Wall clock time and date at job start Tue Mar 31 2020 20:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46973 * 2 1 4 4 C 1.53003 * 109.46949 * 240.00013 * 2 1 3 5 5 N 1.46498 * 109.46994 * 120.00099 * 2 1 3 6 6 C 1.34816 * 126.59611 * 74.99577 * 5 2 1 7 7 C 1.36591 * 106.83964 * 179.97438 * 6 5 2 8 8 C 1.47521 * 125.77082 * 179.73525 * 7 6 5 9 9 O 1.21594 * 119.99832 * 353.46088 * 8 7 6 10 10 N 1.34772 * 120.00194 * 173.45496 * 8 7 6 11 11 C 1.46932 * 120.63009 * 3.56158 * 10 8 7 12 12 C 1.53193 * 108.77522 * 233.58156 * 11 10 8 13 13 C 1.53037 * 109.31531 * 305.36453 * 12 11 10 14 14 C 1.53051 * 109.53591 * 61.36561 * 13 12 11 15 15 C 1.46924 * 120.63260 * 183.28270 * 10 8 7 16 16 H 1.09008 * 109.58731 * 246.20598 * 15 10 8 17 17 C 1.53005 * 109.58706 * 6.62670 * 15 10 8 18 18 N 1.46499 * 109.47011 * 287.75199 * 17 15 10 19 19 C 1.36935 * 120.00112 * 175.42492 * 18 17 15 20 20 H 1.08001 * 119.99463 * 0.02562 * 19 18 17 21 21 C 1.38812 * 120.00266 * 180.02562 * 19 18 17 22 22 N 1.31614 * 120.00055 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99830 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47285 * 60.00087 * 23 21 19 25 25 H 1.48498 * 109.46917 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47384 * 299.99929 * 23 21 19 27 27 N 1.34400 * 108.46240 * 0.02562 * 7 6 5 28 28 N 1.28765 * 109.52243 * 359.97438 * 27 7 6 29 29 H 1.09002 * 109.47214 * 300.00191 * 1 2 3 30 30 H 1.08998 * 109.47104 * 60.00055 * 1 2 3 31 31 H 1.08995 * 109.47372 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46582 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47160 * 299.99910 * 3 2 1 34 34 H 1.08996 * 109.46911 * 60.00002 * 3 2 1 35 35 H 1.08997 * 109.46884 * 300.00044 * 4 2 1 36 36 H 1.08998 * 109.47273 * 60.00035 * 4 2 1 37 37 H 1.08997 * 109.46722 * 179.97438 * 4 2 1 38 38 H 1.08000 * 126.57968 * 0.02562 * 6 5 2 39 39 H 1.08998 * 109.58250 * 353.37201 * 11 10 8 40 40 H 1.09000 * 109.58315 * 113.79700 * 11 10 8 41 41 H 1.09003 * 109.49662 * 65.32115 * 12 11 10 42 42 H 1.08995 * 109.49464 * 185.41332 * 12 11 10 43 43 H 1.09003 * 109.45987 * 181.38357 * 13 12 11 44 44 H 1.08992 * 109.46491 * 301.35990 * 13 12 11 45 45 H 1.09002 * 109.49583 * 58.58698 * 14 13 12 46 46 H 1.09000 * 109.49469 * 178.68167 * 14 13 12 47 47 H 1.08996 * 109.46997 * 47.75129 * 17 15 10 48 48 H 1.09003 * 109.47020 * 167.75029 * 17 15 10 49 49 H 0.97004 * 120.00288 * 355.42906 * 18 17 15 50 50 H 0.96994 * 119.99790 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 2.0183 -0.6906 1.1962 6 6 2.0220 -2.0216 1.4105 7 6 2.5637 -2.2216 2.6484 8 6 2.7605 -3.5290 3.3027 9 8 2.3215 -4.5390 2.7871 10 7 3.4268 -3.6041 4.4718 11 6 3.8953 -2.3856 5.1460 12 6 5.3951 -2.5227 5.4261 13 6 5.6476 -3.8120 6.2111 14 6 5.2000 -5.0148 5.3772 15 6 3.6931 -4.9056 5.0994 16 1 3.1398 -4.9799 6.0356 17 6 3.2611 -6.0287 4.1545 18 7 1.7982 -6.0891 4.1045 19 6 1.1777 -6.9596 3.2487 20 1 1.7669 -7.6019 2.6109 21 6 -0.2084 -7.0165 3.2009 22 7 -0.9264 -6.2334 3.9778 23 14 -1.0547 -8.2045 2.0339 24 1 -0.6498 -9.5948 2.3631 25 1 -2.5271 -8.0711 2.1735 26 1 -0.6602 -7.8917 0.6369 27 7 2.8814 -1.0253 3.1722 28 7 2.5719 -0.0944 2.3381 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 -1.7489 -1.2492 36 1 1.6767 -0.2075 -2.1393 37 1 3.1300 -0.7209 -1.2495 38 1 1.6659 -2.7836 0.7331 39 1 3.7209 -1.5225 4.5035 40 1 3.3581 -2.2586 6.0859 41 1 5.9397 -2.5586 4.4825 42 1 5.7356 -1.6682 6.0108 43 1 6.7112 -3.8996 6.4330 44 1 5.0831 -3.7862 7.1430 45 1 5.7464 -5.0273 4.4341 46 1 5.4017 -5.9340 5.9273 47 1 3.6510 -5.8333 3.1556 48 1 3.6518 -6.9794 4.5175 49 1 1.2690 -5.5125 4.6775 50 1 -1.8949 -6.2735 3.9446 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673106772.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:29 Heat of formation + Delta-G solvation = 98.456712 kcal Electronic energy + Delta-G solvation = -30978.003856 eV Core-core repulsion = 27043.945371 eV Total energy + Delta-G solvation = -3934.058485 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 2.79 seconds Orbital eigenvalues (eV) -43.31728 -41.14580 -38.36919 -38.07541 -36.29097 -33.96574 -33.59801 -32.91182 -31.62046 -31.30178 -28.48910 -28.45402 -27.63482 -25.93208 -25.11418 -24.32255 -24.02854 -22.50191 -21.71918 -21.18882 -20.02472 -18.91647 -17.99474 -17.29379 -17.08276 -16.85721 -16.61504 -16.06048 -15.75024 -15.42202 -15.30826 -15.18568 -15.03175 -14.99364 -14.77869 -14.49720 -13.97968 -13.71889 -13.63159 -13.51539 -13.40625 -13.27782 -13.14803 -13.05605 -12.82898 -12.80342 -12.71425 -12.46335 -12.40084 -12.14346 -12.02010 -11.95311 -11.76142 -11.68251 -11.33888 -11.25852 -10.83961 -10.79475 -10.27179 -10.01205 -9.36511 -8.56276 -7.76824 -4.95765 0.18722 0.75797 1.05164 1.46123 1.50549 1.56031 2.15048 2.51290 2.66682 3.21170 3.25201 3.56053 3.62872 3.68381 3.75398 3.87721 3.91327 4.01948 4.12840 4.18651 4.20602 4.34876 4.39545 4.49693 4.53363 4.57660 4.60549 4.65051 4.66086 4.72876 4.77381 4.78556 4.92660 5.00908 5.04059 5.07388 5.14271 5.15254 5.16654 5.22860 5.25993 5.32003 5.46122 5.53595 5.58605 5.59494 5.97050 6.42775 6.62488 6.96291 7.47838 7.54327 8.27473 8.51941 9.48288 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.008028 B = 0.005149 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3486.803178 B = 5436.514207 C = 8338.904884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.158 3.842 3 C -0.142 4.142 4 C -0.160 4.160 5 N -0.335 5.335 6 C 0.092 3.908 7 C -0.104 4.104 8 C 0.553 3.447 9 O -0.490 6.490 10 N -0.598 5.598 11 C 0.067 3.933 12 C -0.122 4.122 13 C -0.113 4.113 14 C -0.117 4.117 15 C 0.145 3.855 16 H 0.058 0.942 17 C 0.165 3.835 18 N -0.702 5.702 19 C -0.195 4.195 20 H 0.062 0.938 21 C -0.087 4.087 22 N -0.979 5.979 23 Si 0.965 3.035 24 H -0.281 1.281 25 H -0.299 1.299 26 H -0.284 1.284 27 N -0.221 5.221 28 N -0.080 5.080 29 H 0.055 0.945 30 H 0.117 0.883 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.111 0.889 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.117 0.883 37 H 0.065 0.935 38 H 0.205 0.795 39 H 0.137 0.863 40 H 0.055 0.945 41 H 0.056 0.944 42 H 0.093 0.907 43 H 0.086 0.914 44 H 0.065 0.935 45 H 0.062 0.938 46 H 0.085 0.915 47 H 0.027 0.973 48 H 0.016 0.984 49 H 0.364 0.636 50 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.976 17.487 -7.035 22.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.078 3.922 3 C -0.200 4.200 4 C -0.218 4.218 5 N -0.123 5.123 6 C -0.066 4.066 7 C -0.244 4.244 8 C 0.338 3.662 9 O -0.361 6.361 10 N -0.333 5.333 11 C -0.056 4.056 12 C -0.160 4.160 13 C -0.151 4.151 14 C -0.156 4.156 15 C 0.041 3.959 16 H 0.076 0.924 17 C 0.038 3.962 18 N -0.342 5.342 19 C -0.327 4.327 20 H 0.080 0.920 21 C -0.277 4.277 22 N -0.633 5.633 23 Si 0.796 3.204 24 H -0.207 1.207 25 H -0.225 1.225 26 H -0.211 1.211 27 N -0.094 5.094 28 N -0.059 5.059 29 H 0.074 0.926 30 H 0.136 0.864 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.130 0.870 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.136 0.864 37 H 0.084 0.916 38 H 0.222 0.778 39 H 0.153 0.847 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.111 0.889 43 H 0.104 0.896 44 H 0.084 0.916 45 H 0.081 0.919 46 H 0.104 0.896 47 H 0.045 0.955 48 H 0.033 0.967 49 H 0.196 0.804 50 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 12.115 18.150 -6.861 22.875 hybrid contribution -1.469 -1.504 -0.640 2.198 sum 10.646 16.646 -7.501 21.135 Atomic orbital electron populations 1.22323 0.91260 1.03441 1.04816 1.21585 0.95749 0.94788 0.80116 1.21997 1.02001 0.91279 1.04708 1.22327 1.02282 1.01383 0.95806 1.51035 1.41086 1.04564 1.15566 1.23315 0.97700 0.87674 0.97870 1.21722 1.12771 0.93428 0.96437 1.17442 0.79610 0.86441 0.82745 1.91307 1.47103 1.33614 1.64100 1.47750 1.56550 1.07706 1.21296 1.22858 0.95255 0.88647 0.98861 1.21830 0.94669 0.98926 1.00592 1.21518 1.02181 0.93296 0.98074 1.21924 0.92423 1.00188 1.01017 1.21530 0.97019 0.82229 0.95103 0.92368 1.20898 0.84881 0.93931 0.96442 1.42292 1.00894 1.45160 1.45865 1.19377 0.89669 1.10823 1.12871 0.91996 1.25315 0.96829 1.02754 1.02812 1.69832 1.04051 1.44529 1.44853 0.85302 0.76902 0.79119 0.79084 1.20719 1.22502 1.21125 1.74014 1.14952 0.98191 1.22197 1.81752 1.15862 1.17656 0.90641 0.92605 0.86421 0.92495 0.91895 0.87002 0.91887 0.91674 0.86410 0.91629 0.77786 0.84668 0.92678 0.92502 0.88904 0.89575 0.91596 0.91877 0.89607 0.95479 0.96663 0.80446 0.94911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.42 8.74 71.98 0.63 -1.79 16 2 C 0.16 2.57 1.25 3.61 0.00 2.58 16 3 C -0.14 -1.80 8.11 71.98 0.58 -1.22 16 4 C -0.16 -1.96 8.30 71.98 0.60 -1.36 16 5 N -0.34 -8.53 3.44 -306.89 -1.06 -9.58 16 6 C 0.09 2.83 10.43 83.85 0.87 3.71 16 7 C -0.10 -3.79 6.77 40.81 0.28 -3.51 16 8 C 0.55 23.39 7.42 86.69 0.64 24.03 16 9 O -0.49 -24.87 10.24 -4.01 -0.04 -24.91 16 10 N -0.60 -21.97 2.97 -797.94 -2.37 -24.34 16 11 C 0.07 1.98 6.30 86.36 0.54 2.53 16 12 C -0.12 -2.76 6.08 30.67 0.19 -2.57 16 13 C -0.11 -2.41 5.88 30.62 0.18 -2.23 16 14 C -0.12 -3.12 5.37 30.82 0.17 -2.96 16 15 C 0.14 5.27 2.93 45.12 0.13 5.40 16 16 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 17 C 0.16 7.48 4.90 86.38 0.42 7.90 16 18 N -0.70 -39.34 3.26 -343.45 -1.12 -40.46 16 19 C -0.19 -11.82 9.17 84.03 0.77 -11.05 16 20 H 0.06 3.69 7.83 -2.91 -0.02 3.66 16 21 C -0.09 -5.38 5.50 84.86 0.47 -4.92 16 22 N -0.98 -64.45 13.06 21.65 0.28 -64.17 16 23 Si 0.97 49.65 29.55 68.60 2.03 51.67 16 24 H -0.28 -13.85 7.11 99.48 0.71 -13.14 16 25 H -0.30 -15.38 7.11 99.48 0.71 -14.67 16 26 H -0.28 -14.15 7.11 99.48 0.71 -13.45 16 27 N -0.22 -7.35 8.64 -50.00 -0.43 -7.78 16 28 N -0.08 -2.39 12.91 37.02 0.48 -1.91 16 29 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.06 0.96 8.06 -2.39 -0.02 0.95 16 35 H 0.06 0.92 7.44 -2.39 -0.02 0.90 16 36 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.21 5.96 7.63 -2.91 -0.02 5.94 16 39 H 0.14 4.21 3.63 -102.18 -0.37 3.84 16 40 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 46 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 47 H 0.03 1.33 6.38 -2.39 -0.02 1.31 16 48 H 0.02 0.69 8.11 -2.39 -0.02 0.67 16 49 H 0.36 22.19 7.60 -92.71 -0.70 21.49 16 50 H 0.24 15.55 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -79.45 389.66 4.12 -75.33 By element: Atomic # 1 Polarization: 31.74 SS G_CDS: -0.13 Total: 31.60 kcal Atomic # 6 Polarization: 8.07 SS G_CDS: 6.48 Total: 14.54 kcal Atomic # 7 Polarization: -144.03 SS G_CDS: -4.21 Total: -148.24 kcal Atomic # 8 Polarization: -24.87 SS G_CDS: -0.04 Total: -24.91 kcal Atomic # 14 Polarization: 49.65 SS G_CDS: 2.03 Total: 51.67 kcal Total: -79.45 4.12 -75.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673106772.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.785 kcal (2) G-P(sol) polarization free energy of solvation -79.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.79 seconds