Wall clock time and date at job start Tue Mar 31 2020 20:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46859 * 2 1 4 4 C 1.52996 * 109.47399 * 120.00070 * 2 1 3 5 5 C 1.53001 * 109.47185 * 65.00443 * 4 2 1 6 6 N 1.46502 * 109.47403 * 179.97438 * 5 4 2 7 7 C 1.34816 * 126.59239 * 125.28214 * 6 5 4 8 8 C 1.36596 * 106.83598 * 180.15057 * 7 6 5 9 9 C 1.47521 * 125.77041 * 179.83903 * 8 7 6 10 10 O 1.21603 * 119.99881 * 359.72336 * 9 8 7 11 11 N 1.34773 * 120.00175 * 179.97438 * 9 8 7 12 12 C 1.46505 * 120.00095 * 179.72702 * 11 9 8 13 13 C 1.53791 * 113.61264 * 254.13685 * 12 11 9 14 14 C 1.54049 * 86.98640 * 270.83894 * 13 12 11 15 15 C 1.52997 * 113.62029 * 220.02291 * 14 13 12 16 16 N 1.46498 * 109.46927 * 272.49747 * 15 14 13 17 17 C 1.36939 * 119.99677 * 179.97438 * 16 15 14 18 18 H 1.07995 * 120.00162 * 0.02562 * 17 16 15 19 19 C 1.38814 * 119.99895 * 179.97438 * 17 16 15 20 20 N 1.31622 * 119.99964 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00318 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46631 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.47098 * 119.99746 * 21 19 17 24 24 H 1.48500 * 109.47054 * 240.00084 * 21 19 17 25 25 C 1.53780 * 113.61139 * 156.53403 * 12 11 9 26 26 N 1.34402 * 108.45863 * 359.58403 * 8 7 6 27 27 N 1.28754 * 109.52469 * 0.25698 * 26 8 7 28 28 H 1.08996 * 109.46947 * 299.99094 * 1 2 3 29 29 H 1.08993 * 109.47662 * 60.00219 * 1 2 3 30 30 H 1.09006 * 109.46894 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47097 * 240.00191 * 2 1 3 32 32 H 1.09001 * 109.47159 * 179.97438 * 3 2 1 33 33 H 1.08992 * 109.47545 * 300.00242 * 3 2 1 34 34 H 1.09001 * 109.47111 * 60.00199 * 3 2 1 35 35 H 1.08993 * 109.47239 * 305.00117 * 4 2 1 36 36 H 1.09006 * 109.47289 * 185.00296 * 4 2 1 37 37 H 1.09001 * 109.47571 * 59.99744 * 5 4 2 38 38 H 1.09006 * 109.46887 * 300.00099 * 5 4 2 39 39 H 1.08003 * 126.58445 * 359.97438 * 7 6 5 40 40 H 0.97000 * 120.00112 * 359.73137 * 11 9 8 41 41 H 1.08996 * 112.84787 * 25.33045 * 12 11 9 42 42 H 1.08997 * 113.60978 * 25.43765 * 13 12 11 43 43 H 1.08997 * 113.61248 * 156.33480 * 13 12 11 44 44 H 1.08998 * 113.68827 * 89.12900 * 14 13 12 45 45 H 1.09004 * 109.46774 * 32.49316 * 15 14 13 46 46 H 1.08999 * 109.47069 * 152.49681 * 15 14 13 47 47 H 0.96996 * 119.99990 * 359.97438 * 16 15 14 48 48 H 0.97003 * 119.99943 * 179.97438 * 20 19 17 49 49 H 1.09008 * 113.60917 * 203.66305 * 25 12 11 50 50 H 1.08995 * 113.61530 * 334.56471 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6354 -2.1955 1.1879 6 7 2.1243 -2.8863 2.3837 7 6 1.3885 -3.6102 3.2509 8 6 2.2452 -4.0664 4.2120 9 6 1.8758 -4.9022 5.3702 10 8 0.7186 -5.2388 5.5326 11 7 2.8199 -5.2884 6.2510 12 6 2.4520 -6.1134 7.4044 13 6 2.4418 -5.3425 8.7351 14 6 3.9290 -5.7204 8.8717 15 6 4.3365 -6.1003 10.2967 16 7 4.7211 -4.8934 11.0327 17 6 5.1253 -4.9871 12.3377 18 1 5.1610 -5.9506 12.8242 19 6 5.4902 -3.8436 13.0351 20 7 5.4471 -2.6693 12.4421 21 14 6.0423 -3.9714 14.8151 22 1 6.0031 -5.3924 15.2446 23 1 7.4286 -3.4546 14.9416 24 1 5.1345 -3.1689 15.6737 25 6 3.6225 -6.9315 7.9750 26 7 3.4826 -3.6298 3.9211 27 7 3.4484 -2.9267 2.8431 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5137 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6766 1.9564 0.8900 35 1 1.6055 -0.2618 2.1369 36 1 3.1264 -0.6443 1.2951 37 1 2.0700 -2.6550 0.3001 38 1 0.5490 -2.2725 1.1419 39 1 0.3252 -3.7920 3.1977 40 1 3.7430 -5.0202 6.1213 41 1 1.5503 -6.7016 7.2337 42 1 2.2707 -4.2724 8.6183 43 1 1.8050 -5.7935 9.4961 44 1 4.6076 -4.9998 8.4153 45 1 3.4965 -6.5801 10.7990 46 1 5.1806 -6.7890 10.2617 47 1 4.6894 -4.0281 10.5957 48 1 5.7018 -1.8702 12.9295 49 1 3.3078 -7.8162 8.5287 50 1 4.4038 -7.1433 7.2452 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674579478.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:15 Heat of formation + Delta-G solvation = 73.249538 kcal Electronic energy + Delta-G solvation = -27669.245925 eV Core-core repulsion = 23734.094375 eV Total energy + Delta-G solvation = -3935.151550 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -42.47579 -39.98503 -38.18318 -37.74614 -34.72251 -34.43344 -33.03653 -31.34519 -30.77122 -29.78234 -27.78542 -26.82083 -25.42600 -25.11280 -24.23470 -23.01072 -22.18346 -21.35460 -20.85195 -20.52701 -18.98170 -18.32337 -16.99502 -16.61176 -16.43818 -16.05065 -15.84251 -15.15679 -14.99719 -14.79585 -14.59769 -14.36592 -14.27491 -13.89161 -13.74111 -13.64774 -13.25914 -12.93539 -12.72918 -12.62166 -12.50243 -12.29043 -12.11345 -12.06415 -11.66858 -11.59318 -11.56073 -11.29950 -11.19230 -10.98342 -10.80111 -10.64461 -10.43807 -10.27728 -10.15063 -10.01045 -9.75668 -9.57045 -9.54292 -8.93398 -8.78281 -6.83257 -5.69780 -2.97714 0.85829 1.52059 1.67503 3.05333 3.19080 3.47643 3.52902 3.55429 3.77484 3.95056 4.07982 4.22359 4.34839 4.46688 4.56229 4.61614 4.63751 4.69431 4.76430 4.90256 4.95030 5.01019 5.07792 5.17704 5.19704 5.22290 5.25528 5.32630 5.37583 5.48871 5.60826 5.64434 5.69658 5.74450 5.80875 5.95017 6.01424 6.02785 6.09278 6.19605 6.32173 6.38612 6.50351 6.69051 6.86661 7.02006 7.41736 7.73842 7.76628 8.13182 8.49447 9.60336 10.20521 10.54879 11.53272 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014240 B = 0.001822 C = 0.001671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.761961 B =15360.436507 C =16753.697766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.093 4.093 3 C -0.149 4.149 4 C -0.130 4.130 5 C 0.119 3.881 6 N -0.361 5.361 7 C 0.093 3.907 8 C -0.100 4.100 9 C 0.607 3.393 10 O -0.542 6.542 11 N -0.692 5.692 12 C 0.116 3.884 13 C -0.138 4.138 14 C -0.114 4.114 15 C 0.162 3.838 16 N -0.732 5.732 17 C -0.237 4.237 18 H 0.070 0.930 19 C -0.017 4.017 20 N -0.934 5.934 21 Si 0.906 3.094 22 H -0.281 1.281 23 H -0.292 1.292 24 H -0.292 1.292 25 C -0.138 4.138 26 N -0.202 5.202 27 N -0.061 5.061 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.075 0.925 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.098 0.902 38 H 0.106 0.894 39 H 0.204 0.796 40 H 0.410 0.590 41 H 0.100 0.900 42 H 0.069 0.931 43 H 0.091 0.909 44 H 0.089 0.911 45 H 0.020 0.980 46 H 0.018 0.982 47 H 0.384 0.616 48 H 0.254 0.746 49 H 0.096 0.904 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.559 1.445 -30.769 32.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.112 4.112 3 C -0.206 4.206 4 C -0.169 4.169 5 C -0.001 4.001 6 N -0.146 5.146 7 C -0.064 4.064 8 C -0.240 4.240 9 C 0.391 3.609 10 O -0.418 6.418 11 N -0.342 5.342 12 C 0.011 3.989 13 C -0.177 4.177 14 C -0.133 4.133 15 C 0.035 3.965 16 N -0.376 5.376 17 C -0.368 4.368 18 H 0.088 0.912 19 C -0.212 4.212 20 N -0.583 5.583 21 Si 0.738 3.262 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.176 4.176 26 N -0.076 5.076 27 N -0.042 5.042 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.092 0.908 36 H 0.102 0.898 37 H 0.117 0.883 38 H 0.124 0.876 39 H 0.221 0.779 40 H 0.246 0.754 41 H 0.118 0.882 42 H 0.087 0.913 43 H 0.110 0.890 44 H 0.107 0.893 45 H 0.038 0.962 46 H 0.036 0.964 47 H 0.217 0.783 48 H 0.063 0.937 49 H 0.114 0.886 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -10.920 1.588 -30.771 32.689 hybrid contribution -0.270 0.289 0.881 0.965 sum -11.190 1.877 -29.890 31.971 Atomic orbital electron populations 1.21969 0.94925 1.01856 1.02477 1.21063 0.96028 0.96800 0.97297 1.21828 1.01356 0.95257 1.02151 1.21991 1.03263 0.92120 0.99490 1.22213 1.00657 0.93383 0.83865 1.50581 1.08005 1.35463 1.20519 1.23376 0.99979 0.93321 0.89769 1.21481 0.90001 1.10609 1.01891 1.16716 0.85108 0.78600 0.80426 1.90803 1.18548 1.56908 1.75587 1.45473 1.11687 1.52378 1.24635 1.21987 0.99034 0.92954 0.84925 1.23461 0.97349 1.00981 0.95887 1.22818 0.96424 0.96988 0.97036 1.20638 0.96418 0.90640 0.88813 1.42364 1.79976 1.04196 1.11050 1.19301 1.35999 0.93283 0.88233 0.91180 1.24745 1.02715 0.95398 0.98369 1.69679 1.54984 0.97407 1.36197 0.86121 0.77936 0.77142 0.85044 1.20578 1.21943 1.21945 1.23307 0.97352 0.98096 0.98854 1.74672 1.20165 1.05946 1.06839 1.81993 0.95511 1.19024 1.07649 0.92277 0.92216 0.92568 0.90634 0.92320 0.92313 0.92428 0.90763 0.89799 0.88339 0.87565 0.77917 0.75431 0.88156 0.91261 0.89027 0.89287 0.96213 0.96402 0.78306 0.93655 0.88605 0.91118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.43 8.95 37.16 0.33 -0.10 16 2 C -0.09 -0.30 2.92 -90.62 -0.26 -0.57 16 3 C -0.15 -0.58 9.19 37.16 0.34 -0.24 16 4 C -0.13 -0.60 4.89 -26.73 -0.13 -0.73 16 5 C 0.12 0.50 6.29 -4.04 -0.03 0.47 16 6 N -0.36 -2.97 3.69 -61.06 -0.23 -3.20 16 7 C 0.09 0.82 11.27 -16.83 -0.19 0.63 16 8 C -0.10 -1.22 6.99 -83.55 -0.58 -1.80 16 9 C 0.61 8.37 7.82 -12.48 -0.10 8.27 16 10 O -0.54 -8.59 16.48 5.27 0.09 -8.50 16 11 N -0.69 -9.10 5.26 -54.05 -0.28 -9.38 16 12 C 0.12 1.55 4.30 -67.11 -0.29 1.26 16 13 C -0.14 -2.15 7.45 -25.77 -0.19 -2.34 16 14 C -0.11 -1.86 3.64 -89.67 -0.33 -2.18 16 15 C 0.16 3.33 6.10 -4.04 -0.02 3.30 16 16 N -0.73 -19.12 5.60 -59.91 -0.34 -19.45 16 17 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 18 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 19 C -0.02 -0.49 5.50 -17.43 -0.10 -0.59 16 20 N -0.93 -29.03 13.06 55.49 0.72 -28.30 16 21 Si 0.91 22.95 29.55 -169.99 -5.02 17.93 16 22 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 24 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 25 C -0.14 -1.75 7.38 -25.92 -0.19 -1.94 16 26 N -0.20 -2.65 12.04 32.85 0.40 -2.25 16 27 N -0.06 -0.72 13.65 60.35 0.82 0.10 16 28 H 0.06 0.20 8.14 -51.93 -0.42 -0.23 16 29 H 0.06 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.06 0.10 6.56 -51.93 -0.34 -0.24 16 31 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 33 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 34 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.10 0.30 8.14 -51.93 -0.42 -0.13 16 38 H 0.11 0.19 6.51 -51.93 -0.34 -0.15 16 39 H 0.20 1.15 8.06 -52.48 -0.42 0.73 16 40 H 0.41 5.12 8.39 -40.82 -0.34 4.78 16 41 H 0.10 1.35 7.50 -51.93 -0.39 0.96 16 42 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.09 1.42 7.90 -51.93 -0.41 1.01 16 44 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 45 H 0.02 0.41 7.85 -51.93 -0.41 0.00 16 46 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.38 10.57 7.67 -40.82 -0.31 10.26 16 48 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 49 H 0.10 1.12 8.10 -51.92 -0.42 0.70 16 50 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 413.86 15.07 6.24 6.24 Total: -1.00 -35.23 413.86 -7.92 -43.15 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -8.43 Total: 7.22 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: -1.89 Total: -3.54 kcal Atomic # 7 Polarization: -63.59 SS G_CDS: 1.10 Total: -62.49 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: 0.09 Total: -8.50 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.02 Total: 17.93 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -35.23 -7.92 -43.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674579478.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.398 kcal (2) G-P(sol) polarization free energy of solvation -35.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds