 4.4341 46 1 5.4017 -5.9340 5.9273 47 1 3.6510 -5.8333 3.1556 48 1 3.6518 -6.9794 4.5175 49 1 1.2690 -5.5125 4.6775 50 1 -1.8949 -6.2735 3.9446 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673106772.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:32 Heat of formation + Delta-G solvation = 121.422435 kcal Electronic energy + Delta-G solvation = -30977.007988 eV Core-core repulsion = 27043.945371 eV Total energy + Delta-G solvation = -3933.062617 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -42.10752 -39.69128 -37.51155 -36.66979 -34.36077 -32.62260 -31.89425 -31.72025 -30.22979 -29.64144 -27.84767 -27.78492 -26.01160 -24.29859 -24.00638 -22.81343 -22.48427 -21.00082 -20.54347 -20.08314 -18.68401 -17.14951 -16.64241 -15.97436 -15.93839 -15.45174 -14.94055 -14.60969 -14.49618 -14.40849 -14.15856 -13.88399 -13.78008 -13.42748 -13.34112 -12.91603 -12.82092 -12.79170 -12.61826 -12.51492 -12.18765 -12.10809 -12.00438 -11.97776 -11.73050 -11.65014 -11.33509 -11.18782 -10.79474 -10.72532 -10.64070 -10.60503 -10.23914 -10.21232 -9.82972 -9.59848 -9.43493 -8.99968 -8.56535 -8.40892 -7.85070 -6.41190 -5.46895 -2.66034 1.38025 2.06431 2.12573 3.53986 3.57975 3.61363 3.62915 4.01420 4.06107 4.31269 4.41850 4.47351 4.80800 4.87152 5.04447 5.05852 5.10240 5.12594 5.21182 5.24899 5.28081 5.31376 5.33048 5.38759 5.41569 5.49196 5.63253 5.67414 5.69271 5.80025 5.82181 5.87612 5.89421 5.98549 6.06970 6.13577 6.20635 6.27035 6.31338 6.50713 6.55736 6.64716 6.68609 6.88417 7.06611 7.42828 7.93746 8.06315 8.25050 8.70727 9.05914 9.81931 10.42558 10.77611 11.77350 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.008028 B = 0.005149 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3486.803178 B = 5436.514207 C = 8338.904884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.171 3.829 3 C -0.146 4.146 4 C -0.163 4.163 5 N -0.352 5.352 6 C 0.088 3.912 7 C -0.077 4.077 8 C 0.555 3.445 9 O -0.437 6.437 10 N -0.599 5.599 11 C 0.072 3.928 12 C -0.129 4.129 13 C -0.119 4.119 14 C -0.125 4.125 15 C 0.143 3.857 16 H 0.068 0.932 17 C 0.161 3.839 18 N -0.694 5.694 19 C -0.195 4.195 20 H 0.063 0.937 21 C -0.024 4.024 22 N -0.941 5.941 23 Si 0.899 3.101 24 H -0.290 1.290 25 H -0.295 1.295 26 H -0.291 1.291 27 N -0.216 5.216 28 N -0.079 5.079 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.068 0.932 38 H 0.199 0.801 39 H 0.140 0.860 40 H 0.054 0.946 41 H 0.060 0.940 42 H 0.066 0.934 43 H 0.057 0.943 44 H 0.061 0.939 45 H 0.064 0.936 46 H 0.071 0.929 47 H 0.042 0.958 48 H 0.011 0.989 49 H 0.379 0.621 50 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.593 16.114 -6.009 20.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.088 3.912 3 C -0.204 4.204 4 C -0.221 4.221 5 N -0.139 5.139 6 C -0.068 4.068 7 C -0.216 4.216 8 C 0.338 3.662 9 O -0.304 6.304 10 N -0.336 5.336 11 C -0.052 4.052 12 C -0.168 4.168 13 C -0.156 4.156 14 C -0.164 4.164 15 C 0.039 3.961 16 H 0.086 0.914 17 C 0.033 3.967 18 N -0.337 5.337 19 C -0.327 4.327 20 H 0.081 0.919 21 C -0.218 4.218 22 N -0.593 5.593 23 Si 0.732 3.268 24 H -0.218 1.218 25 H -0.222 1.222 26 H -0.219 1.219 27 N -0.089 5.089 28 N -0.057 5.057 29 H 0.087 0.913 30 H 0.101 0.899 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.104 0.896 37 H 0.087 0.913 38 H 0.216 0.784 39 H 0.156 0.844 40 H 0.073 0.927 41 H 0.079 0.921 42 H 0.084 0.916 43 H 0.076 0.924 44 H 0.080 0.920 45 H 0.083 0.917 46 H 0.089 0.911 47 H 0.059 0.941 48 H 0.029 0.971 49 H 0.213 0.787 50 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 10.661 16.741 -5.842 20.689 hybrid contribution -1.093 -1.227 -0.897 1.872 sum 9.568 15.515 -6.739 19.433 Atomic orbital electron populations 1.22295 0.91970 1.04054 1.03753 1.21016 0.95191 0.93859 0.81085 1.21969 1.02344 0.92495 1.03596 1.22292 1.02493 1.01599 0.95728 1.50657 1.42724 1.05325 1.15240 1.23229 0.98530 0.86542 0.98506 1.21940 1.10453 0.93906 0.95303 1.17035 0.80528 0.85990 0.82654 1.91349 1.44833 1.31809 1.62365 1.47582 1.57476 1.06699 1.21828 1.22668 0.93092 0.90083 0.99339 1.21868 0.97232 0.97486 1.00188 1.21526 1.00474 0.94970 0.98668 1.21971 0.95998 0.98135 1.00338 1.21574 0.94229 0.83363 0.96915 0.91386 1.20869 0.87501 0.92169 0.96131 1.42214 0.99092 1.45827 1.46534 1.19066 0.89227 1.11149 1.13276 0.91897 1.24566 0.96168 1.00453 1.00643 1.69648 1.04434 1.42386 1.42799 0.86360 0.78509 0.80960 0.81002 1.21763 1.22151 1.21871 1.74028 1.14512 0.98635 1.21692 1.81846 1.15947 1.17809 0.90103 0.91261 0.89894 0.91054 0.91380 0.90389 0.90721 0.90910 0.89630 0.91277 0.78420 0.84370 0.92736 0.92142 0.91550 0.92382 0.92014 0.91717 0.91072 0.94077 0.97119 0.78734 0.94169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.36 8.74 37.16 0.32 -1.03 16 2 C 0.17 1.53 1.25 -131.81 -0.16 1.37 16 3 C -0.15 -1.10 8.11 37.16 0.30 -0.79 16 4 C -0.16 -1.17 8.30 37.16 0.31 -0.86 16 5 N -0.35 -4.54 3.44 -48.35 -0.17 -4.71 16 6 C 0.09 1.33 10.43 -16.84 -0.18 1.15 16 7 C -0.08 -1.35 6.77 -83.55 -0.57 -1.92 16 8 C 0.56 11.27 7.42 -12.48 -0.09 11.17 16 9 O -0.44 -10.54 10.24 5.28 0.05 -10.49 16 10 N -0.60 -10.80 2.97 -166.18 -0.49 -11.29 16 11 C 0.07 1.09 6.30 -3.71 -0.02 1.07 16 12 C -0.13 -1.61 6.08 -26.61 -0.16 -1.77 16 13 C -0.12 -1.43 5.88 -26.69 -0.16 -1.59 16 14 C -0.13 -1.77 5.37 -26.38 -0.14 -1.91 16 15 C 0.14 2.57 2.93 -67.38 -0.20 2.37 16 16 H 0.07 1.28 8.14 -51.92 -0.42 0.86 16 17 C 0.16 3.54 4.90 -4.04 -0.02 3.52 16 18 N -0.69 -18.72 3.26 -59.91 -0.20 -18.91 16 19 C -0.19 -5.76 9.17 -15.06 -0.14 -5.90 16 20 H 0.06 1.83 7.83 -52.49 -0.41 1.42 16 21 C -0.02 -0.74 5.50 -17.43 -0.10 -0.83 16 22 N -0.94 -30.00 13.06 55.49 0.72 -29.28 16 23 Si 0.90 23.61 29.55 -169.99 -5.02 18.59 16 24 H -0.29 -7.50 7.11 56.52 0.40 -7.09 16 25 H -0.30 -7.81 7.11 56.52 0.40 -7.40 16 26 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 27 N -0.22 -3.56 8.64 32.84 0.28 -3.28 16 28 N -0.08 -1.18 12.91 60.35 0.78 -0.40 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.63 8.06 -51.93 -0.42 0.21 16 35 H 0.07 0.56 7.44 -51.93 -0.39 0.17 16 36 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.20 2.77 7.63 -52.49 -0.40 2.37 16 39 H 0.14 2.16 3.63 -129.05 -0.47 1.70 16 40 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 45 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 46 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 47 H 0.04 0.97 6.38 -51.93 -0.33 0.63 16 48 H 0.01 0.24 8.11 -51.93 -0.42 -0.18 16 49 H 0.38 11.02 7.60 -40.82 -0.31 10.71 16 50 H 0.25 7.72 8.31 -40.82 -0.34 7.38 16 LS Contribution 389.66 15.07 5.87 5.87 Total: -1.00 -35.18 389.66 -7.79 -42.96 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -8.62 Total: 6.90 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: -1.00 Total: 4.04 kcal Atomic # 7 Polarization: -68.80 SS G_CDS: 0.93 Total: -67.87 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.05 Total: -10.49 kcal Atomic # 14 Polarization: 23.61 SS G_CDS: -5.02 Total: 18.59 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.18 -7.79 -42.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673106772.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.387 kcal (2) G-P(sol) polarization free energy of solvation -35.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds