Wall clock time and date at job start Tue Mar 31 2020 20:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46859 * 2 1 4 4 C 1.52996 * 109.47399 * 120.00070 * 2 1 3 5 5 C 1.53001 * 109.47185 * 65.00443 * 4 2 1 6 6 N 1.46502 * 109.47403 * 179.97438 * 5 4 2 7 7 C 1.34816 * 126.59239 * 125.28214 * 6 5 4 8 8 C 1.36596 * 106.83598 * 180.15057 * 7 6 5 9 9 C 1.47521 * 125.77041 * 179.83903 * 8 7 6 10 10 O 1.21603 * 119.99881 * 359.72336 * 9 8 7 11 11 N 1.34773 * 120.00175 * 179.97438 * 9 8 7 12 12 C 1.46505 * 120.00095 * 179.72702 * 11 9 8 13 13 C 1.53791 * 113.61264 * 254.13685 * 12 11 9 14 14 C 1.54049 * 86.98640 * 270.83894 * 13 12 11 15 15 C 1.52997 * 113.62029 * 220.02291 * 14 13 12 16 16 N 1.46498 * 109.46927 * 272.49747 * 15 14 13 17 17 C 1.36939 * 119.99677 * 179.97438 * 16 15 14 18 18 H 1.07995 * 120.00162 * 0.02562 * 17 16 15 19 19 C 1.38814 * 119.99895 * 179.97438 * 17 16 15 20 20 N 1.31622 * 119.99964 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00318 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46631 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.47098 * 119.99746 * 21 19 17 24 24 H 1.48500 * 109.47054 * 240.00084 * 21 19 17 25 25 C 1.53780 * 113.61139 * 156.53403 * 12 11 9 26 26 N 1.34402 * 108.45863 * 359.58403 * 8 7 6 27 27 N 1.28754 * 109.52469 * 0.25698 * 26 8 7 28 28 H 1.08996 * 109.46947 * 299.99094 * 1 2 3 29 29 H 1.08993 * 109.47662 * 60.00219 * 1 2 3 30 30 H 1.09006 * 109.46894 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47097 * 240.00191 * 2 1 3 32 32 H 1.09001 * 109.47159 * 179.97438 * 3 2 1 33 33 H 1.08992 * 109.47545 * 300.00242 * 3 2 1 34 34 H 1.09001 * 109.47111 * 60.00199 * 3 2 1 35 35 H 1.08993 * 109.47239 * 305.00117 * 4 2 1 36 36 H 1.09006 * 109.47289 * 185.00296 * 4 2 1 37 37 H 1.09001 * 109.47571 * 59.99744 * 5 4 2 38 38 H 1.09006 * 109.46887 * 300.00099 * 5 4 2 39 39 H 1.08003 * 126.58445 * 359.97438 * 7 6 5 40 40 H 0.97000 * 120.00112 * 359.73137 * 11 9 8 41 41 H 1.08996 * 112.84787 * 25.33045 * 12 11 9 42 42 H 1.08997 * 113.60978 * 25.43765 * 13 12 11 43 43 H 1.08997 * 113.61248 * 156.33480 * 13 12 11 44 44 H 1.08998 * 113.68827 * 89.12900 * 14 13 12 45 45 H 1.09004 * 109.46774 * 32.49316 * 15 14 13 46 46 H 1.08999 * 109.47069 * 152.49681 * 15 14 13 47 47 H 0.96996 * 119.99990 * 359.97438 * 16 15 14 48 48 H 0.97003 * 119.99943 * 179.97438 * 20 19 17 49 49 H 1.09008 * 113.60917 * 203.66305 * 25 12 11 50 50 H 1.08995 * 113.61530 * 334.56471 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6354 -2.1955 1.1879 6 7 2.1243 -2.8863 2.3837 7 6 1.3885 -3.6102 3.2509 8 6 2.2452 -4.0664 4.2120 9 6 1.8758 -4.9022 5.3702 10 8 0.7186 -5.2388 5.5326 11 7 2.8199 -5.2884 6.2510 12 6 2.4520 -6.1134 7.4044 13 6 2.4418 -5.3425 8.7351 14 6 3.9290 -5.7204 8.8717 15 6 4.3365 -6.1003 10.2967 16 7 4.7211 -4.8934 11.0327 17 6 5.1253 -4.9871 12.3377 18 1 5.1610 -5.9506 12.8242 19 6 5.4902 -3.8436 13.0351 20 7 5.4471 -2.6693 12.4421 21 14 6.0423 -3.9714 14.8151 22 1 6.0031 -5.3924 15.2446 23 1 7.4286 -3.4546 14.9416 24 1 5.1345 -3.1689 15.6737 25 6 3.6225 -6.9315 7.9750 26 7 3.4826 -3.6298 3.9211 27 7 3.4484 -2.9267 2.8431 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5137 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6766 1.9564 0.8900 35 1 1.6055 -0.2618 2.1369 36 1 3.1264 -0.6443 1.2951 37 1 2.0700 -2.6550 0.3001 38 1 0.5490 -2.2725 1.1419 39 1 0.3252 -3.7920 3.1977 40 1 3.7430 -5.0202 6.1213 41 1 1.5503 -6.7016 7.2337 42 1 2.2707 -4.2724 8.6183 43 1 1.8050 -5.7935 9.4961 44 1 4.6076 -4.9998 8.4153 45 1 3.4965 -6.5801 10.7990 46 1 5.1806 -6.7890 10.2617 47 1 4.6894 -4.0281 10.5957 48 1 5.7018 -1.8702 12.9295 49 1 3.3078 -7.8162 8.5287 50 1 4.4038 -7.1433 7.2452 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674579478.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:12 Heat of formation + Delta-G solvation = 49.124607 kcal Electronic energy + Delta-G solvation = -27670.292061 eV Core-core repulsion = 23734.094375 eV Total energy + Delta-G solvation = -3936.197686 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 6.39 seconds Orbital eigenvalues (eV) -43.26374 -41.11170 -39.33820 -38.14999 -36.33417 -35.31279 -34.34556 -32.81734 -32.02587 -30.39094 -28.50054 -28.02968 -26.60869 -25.74212 -25.50834 -24.54714 -22.88927 -22.81642 -21.67916 -20.93319 -20.27234 -19.14113 -19.03985 -17.35402 -17.18716 -17.08547 -16.69470 -16.29025 -16.01372 -15.89969 -15.70881 -15.55200 -15.15813 -14.97096 -14.89153 -14.57186 -14.38887 -14.11503 -13.70087 -13.37023 -13.30264 -13.20199 -13.10714 -12.97586 -12.90454 -12.70587 -12.57764 -12.29095 -12.11632 -11.94116 -11.92012 -11.75094 -11.59712 -11.52732 -11.35456 -11.27773 -11.24667 -11.12947 -10.85162 -10.42267 -10.00384 -8.96906 -7.94227 -5.22725 0.13482 0.58280 1.08090 1.46934 1.48277 1.58524 2.06538 2.20195 2.56721 3.15240 3.30128 3.38768 3.59770 3.62545 3.74053 3.75360 3.91982 3.95607 3.97279 3.98241 4.02207 4.22632 4.31313 4.34708 4.45306 4.56111 4.63959 4.72561 4.77629 4.81020 4.86251 4.87872 4.91215 4.94921 4.96281 5.00703 5.04534 5.08877 5.17802 5.28981 5.29092 5.36979 5.41405 5.45316 5.49077 5.50155 5.67119 6.28443 6.39450 6.87822 7.09881 7.33946 8.12557 8.34634 9.29768 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014240 B = 0.001822 C = 0.001671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.761961 B =15360.436507 C =16753.697766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.086 4.086 3 C -0.152 4.152 4 C -0.126 4.126 5 C 0.111 3.889 6 N -0.347 5.347 7 C 0.111 3.889 8 C -0.128 4.128 9 C 0.608 3.392 10 O -0.566 6.566 11 N -0.692 5.692 12 C 0.127 3.873 13 C -0.141 4.141 14 C -0.115 4.115 15 C 0.160 3.840 16 N -0.746 5.746 17 C -0.244 4.244 18 H 0.077 0.923 19 C -0.081 4.081 20 N -0.972 5.972 21 Si 0.975 3.025 22 H -0.264 1.264 23 H -0.293 1.293 24 H -0.294 1.294 25 C -0.116 4.116 26 N -0.228 5.228 27 N -0.087 5.087 28 H 0.050 0.950 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.051 0.949 33 H 0.065 0.935 34 H 0.048 0.952 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.117 0.883 38 H 0.140 0.860 39 H 0.239 0.761 40 H 0.412 0.588 41 H 0.106 0.894 42 H 0.048 0.952 43 H 0.092 0.908 44 H 0.078 0.922 45 H 0.025 0.975 46 H 0.021 0.979 47 H 0.372 0.628 48 H 0.250 0.750 49 H 0.114 0.886 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.711 0.082 -32.176 34.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.105 4.105 3 C -0.209 4.209 4 C -0.164 4.164 5 C -0.007 4.007 6 N -0.131 5.131 7 C -0.047 4.047 8 C -0.268 4.268 9 C 0.393 3.607 10 O -0.445 6.445 11 N -0.341 5.341 12 C 0.022 3.978 13 C -0.180 4.180 14 C -0.134 4.134 15 C 0.034 3.966 16 N -0.388 5.388 17 C -0.376 4.376 18 H 0.095 0.905 19 C -0.272 4.272 20 N -0.623 5.623 21 Si 0.804 3.196 22 H -0.188 1.188 23 H -0.221 1.221 24 H -0.221 1.221 25 C -0.154 4.154 26 N -0.101 5.101 27 N -0.067 5.067 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.105 0.895 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.135 0.865 38 H 0.158 0.842 39 H 0.255 0.745 40 H 0.249 0.751 41 H 0.124 0.876 42 H 0.067 0.933 43 H 0.111 0.889 44 H 0.096 0.904 45 H 0.043 0.957 46 H 0.039 0.961 47 H 0.203 0.797 48 H 0.059 0.941 49 H 0.132 0.868 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -12.056 0.196 -32.214 34.397 hybrid contribution 0.038 0.747 1.222 1.433 sum -12.018 0.943 -30.992 33.254 Atomic orbital electron populations 1.21977 0.94152 1.02830 1.02256 1.21024 0.96559 0.96060 0.96901 1.21858 1.00976 0.95989 1.02081 1.21918 1.02016 0.92730 0.99738 1.22669 1.02710 0.92524 0.82843 1.50852 1.06849 1.34529 1.20911 1.23879 1.00970 0.91536 0.88289 1.21468 0.90688 1.11976 1.02624 1.16926 0.84727 0.78293 0.80705 1.90777 1.19315 1.58012 1.76347 1.45502 1.11857 1.52291 1.24470 1.21857 0.99629 0.92420 0.83901 1.23470 0.96807 1.00050 0.97631 1.22736 0.96451 0.98979 0.95187 1.20834 0.96404 0.88733 0.90607 1.42613 1.80034 1.05420 1.10769 1.19736 1.34868 0.93518 0.89446 0.90498 1.25617 1.03701 0.95152 1.02772 1.69845 1.56614 0.98013 1.37835 0.85036 0.76948 0.77762 0.79807 1.18837 1.22057 1.22090 1.23235 0.97210 0.96996 0.97971 1.74639 1.21090 1.06730 1.07654 1.81912 0.97552 1.19530 1.07731 0.93054 0.91939 0.90988 0.89459 0.92993 0.91633 0.93256 0.92024 0.91679 0.86514 0.84229 0.74489 0.75145 0.87557 0.93337 0.88919 0.90413 0.95721 0.96066 0.79696 0.94110 0.86810 0.89434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.51 8.95 71.98 0.64 0.13 16 2 C -0.09 -0.43 2.92 -10.79 -0.03 -0.46 16 3 C -0.15 -1.12 9.19 71.98 0.66 -0.46 16 4 C -0.13 -1.02 4.89 30.59 0.15 -0.87 16 5 C 0.11 0.64 6.29 86.38 0.54 1.18 16 6 N -0.35 -5.14 3.69 -347.08 -1.28 -6.42 16 7 C 0.11 1.76 11.27 83.85 0.95 2.71 16 8 C -0.13 -3.02 6.99 40.82 0.29 -2.73 16 9 C 0.61 16.44 7.82 86.69 0.68 17.12 16 10 O -0.57 -17.43 16.48 -4.04 -0.07 -17.50 16 11 N -0.69 -17.92 5.26 -443.18 -2.33 -20.25 16 12 C 0.13 3.25 4.30 45.52 0.20 3.45 16 13 C -0.14 -4.37 7.45 31.22 0.23 -4.14 16 14 C -0.11 -3.70 3.64 -10.18 -0.04 -3.73 16 15 C 0.16 6.50 6.10 86.38 0.53 7.03 16 16 N -0.75 -39.46 5.60 -343.46 -1.92 -41.39 16 17 C -0.24 -14.09 9.99 84.03 0.84 -13.25 16 18 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 19 C -0.08 -4.79 5.50 84.86 0.47 -4.32 16 20 N -0.97 -61.63 13.06 21.65 0.28 -61.35 16 21 Si 0.98 47.44 29.55 68.60 2.03 49.47 16 22 H -0.26 -11.98 7.11 99.48 0.71 -11.28 16 23 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 24 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 25 C -0.12 -2.72 7.38 31.12 0.23 -2.49 16 26 N -0.23 -5.99 12.04 -50.00 -0.60 -6.59 16 27 N -0.09 -2.02 13.65 37.02 0.51 -1.51 16 28 H 0.05 0.26 8.14 -2.39 -0.02 0.25 16 29 H 0.06 0.20 8.14 -2.39 -0.02 0.18 16 30 H 0.07 0.01 6.56 -2.38 -0.02 0.00 16 31 H 0.09 0.26 8.14 -2.39 -0.02 0.24 16 32 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 34 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 35 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 37 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 38 H 0.14 -0.08 6.51 -2.38 -0.02 -0.09 16 39 H 0.24 1.89 8.06 -2.91 -0.02 1.86 16 40 H 0.41 10.31 8.39 -92.71 -0.78 9.53 16 41 H 0.11 2.68 7.50 -2.39 -0.02 2.66 16 42 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.09 2.84 7.90 -2.39 -0.02 2.82 16 44 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 45 H 0.02 0.99 7.85 -2.38 -0.02 0.97 16 46 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 47 H 0.37 21.10 7.67 -92.71 -0.71 20.39 16 48 H 0.25 15.31 8.31 -92.71 -0.77 14.54 16 49 H 0.11 2.33 8.10 -2.38 -0.02 2.31 16 50 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -77.32 413.86 2.40 -74.92 By element: Atomic # 1 Polarization: 32.00 SS G_CDS: -0.54 Total: 31.46 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: 6.33 Total: -0.84 kcal Atomic # 7 Polarization: -132.16 SS G_CDS: -5.35 Total: -137.51 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: -0.07 Total: -17.50 kcal Atomic # 14 Polarization: 47.44 SS G_CDS: 2.03 Total: 49.47 kcal Total: -77.32 2.40 -74.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674579478.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.044 kcal (2) G-P(sol) polarization free energy of solvation -77.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.39 seconds